Wall clock time and date at job start Tue Mar 31 2020 11:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46675 * 2 1 4 4 C 1.50703 * 109.46882 * 239.99926 * 2 1 3 5 5 C 1.38228 * 119.99954 * 294.43453 * 4 2 1 6 6 C 1.38235 * 119.99909 * 179.79100 * 5 4 2 7 7 C 1.38239 * 120.00005 * 0.43941 * 6 5 4 8 8 C 1.38244 * 119.99715 * 359.81284 * 7 6 5 9 9 C 1.38230 * 119.99918 * 359.97438 * 8 7 6 10 10 N 1.46899 * 109.46974 * 120.00250 * 2 1 3 11 11 C 1.46901 * 111.00134 * 155.70388 * 10 2 1 12 12 C 1.53005 * 109.46971 * 80.47448 * 11 10 2 13 13 C 1.53780 * 113.61190 * 267.32550 * 12 11 10 14 14 C 1.53955 * 87.02041 * 220.05013 * 13 12 11 15 15 C 1.53779 * 113.61290 * 169.72049 * 12 11 10 16 16 C 1.46900 * 111.00054 * 31.74544 * 10 2 1 17 17 C 1.52999 * 109.47203 * 197.64784 * 16 10 2 18 18 C 1.50700 * 115.55513 * 273.33819 * 17 16 10 19 19 H 1.08001 * 119.99705 * 143.93888 * 18 17 16 20 20 C 1.37874 * 119.99889 * 323.94701 * 18 17 16 21 21 N 1.31514 * 120.00053 * 344.75883 * 20 18 17 22 22 Si 1.86798 * 120.00267 * 164.76314 * 20 18 17 23 23 H 1.48499 * 109.46862 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47138 * 119.99357 * 22 20 18 25 25 H 1.48495 * 109.47382 * 239.99867 * 22 20 18 26 26 C 1.53002 * 117.49597 * 127.62564 * 17 16 10 27 27 C 1.53001 * 60.00179 * 252.51392 * 26 17 16 28 28 H 1.09004 * 109.47128 * 59.99750 * 1 2 3 29 29 H 1.09002 * 109.47146 * 299.99920 * 1 2 3 30 30 H 1.09001 * 109.47263 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00351 * 359.97438 * 5 4 2 32 32 H 1.07999 * 120.00692 * 180.27429 * 6 5 4 33 33 H 1.07994 * 120.00508 * 179.83245 * 7 6 5 34 34 H 1.08000 * 119.99978 * 180.02562 * 8 7 6 35 35 H 1.08001 * 120.00076 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47216 * 200.47071 * 11 10 2 37 37 H 1.09002 * 109.46859 * 320.47580 * 11 10 2 38 38 H 1.08994 * 112.84968 * 38.51708 * 12 11 10 39 39 H 1.09010 * 113.61745 * 334.56589 * 13 12 11 40 40 H 1.09000 * 113.61857 * 105.46927 * 13 12 11 41 41 H 1.08998 * 113.53393 * 270.81725 * 14 13 12 42 42 H 1.08998 * 113.67215 * 139.92830 * 14 13 12 43 43 H 1.09002 * 113.61079 * 254.52991 * 15 12 11 44 44 H 1.08998 * 113.61408 * 25.34424 * 15 12 11 45 45 H 1.08999 * 109.47305 * 317.65532 * 16 10 2 46 46 H 1.09006 * 109.46882 * 77.65584 * 16 10 2 47 47 H 0.96997 * 120.00414 * 185.07241 * 21 20 18 48 48 H 1.08998 * 117.50071 * 0.02562 * 26 17 16 49 49 H 1.09005 * 117.49696 * 145.02262 * 26 17 16 50 50 H 1.08995 * 117.49922 * 252.50931 * 27 26 17 51 51 H 1.08997 * 117.51597 * 107.48532 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7958 -2.0626 -1.3928 6 6 2.2528 -2.7134 -2.5235 7 6 2.9542 -2.0138 -3.4877 8 6 3.1952 -0.6626 -3.3228 9 6 2.7344 -0.0110 -2.1942 10 7 2.0197 -0.6925 1.1994 11 6 3.3736 -1.2211 0.9863 12 6 4.3948 -0.0965 1.1697 13 6 4.7599 0.6235 -0.1392 14 6 6.2120 0.6451 0.3717 15 6 5.8511 -0.5884 1.2161 16 6 1.0956 -1.7600 1.6051 17 6 1.3805 -2.1576 3.0548 18 6 2.4475 -3.2049 3.2439 19 1 3.1119 -3.1516 4.0937 20 6 2.5756 -4.2310 2.3320 21 7 1.6060 -4.4767 1.4780 22 14 4.1262 -5.2724 2.3094 23 1 5.0581 -4.7955 3.3625 24 1 3.7730 -6.6918 2.5662 25 1 4.7803 -5.1576 0.9812 26 6 0.2015 -2.1655 4.0299 27 6 1.2633 -1.0677 4.1222 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.2514 -2.6101 -0.6376 32 1 2.0642 -3.7689 -2.6525 33 1 3.3136 -2.5227 -4.3698 34 1 3.7429 -0.1159 -4.0763 35 1 2.9231 1.0446 -2.0652 36 1 3.5722 -2.0133 1.7081 37 1 3.4522 -1.6221 -0.0242 38 1 4.1366 0.5811 1.9833 39 1 4.6193 0.0097 -1.0291 40 1 4.3138 1.6137 -0.2320 41 1 6.4510 1.5267 0.9666 42 1 6.9516 0.4427 -0.4029 43 1 6.2847 -0.5751 2.2161 44 1 6.0090 -1.5347 0.6989 45 1 0.0691 -1.4033 1.5211 46 1 1.2336 -2.6257 0.9571 47 1 1.6635 -5.2431 0.8863 48 1 -0.7771 -1.8878 3.6385 49 1 0.1973 -2.9284 4.8083 50 1 1.9576 -1.1085 4.9615 51 1 0.9836 -0.0675 3.7917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001644664787.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:37 Heat of formation + Delta-G solvation = 83.041435 kcal Electronic energy + Delta-G solvation = -28726.969250 eV Core-core repulsion = 25399.939623 eV Total energy + Delta-G solvation = -3327.029627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.40763 -39.21190 -38.73913 -36.78286 -34.22442 -32.50882 -31.67026 -30.72100 -28.56565 -27.65879 -26.56911 -26.11292 -23.86410 -23.32782 -22.84118 -22.77481 -21.09960 -20.17964 -20.00155 -18.20627 -17.53815 -16.81382 -16.67824 -16.39153 -16.04503 -15.75678 -15.58104 -15.29824 -15.20462 -14.70876 -14.22478 -14.15717 -13.90581 -13.47684 -13.41690 -13.18935 -13.05168 -12.97985 -12.85960 -12.82090 -12.67459 -12.38840 -12.25949 -12.10329 -12.01118 -11.88632 -11.72600 -11.52595 -11.26559 -11.10070 -10.91194 -10.69535 -10.55890 -10.43912 -9.92100 -9.65581 -9.40151 -8.72970 -7.98042 -6.06323 0.54729 0.59899 1.31928 1.39474 1.46624 2.39429 2.94284 3.02783 3.36880 3.83727 3.91701 3.94714 4.00108 4.03075 4.11565 4.18790 4.22140 4.35080 4.36080 4.47205 4.52698 4.67235 4.69682 4.77049 4.81113 4.85467 4.88549 4.94920 4.98233 5.01105 5.07900 5.09215 5.12302 5.15293 5.17644 5.22661 5.26473 5.29530 5.30074 5.36786 5.50638 5.50864 5.64063 5.65740 5.66784 5.69302 5.74999 5.80285 5.88938 6.19797 6.25612 6.53821 6.67339 6.73639 6.93320 7.47737 8.92445 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.010498 B = 0.006632 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.536136 B = 4221.026716 C = 4306.901225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.117 3.883 3 H 0.092 0.908 4 C -0.097 4.097 5 C -0.129 4.129 6 C -0.141 4.141 7 C -0.130 4.130 8 C -0.125 4.125 9 C -0.111 4.111 10 N -0.514 5.514 11 C 0.054 3.946 12 C -0.097 4.097 13 C -0.130 4.130 14 C -0.127 4.127 15 C -0.145 4.145 16 C 0.062 3.938 17 C 0.041 3.959 18 C -0.489 4.489 19 H 0.040 0.960 20 C 0.049 3.951 21 N -0.886 5.886 22 Si 0.916 3.084 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.280 1.280 26 C -0.211 4.211 27 C -0.174 4.174 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.071 0.929 37 H 0.030 0.970 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.095 0.905 47 H 0.260 0.740 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 10.320 -9.835 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.009 3.991 3 H 0.110 0.890 4 C -0.099 4.099 5 C -0.148 4.148 6 C -0.159 4.159 7 C -0.148 4.148 8 C -0.143 4.143 9 C -0.130 4.130 10 N -0.236 5.236 11 C -0.074 4.074 12 C -0.116 4.116 13 C -0.167 4.167 14 C -0.165 4.165 15 C -0.184 4.184 16 C -0.064 4.064 17 C 0.040 3.960 18 C -0.527 4.527 19 H 0.058 0.942 20 C -0.152 4.152 21 N -0.524 5.524 22 Si 0.743 3.257 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.206 1.206 26 C -0.250 4.250 27 C -0.212 4.212 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.155 0.845 34 H 0.165 0.835 35 H 0.157 0.843 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.112 0.888 47 H 0.070 0.930 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.690 10.570 -9.623 14.763 hybrid contribution 0.443 -1.980 -0.035 2.029 sum 4.134 8.591 -9.658 13.571 Atomic orbital electron populations 1.22027 0.94454 1.01521 1.02161 1.20934 0.94892 0.97870 0.85445 0.88983 1.20560 0.98323 0.93920 0.97048 1.21449 1.00374 0.95310 0.97638 1.21255 0.99757 0.99963 0.94921 1.21336 0.99003 0.95216 0.99233 1.21386 1.00232 0.94517 0.98152 1.21237 0.97531 1.00557 0.93636 1.62364 1.02210 1.28963 1.30083 1.22384 0.88234 0.96990 0.99747 1.22445 0.93223 0.97344 0.98589 1.23171 0.96082 1.00435 0.97025 1.22779 0.96916 0.97551 0.99214 1.22913 0.97044 0.98189 1.00214 1.22270 0.93358 0.94186 0.96610 1.19025 0.93893 0.94095 0.88978 1.20681 1.14790 1.09208 1.08008 0.94170 1.25231 0.97301 0.97514 0.95167 1.69865 1.31521 1.27388 1.23640 0.86144 0.82364 0.79127 0.78037 1.19696 1.20913 1.20580 1.22970 0.94172 1.01788 1.06027 1.22584 1.01984 0.93934 1.02656 0.91082 0.91792 0.93632 0.87244 0.86968 0.84479 0.83533 0.84292 0.91095 0.95207 0.89967 0.90342 0.90859 0.89272 0.91068 0.92116 0.92256 0.93402 0.88784 0.93040 0.91049 0.92030 0.91917 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 7.78 71.98 0.56 -3.85 16 2 C 0.12 3.75 2.68 44.17 0.12 3.87 16 3 H 0.09 2.66 7.88 -2.39 -0.02 2.64 16 4 C -0.10 -3.06 2.67 -19.87 -0.05 -3.11 16 5 C -0.13 -4.72 7.20 22.27 0.16 -4.56 16 6 C -0.14 -4.60 10.05 22.27 0.22 -4.38 16 7 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 8 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 9 C -0.11 -2.86 6.51 22.27 0.14 -2.71 16 10 N -0.51 -19.80 4.39 -875.34 -3.84 -23.64 16 11 C 0.05 2.17 4.27 86.30 0.37 2.53 16 12 C -0.10 -3.21 3.77 -10.27 -0.04 -3.25 16 13 C -0.13 -3.41 5.75 31.18 0.18 -3.23 16 14 C -0.13 -3.06 8.09 31.18 0.25 -2.81 16 15 C -0.15 -4.50 7.65 31.12 0.24 -4.27 16 16 C 0.06 2.77 3.43 86.30 0.30 3.07 16 17 C 0.04 1.98 1.74 -52.93 -0.09 1.89 16 18 C -0.49 -26.07 7.10 25.60 0.18 -25.89 16 19 H 0.04 2.23 7.86 -2.91 -0.02 2.20 16 20 C 0.05 2.55 4.41 84.65 0.37 2.92 16 21 N -0.89 -46.93 10.80 21.45 0.23 -46.70 16 22 Si 0.92 42.55 29.57 68.60 2.03 44.57 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 C -0.21 -9.70 9.88 30.60 0.30 -9.40 16 27 C -0.17 -7.65 9.81 30.60 0.30 -7.35 16 28 H 0.07 1.82 8.14 -2.38 -0.02 1.81 16 29 H 0.06 1.91 8.01 -2.39 -0.02 1.89 16 30 H 0.04 1.58 5.86 -2.39 -0.01 1.57 16 31 H 0.11 4.74 4.89 -2.91 -0.01 4.73 16 32 H 0.11 3.58 8.06 -2.91 -0.02 3.55 16 33 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 34 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.14 2.92 7.53 -2.91 -0.02 2.89 16 36 H 0.07 3.42 4.62 -2.39 -0.01 3.41 16 37 H 0.03 1.25 4.25 -2.39 -0.01 1.24 16 38 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.08 2.17 5.22 -2.38 -0.01 2.16 16 40 H 0.07 1.69 8.09 -2.39 -0.02 1.67 16 41 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.06 1.99 8.10 -2.39 -0.02 1.97 16 45 H 0.05 2.08 4.85 -2.39 -0.01 2.07 16 46 H 0.09 4.57 2.36 -2.38 -0.01 4.56 16 47 H 0.26 13.31 8.32 -92.71 -0.77 12.54 16 48 H 0.07 3.07 8.04 -2.39 -0.02 3.05 16 49 H 0.06 2.91 8.14 -2.38 -0.02 2.89 16 50 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 51 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -55.56 374.13 3.29 -52.27 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: 0.90 Total: 39.94 kcal Atomic # 6 Polarization: -70.41 SS G_CDS: 3.96 Total: -66.45 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -3.61 Total: -70.33 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -55.56 3.29 -52.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644664787.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.311 kcal (2) G-P(sol) polarization free energy of solvation -55.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds