Wall clock time and date at job start Tue Mar 31 2020 10:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47369 * 2 1 4 4 C 1.53011 * 109.47189 * 240.00331 * 2 1 3 5 5 C 1.50697 * 109.47309 * 120.00737 * 2 1 3 6 6 C 1.38265 * 120.08134 * 359.97438 * 5 2 1 7 7 C 1.38016 * 119.86695 * 180.10779 * 6 5 2 8 8 C 1.38742 * 120.37486 * 0.02562 * 7 6 5 9 9 C 1.37829 * 119.72935 * 359.84615 * 8 7 6 10 10 C 1.38029 * 120.08851 * 180.02562 * 5 2 1 11 11 C 1.50718 * 121.66349 * 180.25011 * 9 8 7 12 12 C 1.52895 * 109.96508 * 343.22759 * 11 9 8 13 13 N 1.47162 * 108.51131 * 50.33069 * 12 11 9 14 14 C 1.46893 * 111.00169 * 52.12631 * 13 12 11 15 15 C 1.53004 * 109.47236 * 163.78666 * 14 13 12 16 16 C 1.50703 * 115.54703 * 304.71139 * 15 14 13 17 17 H 1.08004 * 120.00145 * 144.70517 * 16 15 14 18 18 C 1.37875 * 120.00128 * 324.70138 * 16 15 14 19 19 N 1.31523 * 120.00003 * 349.76464 * 18 16 15 20 20 Si 1.86792 * 120.00102 * 169.75944 * 18 16 15 21 21 H 1.48505 * 109.47189 * 90.00620 * 20 18 16 22 22 H 1.48509 * 109.47326 * 210.00127 * 20 18 16 23 23 H 1.48499 * 109.47323 * 330.00130 * 20 18 16 24 24 C 1.52995 * 117.50048 * 159.04166 * 15 14 13 25 25 C 1.52998 * 117.49988 * 90.38125 * 15 14 13 26 26 C 1.46634 * 110.23834 * 288.71325 * 13 12 11 27 27 H 1.09001 * 109.46840 * 299.99696 * 1 2 3 28 28 H 1.09002 * 109.46765 * 59.99549 * 1 2 3 29 29 H 1.08998 * 109.47697 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47067 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47552 * 300.00588 * 3 2 1 32 32 H 1.09004 * 109.46383 * 60.00310 * 3 2 1 33 33 H 1.08998 * 109.46995 * 300.00667 * 4 2 1 34 34 H 1.09001 * 109.46407 * 59.99843 * 4 2 1 35 35 H 1.08991 * 109.46814 * 180.02562 * 4 2 1 36 36 H 1.08001 * 120.06730 * 0.08735 * 6 5 2 37 37 H 1.08001 * 119.81603 * 179.97438 * 7 6 5 38 38 H 1.08002 * 119.82441 * 359.93685 * 10 5 2 39 39 H 1.08998 * 109.38615 * 223.07205 * 11 9 8 40 40 H 1.09002 * 109.30443 * 103.32739 * 11 9 8 41 41 H 1.08999 * 109.62732 * 290.62372 * 12 11 9 42 42 H 1.08997 * 109.78824 * 170.13463 * 12 11 9 43 43 H 1.08995 * 109.47403 * 43.78607 * 14 13 12 44 44 H 1.09003 * 109.47350 * 283.78077 * 14 13 12 45 45 H 0.97001 * 120.00083 * 185.01944 * 19 18 16 46 46 H 1.09000 * 117.49788 * 359.97438 * 24 15 14 47 47 H 1.08998 * 117.50239 * 145.01991 * 24 15 14 48 48 H 1.09007 * 117.49626 * 214.98287 * 25 15 14 49 49 H 1.08995 * 117.50194 * 359.97096 * 25 15 14 50 50 H 1.09001 * 109.30688 * 172.86541 * 26 13 12 51 51 H 1.09004 * 109.30274 * 292.24523 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2303 6 6 1.1354 -1.2363 2.1418 7 6 1.6003 -1.8842 3.2682 8 6 2.9637 -2.0110 3.4921 9 6 3.8573 -1.4890 2.5818 10 6 3.3890 -0.8372 1.4508 11 6 5.3469 -1.6065 2.7788 12 6 5.6545 -1.9664 4.2326 13 7 4.8272 -3.1226 4.6128 14 6 4.9776 -4.2182 3.6460 15 6 4.4475 -5.5159 4.2592 16 6 5.0596 -5.9085 5.5792 17 1 4.4552 -6.3925 6.3321 18 6 6.3913 -5.6498 5.8256 19 7 7.1751 -5.2486 4.8486 20 14 7.0823 -5.8690 7.5472 21 1 7.5790 -7.2593 7.7079 22 1 8.2020 -4.9162 7.7563 23 1 6.0154 -5.6059 8.5460 24 6 4.0543 -6.6413 3.3003 25 6 2.9710 -5.8504 4.0379 26 6 3.4223 -2.7217 4.7384 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8898 32 1 1.6767 1.9562 0.8901 33 1 1.6766 -1.7488 -1.2495 34 1 1.6766 -0.2073 -2.1392 35 1 3.1299 -0.7216 -1.2491 36 1 0.0730 -1.1399 1.9728 37 1 0.8990 -2.2943 3.9798 38 1 4.0896 -0.4267 0.7387 39 1 5.8205 -0.6560 2.5333 40 1 5.7368 -2.3851 2.1230 41 1 5.4187 -1.1196 4.8772 42 1 6.7093 -2.2215 4.3344 43 1 6.0313 -4.3390 3.3947 44 1 4.4129 -3.9860 2.7430 45 1 8.1259 -5.1367 5.0045 46 1 4.1728 -6.4571 2.2325 47 1 4.2379 -7.6657 3.6242 48 1 2.4425 -6.3547 4.8469 49 1 2.3771 -5.1457 3.4558 50 1 2.8073 -3.6079 4.8947 51 1 3.3129 -2.0555 5.5942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001644478564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:18 Heat of formation + Delta-G solvation = 32.754852 kcal Electronic energy + Delta-G solvation = -27443.602716 eV Core-core repulsion = 24114.392499 eV Total energy + Delta-G solvation = -3329.210217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52749 -39.57076 -37.85380 -36.15349 -34.00417 -33.50204 -31.22155 -30.20497 -28.10812 -28.09535 -27.96338 -27.17536 -24.82463 -23.76995 -23.09314 -22.79687 -21.43894 -20.52527 -19.18745 -17.96253 -17.39269 -16.75541 -16.42849 -16.10621 -15.96014 -15.49794 -15.36181 -15.11408 -15.03227 -14.77903 -14.47085 -14.37980 -14.00068 -13.56388 -13.34486 -13.24220 -13.03400 -12.91172 -12.84967 -12.78593 -12.60586 -12.56009 -12.40591 -12.36317 -12.22705 -12.15491 -11.89564 -11.73735 -11.69695 -11.46971 -11.28063 -11.07546 -10.88774 -10.44711 -9.86330 -9.57018 -9.24123 -8.74592 -7.87145 -5.95059 0.48852 0.52123 1.46075 1.50403 1.58590 2.53762 2.83567 3.12626 3.42860 3.67487 3.76463 3.80175 3.97044 4.07881 4.12459 4.13893 4.24528 4.30444 4.40067 4.40605 4.55618 4.60030 4.62743 4.68928 4.74244 4.78617 4.79073 4.82294 4.90553 4.90901 4.95845 4.99501 5.02616 5.03855 5.08546 5.11689 5.16107 5.17187 5.20021 5.25581 5.32634 5.39375 5.44758 5.45351 5.55643 5.62409 5.71385 5.77318 5.82151 6.11250 6.18521 6.48161 6.60238 6.73363 7.03223 7.65728 9.12183 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.022709 B = 0.003772 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.673080 B = 7421.497549 C = 7782.361208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.027 4.027 3 C -0.135 4.135 4 C -0.137 4.137 5 C -0.077 4.077 6 C -0.128 4.128 7 C -0.123 4.123 8 C -0.120 4.120 9 C -0.085 4.085 10 C -0.121 4.121 11 C -0.108 4.108 12 C 0.061 3.939 13 N -0.508 5.508 14 C 0.125 3.875 15 C 0.044 3.956 16 C -0.492 4.492 17 H 0.039 0.961 18 C 0.055 3.945 19 N -0.892 5.892 20 Si 0.940 3.060 21 H -0.284 1.284 22 H -0.285 1.285 23 H -0.277 1.277 24 C -0.211 4.211 25 C -0.194 4.194 26 C 0.090 3.910 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.142 0.858 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.087 0.913 44 H -0.008 1.008 45 H 0.256 0.744 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.337 13.865 -10.168 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 C -0.192 4.192 4 C -0.195 4.195 5 C -0.077 4.077 6 C -0.145 4.145 7 C -0.142 4.142 8 C -0.122 4.122 9 C -0.085 4.085 10 C -0.139 4.139 11 C -0.146 4.146 12 C -0.068 4.068 13 N -0.227 5.227 14 C -0.003 4.003 15 C 0.043 3.957 16 C -0.529 4.529 17 H 0.057 0.943 18 C -0.146 4.146 19 N -0.530 5.530 20 Si 0.768 3.232 21 H -0.211 1.211 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.249 4.249 25 C -0.231 4.231 26 C -0.039 4.039 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.160 0.840 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.009 0.991 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.096 0.904 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.960 13.800 -9.692 19.586 hybrid contribution 0.340 -0.403 0.278 0.596 sum -9.620 13.397 -9.414 18.991 Atomic orbital electron populations 1.21940 0.93210 1.02075 1.02612 1.19526 0.96443 0.95147 0.91614 1.21860 1.00964 0.94076 1.02285 1.21885 1.00914 0.99960 0.96692 1.19975 0.92777 0.98381 0.96567 1.21300 1.00532 0.98681 0.94026 1.21261 0.94491 0.99874 0.98533 1.20571 0.94224 0.99351 0.98052 1.19670 0.95261 0.98379 0.95182 1.20986 0.95790 1.00287 0.96808 1.21027 0.92284 1.02252 0.99047 1.22100 0.98094 0.92950 0.93614 1.62237 1.05612 1.06393 1.48503 1.21354 1.01218 0.88704 0.88976 1.19081 0.90536 0.91789 0.94292 1.20459 0.95095 1.38556 0.98786 0.94301 1.25229 0.97039 0.93699 0.98662 1.69902 1.04006 1.47044 1.32018 0.85859 0.77805 0.77152 0.82377 1.21060 1.21070 1.20229 1.22943 1.07270 0.97993 0.96741 1.22846 0.93411 1.04230 1.02662 1.21159 0.90446 0.98446 0.93819 0.92095 0.91010 0.92567 0.92878 0.90836 0.92927 0.93501 0.90698 0.93007 0.83987 0.85468 0.85617 0.89149 0.92029 0.90956 0.91807 0.89486 0.99051 0.93452 0.91370 0.91264 0.90874 0.90567 0.90354 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 7.13 71.98 0.51 -1.60 16 2 C -0.03 -0.49 0.85 -52.93 -0.05 -0.54 16 3 C -0.13 -2.14 8.29 71.98 0.60 -1.54 16 4 C -0.14 -2.40 8.29 71.99 0.60 -1.81 16 5 C -0.08 -1.87 4.75 -19.91 -0.09 -1.96 16 6 C -0.13 -3.19 8.98 22.22 0.20 -2.99 16 7 C -0.12 -3.58 9.65 22.34 0.22 -3.37 16 8 C -0.12 -4.03 5.11 -19.86 -0.10 -4.14 16 9 C -0.08 -2.73 5.08 -19.85 -0.10 -2.83 16 10 C -0.12 -3.31 8.34 22.33 0.19 -3.12 16 11 C -0.11 -3.51 5.18 29.82 0.15 -3.35 16 12 C 0.06 2.27 5.97 86.22 0.51 2.79 16 13 N -0.51 -21.77 4.62 -901.18 -4.16 -25.93 16 14 C 0.13 5.86 2.84 86.31 0.24 6.10 16 15 C 0.04 2.17 1.65 -52.93 -0.09 2.09 16 16 C -0.49 -26.97 8.75 25.60 0.22 -26.74 16 17 H 0.04 2.18 7.84 -2.91 -0.02 2.15 16 18 C 0.05 2.96 5.20 84.65 0.44 3.40 16 19 N -0.89 -48.75 10.72 21.45 0.23 -48.52 16 20 Si 0.94 43.92 29.55 68.60 2.03 45.95 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 C -0.21 -9.84 9.96 30.62 0.30 -9.53 16 25 C -0.19 -8.54 8.34 30.62 0.26 -8.28 16 26 C 0.09 3.40 5.44 85.58 0.47 3.86 16 27 H 0.06 0.88 7.52 -2.39 -0.02 0.87 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.88 7.52 -2.39 -0.02 0.86 16 30 H 0.05 0.88 7.39 -2.39 -0.02 0.86 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 0.95 7.39 -2.39 -0.02 0.94 16 36 H 0.14 2.84 5.92 -2.91 -0.02 2.83 16 37 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 38 H 0.13 3.05 7.09 -2.91 -0.02 3.03 16 39 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.06 2.20 7.18 -2.39 -0.02 2.19 16 41 H 0.07 2.47 8.05 -2.39 -0.02 2.45 16 42 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.09 4.58 5.78 -2.39 -0.01 4.56 16 44 H -0.01 -0.39 6.12 -2.39 -0.01 -0.41 16 45 H 0.26 13.49 8.32 -92.71 -0.77 12.72 16 46 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 47 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 48 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 49 H 0.08 3.14 7.81 -2.39 -0.02 3.12 16 50 H 0.08 3.16 5.59 -2.39 -0.01 3.14 16 51 H 0.08 2.74 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -58.34 383.13 3.46 -54.87 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.88 Total: 27.20 kcal Atomic # 6 Polarization: -58.06 SS G_CDS: 4.48 Total: -53.57 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -3.93 Total: -74.45 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -58.34 3.46 -54.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644478564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.625 kcal (2) G-P(sol) polarization free energy of solvation -58.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds