Wall clock time and date at job start Tue Mar 31 2020 11:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46675 * 2 1 4 4 C 1.50703 * 109.46882 * 239.99926 * 2 1 3 5 5 C 1.38228 * 119.99954 * 294.43453 * 4 2 1 6 6 C 1.38235 * 119.99909 * 179.79100 * 5 4 2 7 7 C 1.38239 * 120.00005 * 0.43941 * 6 5 4 8 8 C 1.38244 * 119.99715 * 359.81284 * 7 6 5 9 9 C 1.38230 * 119.99918 * 359.97438 * 8 7 6 10 10 N 1.46899 * 109.46974 * 120.00250 * 2 1 3 11 11 C 1.46901 * 111.00134 * 155.70388 * 10 2 1 12 12 C 1.53005 * 109.46971 * 80.47448 * 11 10 2 13 13 C 1.53780 * 113.61190 * 267.32550 * 12 11 10 14 14 C 1.53955 * 87.02041 * 220.05013 * 13 12 11 15 15 C 1.53779 * 113.61290 * 169.72049 * 12 11 10 16 16 C 1.46900 * 111.00054 * 31.74544 * 10 2 1 17 17 C 1.52999 * 109.47203 * 197.64784 * 16 10 2 18 18 C 1.50700 * 115.55513 * 273.33819 * 17 16 10 19 19 H 1.08001 * 119.99705 * 143.93888 * 18 17 16 20 20 C 1.37874 * 119.99889 * 323.94701 * 18 17 16 21 21 N 1.31514 * 120.00053 * 344.75883 * 20 18 17 22 22 Si 1.86798 * 120.00267 * 164.76314 * 20 18 17 23 23 H 1.48499 * 109.46862 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47138 * 119.99357 * 22 20 18 25 25 H 1.48495 * 109.47382 * 239.99867 * 22 20 18 26 26 C 1.53002 * 117.49597 * 127.62564 * 17 16 10 27 27 C 1.53001 * 60.00179 * 252.51392 * 26 17 16 28 28 H 1.09004 * 109.47128 * 59.99750 * 1 2 3 29 29 H 1.09002 * 109.47146 * 299.99920 * 1 2 3 30 30 H 1.09001 * 109.47263 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00351 * 359.97438 * 5 4 2 32 32 H 1.07999 * 120.00692 * 180.27429 * 6 5 4 33 33 H 1.07994 * 120.00508 * 179.83245 * 7 6 5 34 34 H 1.08000 * 119.99978 * 180.02562 * 8 7 6 35 35 H 1.08001 * 120.00076 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47216 * 200.47071 * 11 10 2 37 37 H 1.09002 * 109.46859 * 320.47580 * 11 10 2 38 38 H 1.08994 * 112.84968 * 38.51708 * 12 11 10 39 39 H 1.09010 * 113.61745 * 334.56589 * 13 12 11 40 40 H 1.09000 * 113.61857 * 105.46927 * 13 12 11 41 41 H 1.08998 * 113.53393 * 270.81725 * 14 13 12 42 42 H 1.08998 * 113.67215 * 139.92830 * 14 13 12 43 43 H 1.09002 * 113.61079 * 254.52991 * 15 12 11 44 44 H 1.08998 * 113.61408 * 25.34424 * 15 12 11 45 45 H 1.08999 * 109.47305 * 317.65532 * 16 10 2 46 46 H 1.09006 * 109.46882 * 77.65584 * 16 10 2 47 47 H 0.96997 * 120.00414 * 185.07241 * 21 20 18 48 48 H 1.08998 * 117.50071 * 0.02562 * 26 17 16 49 49 H 1.09005 * 117.49696 * 145.02262 * 26 17 16 50 50 H 1.08995 * 117.49922 * 252.50931 * 27 26 17 51 51 H 1.08997 * 117.51597 * 107.48532 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7958 -2.0626 -1.3928 6 6 2.2528 -2.7134 -2.5235 7 6 2.9542 -2.0138 -3.4877 8 6 3.1952 -0.6626 -3.3228 9 6 2.7344 -0.0110 -2.1942 10 7 2.0197 -0.6925 1.1994 11 6 3.3736 -1.2211 0.9863 12 6 4.3948 -0.0965 1.1697 13 6 4.7599 0.6235 -0.1392 14 6 6.2120 0.6451 0.3717 15 6 5.8511 -0.5884 1.2161 16 6 1.0956 -1.7600 1.6051 17 6 1.3805 -2.1576 3.0548 18 6 2.4475 -3.2049 3.2439 19 1 3.1119 -3.1516 4.0937 20 6 2.5756 -4.2310 2.3320 21 7 1.6060 -4.4767 1.4780 22 14 4.1262 -5.2724 2.3094 23 1 5.0581 -4.7955 3.3625 24 1 3.7730 -6.6918 2.5662 25 1 4.7803 -5.1576 0.9812 26 6 0.2015 -2.1655 4.0299 27 6 1.2633 -1.0677 4.1222 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.2514 -2.6101 -0.6376 32 1 2.0642 -3.7689 -2.6525 33 1 3.3136 -2.5227 -4.3698 34 1 3.7429 -0.1159 -4.0763 35 1 2.9231 1.0446 -2.0652 36 1 3.5722 -2.0133 1.7081 37 1 3.4522 -1.6221 -0.0242 38 1 4.1366 0.5811 1.9833 39 1 4.6193 0.0097 -1.0291 40 1 4.3138 1.6137 -0.2320 41 1 6.4510 1.5267 0.9666 42 1 6.9516 0.4427 -0.4029 43 1 6.2847 -0.5751 2.2161 44 1 6.0090 -1.5347 0.6989 45 1 0.0691 -1.4033 1.5211 46 1 1.2336 -2.6257 0.9571 47 1 1.6635 -5.2431 0.8863 48 1 -0.7771 -1.8878 3.6385 49 1 0.1973 -2.9284 4.8083 50 1 1.9576 -1.1085 4.9615 51 1 0.9836 -0.0675 3.7917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644664787.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:38 Heat of formation + Delta-G solvation = 92.144523 kcal Electronic energy + Delta-G solvation = -28726.574510 eV Core-core repulsion = 25399.939623 eV Total energy + Delta-G solvation = -3326.634888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.08526 -37.98603 -37.17659 -35.25097 -32.27380 -31.15337 -30.46415 -29.44399 -27.09968 -25.78551 -25.22841 -24.74707 -22.54806 -22.11432 -21.50605 -20.97174 -19.52800 -18.88355 -18.43619 -16.60523 -16.07663 -15.38946 -15.14729 -14.84232 -14.73310 -14.35641 -14.15427 -13.79889 -13.74014 -13.29760 -13.00609 -12.63450 -12.48264 -12.15317 -11.90987 -11.73084 -11.66487 -11.63725 -11.35686 -11.15019 -11.08041 -10.85401 -10.73452 -10.66084 -10.40839 -10.31751 -10.22375 -10.12217 -9.97997 -9.65638 -9.31121 -9.16014 -8.78139 -8.60157 -8.47513 -8.18899 -8.06975 -7.13785 -6.04944 -4.06224 1.72727 1.78803 3.21245 3.32175 3.36400 4.15372 4.33041 4.76539 5.01299 5.12424 5.14268 5.19189 5.21364 5.28245 5.34867 5.43841 5.50869 5.61973 5.76595 5.78526 5.87601 5.94945 5.97120 6.04001 6.17412 6.19679 6.22540 6.24513 6.31903 6.37869 6.39477 6.41703 6.46580 6.55993 6.61277 6.63933 6.72534 6.77967 6.81150 6.89581 6.92401 6.98068 7.05365 7.09501 7.12706 7.27289 7.35716 7.40010 7.49514 7.63222 7.98870 8.26463 8.29444 8.52254 8.88108 9.47152 10.90636 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.010498 B = 0.006632 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.536136 B = 4221.026716 C = 4306.901225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.117 3.883 3 H 0.076 0.924 4 C -0.090 4.090 5 C -0.107 4.107 6 C -0.122 4.122 7 C -0.131 4.131 8 C -0.132 4.132 9 C -0.115 4.115 10 N -0.515 5.515 11 C 0.044 3.956 12 C -0.091 4.091 13 C -0.143 4.143 14 C -0.144 4.144 15 C -0.137 4.137 16 C 0.053 3.947 17 C 0.063 3.937 18 C -0.475 4.475 19 H 0.059 0.941 20 C 0.073 3.927 21 N -0.875 5.875 22 Si 0.874 3.126 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.280 1.280 26 C -0.208 4.208 27 C -0.192 4.192 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.039 0.961 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.048 0.952 46 H 0.110 0.890 47 H 0.260 0.740 48 H 0.060 0.940 49 H 0.072 0.928 50 H 0.066 0.934 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.470 7.928 -7.865 11.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.009 3.991 3 H 0.094 0.906 4 C -0.092 4.092 5 C -0.125 4.125 6 C -0.140 4.140 7 C -0.149 4.149 8 C -0.150 4.150 9 C -0.133 4.133 10 N -0.237 5.237 11 C -0.083 4.083 12 C -0.110 4.110 13 C -0.180 4.180 14 C -0.181 4.181 15 C -0.175 4.175 16 C -0.073 4.073 17 C 0.062 3.938 18 C -0.513 4.513 19 H 0.077 0.923 20 C -0.128 4.128 21 N -0.513 5.513 22 Si 0.702 3.298 23 H -0.195 1.195 24 H -0.211 1.211 25 H -0.206 1.206 26 C -0.247 4.247 27 C -0.229 4.229 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.161 0.839 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.127 0.873 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.464 8.176 -7.656 11.469 hybrid contribution 0.839 -1.209 -0.641 1.605 sum 3.303 6.967 -8.297 11.327 Atomic orbital electron populations 1.22100 0.94968 1.02605 1.01065 1.20856 0.94386 0.97668 0.86236 0.90618 1.20646 0.97451 0.94580 0.96527 1.21650 0.98990 0.94373 0.97473 1.21140 0.98716 0.99716 0.94445 1.21032 1.00108 0.94613 0.99191 1.20986 1.01238 0.94798 0.97965 1.20987 0.98677 0.99544 0.94139 1.62364 1.02800 1.30205 1.28303 1.22597 0.87184 0.96879 1.01668 1.22462 0.93612 0.97957 0.96978 1.23284 0.95493 1.00247 0.98943 1.22835 0.97224 0.98578 0.99510 1.22881 0.97460 0.97457 0.99727 1.22493 0.92883 0.93798 0.98148 1.18865 0.93937 0.93622 0.87391 1.20634 1.14207 1.08164 1.08271 0.92297 1.24874 0.95830 0.96781 0.95358 1.69768 1.30790 1.27256 1.23527 0.86799 0.84438 0.80232 0.78377 1.19465 1.21059 1.20574 1.22982 0.93633 1.01567 1.06482 1.22650 1.02876 0.93791 1.03618 0.93284 0.91882 0.91468 0.83889 0.86628 0.87024 0.86961 0.86634 0.87173 0.94266 0.89257 0.89817 0.92593 0.90920 0.92508 0.91967 0.90782 0.93380 0.87330 0.92918 0.92177 0.90952 0.91533 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 7.78 37.16 0.29 -2.06 16 2 C 0.12 1.95 2.68 -68.86 -0.18 1.77 16 3 H 0.08 1.20 7.88 -51.93 -0.41 0.79 16 4 C -0.09 -1.48 2.67 -104.62 -0.28 -1.76 16 5 C -0.11 -1.92 7.20 -39.59 -0.28 -2.20 16 6 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 7 C -0.13 -1.89 10.05 -39.58 -0.40 -2.28 16 8 C -0.13 -1.81 10.05 -39.58 -0.40 -2.20 16 9 C -0.11 -1.66 6.51 -39.58 -0.26 -1.92 16 10 N -0.51 -9.88 4.39 -228.03 -1.00 -10.88 16 11 C 0.04 0.87 4.27 -3.82 -0.02 0.85 16 12 C -0.09 -1.56 3.77 -89.81 -0.34 -1.89 16 13 C -0.14 -2.09 5.75 -25.83 -0.15 -2.24 16 14 C -0.14 -1.97 8.09 -25.83 -0.21 -2.17 16 15 C -0.14 -2.19 7.65 -25.92 -0.20 -2.39 16 16 C 0.05 1.14 3.43 -3.82 -0.01 1.13 16 17 C 0.06 1.48 1.74 -155.66 -0.27 1.21 16 18 C -0.48 -12.20 7.10 -34.44 -0.24 -12.45 16 19 H 0.06 1.56 7.86 -52.49 -0.41 1.15 16 20 C 0.07 1.86 4.41 -17.82 -0.08 1.78 16 21 N -0.88 -22.33 10.80 55.43 0.60 -21.73 16 22 Si 0.87 20.13 29.57 -169.99 -5.03 15.11 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C -0.21 -4.71 9.88 -26.73 -0.26 -4.97 16 27 C -0.19 -4.19 9.81 -26.73 -0.26 -4.45 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.97 8.01 -51.93 -0.42 0.56 16 30 H 0.07 1.15 5.86 -51.93 -0.30 0.84 16 31 H 0.14 2.92 4.89 -52.49 -0.26 2.67 16 32 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.12 1.49 7.53 -52.49 -0.40 1.09 16 36 H 0.11 2.56 4.62 -51.93 -0.24 2.32 16 37 H 0.04 0.81 4.25 -51.93 -0.22 0.59 16 38 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 39 H 0.08 1.29 5.22 -51.92 -0.27 1.02 16 40 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 45 H 0.05 1.02 4.85 -51.93 -0.25 0.77 16 46 H 0.11 2.52 2.36 -51.93 -0.12 2.40 16 47 H 0.26 6.43 8.32 -40.82 -0.34 6.09 16 48 H 0.06 1.28 8.04 -51.93 -0.42 0.87 16 49 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 50 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 51 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -25.01 374.13 -12.09 -37.10 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -8.34 Total: 13.43 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: -3.96 Total: -38.66 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: -0.40 Total: -32.62 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -25.01 -12.09 -37.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644664787.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.247 kcal (2) G-P(sol) polarization free energy of solvation -25.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds