Wall clock time and date at job start Tue Mar 31 2020 11:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46912 * 2 1 4 4 C 1.52995 * 109.47229 * 239.99815 * 2 1 3 5 5 C 1.50704 * 109.47163 * 59.99834 * 4 2 1 6 6 H 1.08001 * 119.99924 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00061 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99878 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99935 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47168 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47267 * 119.99987 * 9 7 5 12 12 H 1.48501 * 109.47216 * 240.00397 * 9 7 5 13 13 C 1.53003 * 109.47120 * 119.99897 * 2 1 3 14 14 N 1.46904 * 109.47049 * 300.00199 * 13 2 1 15 15 C 1.46902 * 110.99995 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.47148 * 180.02562 * 15 14 13 17 17 H 1.09005 * 109.46721 * 304.99131 * 16 15 14 18 18 C 1.52999 * 109.47468 * 64.99022 * 16 15 14 19 19 O 1.42894 * 109.47292 * 187.66427 * 18 16 15 20 20 C 1.52996 * 109.46949 * 184.99816 * 16 15 14 21 21 C 1.53001 * 109.46942 * 172.46708 * 20 16 15 22 22 C 1.53185 * 109.54267 * 297.07941 * 21 20 16 23 23 C 1.53101 * 109.15501 * 183.24284 * 22 21 20 24 24 O 1.42902 * 109.48919 * 57.47784 * 23 22 21 25 25 C 1.42895 * 114.09491 * 298.88464 * 24 23 22 26 26 C 1.53092 * 109.41835 * 61.16018 * 25 24 23 27 27 H 1.09001 * 109.46968 * 299.99874 * 1 2 3 28 28 H 1.08999 * 109.47189 * 60.00319 * 1 2 3 29 29 H 1.09000 * 109.46769 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47128 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46933 * 299.99838 * 3 2 1 32 32 H 1.08995 * 109.47459 * 59.99930 * 3 2 1 33 33 H 1.09000 * 109.47627 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.47038 * 300.00309 * 4 2 1 35 35 H 0.97008 * 119.99892 * 179.97438 * 8 7 5 36 36 H 1.08993 * 109.46884 * 180.02562 * 13 2 1 37 37 H 1.08999 * 109.46979 * 59.99793 * 13 2 1 38 38 H 1.00902 * 110.99814 * 303.95201 * 14 13 2 39 39 H 1.08991 * 109.47474 * 59.99415 * 15 14 13 40 40 H 1.09006 * 109.46574 * 299.99359 * 15 14 13 41 41 H 1.09001 * 109.47457 * 307.66792 * 18 16 15 42 42 H 1.08996 * 109.46540 * 67.66534 * 18 16 15 43 43 H 0.96700 * 114.00732 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.46904 * 292.45834 * 20 16 15 45 45 H 1.08992 * 109.47280 * 52.46580 * 20 16 15 46 46 H 1.08997 * 109.54909 * 57.25469 * 21 20 16 47 47 H 1.08999 * 109.51948 * 303.06179 * 22 21 20 48 48 H 1.08997 * 109.51900 * 63.24975 * 22 21 20 49 49 H 1.08994 * 109.40850 * 297.48887 * 23 22 21 50 50 H 1.09008 * 109.48917 * 177.50833 * 23 22 21 51 51 H 1.08996 * 109.48753 * 301.17339 * 25 24 23 52 52 H 1.09008 * 109.48737 * 181.14555 * 25 24 23 53 53 H 1.08994 * 109.52749 * 182.48211 * 26 25 24 54 54 H 1.09006 * 109.57701 * 62.32304 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9164 0.8669 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6274 -1.5509 -3.8525 9 14 1.2491 0.3992 -5.2572 10 1 0.4245 1.5662 -4.8531 11 1 2.4044 0.8661 -6.0650 12 1 0.4243 -0.5339 -6.0660 13 6 2.0401 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0218 -0.6945 3.6704 16 6 1.4922 0.0533 4.8956 17 1 1.7808 1.1027 4.8335 18 6 -0.0334 -0.0544 4.9388 19 8 -0.5412 0.7879 5.9755 20 6 2.0833 -0.5638 6.1646 21 6 1.7061 0.2954 7.3730 22 6 2.3225 1.6897 7.2229 23 6 2.0078 2.5154 8.4731 24 8 2.5069 1.8394 9.6290 25 6 1.9293 0.5505 9.8459 26 6 2.2427 -0.3550 8.6519 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1301 -0.7217 -1.2490 34 1 1.6767 -1.7489 -1.2492 35 1 2.8617 -1.8824 -4.7336 36 1 3.1300 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2493 38 1 1.8198 0.9436 2.4402 39 1 3.1116 -0.6940 3.6870 40 1 1.6586 -1.7221 3.6874 41 1 -0.4471 0.2594 3.9804 42 1 -0.3191 -1.0873 5.1372 43 1 -1.5042 0.7694 6.0610 44 1 1.6877 -1.5708 6.2972 45 1 3.1686 -0.6086 6.0753 46 1 0.6212 0.3812 7.4351 47 1 3.4029 1.5999 7.1095 48 1 1.9027 2.1809 6.3451 49 1 0.9287 2.6403 8.5626 50 1 2.4814 3.4939 8.3915 51 1 0.8492 0.6495 9.9533 52 1 2.3463 0.1131 10.7531 53 1 1.7659 -1.3246 8.7950 54 1 3.3213 -0.4883 8.5678 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649775517.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:05 Heat of formation + Delta-G solvation = -155.347247 kcal Electronic energy + Delta-G solvation = -27352.295598 eV Core-core repulsion = 23707.619743 eV Total energy + Delta-G solvation = -3644.675856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 313.240 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.56485 -39.38954 -38.39565 -36.26070 -35.48131 -34.30801 -32.34736 -31.87739 -29.06149 -28.04241 -27.88675 -26.86905 -25.66273 -24.52501 -24.22846 -23.17623 -21.24920 -20.65948 -19.45265 -18.33713 -18.07241 -17.09034 -16.92704 -16.85128 -16.64852 -16.41830 -15.66412 -15.55578 -15.47972 -15.08420 -14.87932 -14.58423 -14.32671 -14.15574 -14.03293 -13.84171 -13.42100 -13.33872 -13.27279 -12.90710 -12.78839 -12.69228 -12.54883 -12.39883 -12.30577 -12.22269 -12.15934 -12.09894 -11.87081 -11.67864 -11.40299 -11.32320 -11.19300 -11.04130 -10.85521 -10.71231 -10.51548 -10.42348 -10.30203 -9.27675 -8.14457 -6.21259 1.39753 1.40855 1.52931 2.43301 3.03003 3.19516 3.22879 3.39699 3.83749 3.87772 4.04268 4.11148 4.14398 4.17274 4.23740 4.30511 4.37994 4.41970 4.46473 4.57685 4.65695 4.71088 4.72736 4.78395 4.79278 4.83304 4.84259 4.88901 4.95563 4.97972 5.02041 5.08778 5.10720 5.15999 5.20395 5.21665 5.22982 5.26952 5.34368 5.49258 5.52329 5.54400 5.59402 5.66300 5.76516 5.87809 5.93105 6.09266 6.32899 6.36966 6.52777 6.94280 7.03346 7.46062 8.98019 Molecular weight = 313.24amu Principal moments of inertia in cm(-1) A = 0.033043 B = 0.002145 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.181120 B =13051.060965 C =13116.024811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.054 4.054 3 C -0.122 4.122 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.066 0.934 7 C -0.007 4.007 8 N -0.938 5.938 9 Si 0.957 3.043 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.083 3.917 14 N -0.679 5.679 15 C 0.064 3.936 16 C -0.076 4.076 17 H 0.074 0.926 18 C 0.091 3.909 19 O -0.576 6.576 20 C -0.099 4.099 21 C -0.092 4.092 22 C -0.141 4.141 23 C 0.060 3.940 24 O -0.409 6.409 25 C 0.058 3.942 26 C -0.150 4.150 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.068 0.932 33 H -0.018 1.018 34 H -0.016 1.016 35 H 0.259 0.741 36 H 0.015 0.985 37 H 0.057 0.943 38 H 0.343 0.657 39 H 0.030 0.970 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.388 0.612 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.105 0.895 47 H 0.052 0.948 48 H 0.074 0.926 49 H 0.055 0.945 50 H 0.094 0.906 51 H 0.056 0.944 52 H 0.100 0.900 53 H 0.081 0.919 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.837 4.643 26.953 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.055 4.055 3 C -0.180 4.180 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.084 0.916 7 C -0.203 4.203 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.209 1.209 13 C -0.047 4.047 14 N -0.311 5.311 15 C -0.065 4.065 16 C -0.095 4.095 17 H 0.092 0.908 18 C 0.014 3.986 19 O -0.384 6.384 20 C -0.137 4.137 21 C -0.110 4.110 22 C -0.179 4.179 23 C -0.016 4.016 24 O -0.328 6.328 25 C -0.019 4.019 26 C -0.188 4.188 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.001 0.999 34 H 0.002 0.998 35 H 0.068 0.932 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.162 0.838 39 H 0.048 0.952 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.237 0.763 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.122 0.878 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.073 0.927 50 H 0.112 0.888 51 H 0.074 0.926 52 H 0.118 0.882 53 H 0.099 0.901 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.601 4.420 27.031 27.773 hybrid contribution 0.402 -0.175 -1.722 1.777 sum -4.199 4.245 25.308 26.003 Atomic orbital electron populations 1.21494 0.94195 1.00086 1.00531 1.20480 0.96360 0.95486 0.93126 1.21686 0.99369 0.95724 1.01192 1.19023 0.93899 0.94137 0.92844 1.21648 1.30011 1.11879 0.91411 0.91570 1.25941 0.95786 0.95962 1.02648 1.70119 1.38935 1.24972 1.23939 0.85514 0.78094 0.78810 0.79347 1.18419 1.20898 1.20864 1.21798 0.95689 0.97544 0.89629 1.60539 1.63323 1.06502 1.00724 1.21958 0.97015 0.98645 0.88911 1.21119 0.94686 1.00295 0.93427 0.90807 1.22036 0.93382 0.93031 0.90160 1.86416 1.27557 1.68827 1.55637 1.21544 0.99885 0.98943 0.93369 1.21398 1.02688 0.93652 0.93239 1.22152 1.00330 0.96920 0.98473 1.22632 0.98869 0.95591 0.84527 1.87875 1.67007 1.31694 1.46256 1.22683 0.98067 0.82865 0.98248 1.22254 1.01438 0.99649 0.95446 0.91249 0.94400 0.95075 0.94627 0.93509 0.91357 0.99917 0.99764 0.93206 0.96712 0.92496 0.83797 0.95191 0.91205 0.93046 0.93934 0.76295 0.91657 0.92723 0.87772 0.92925 0.90720 0.92681 0.88765 0.92592 0.88203 0.90073 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.90 8.06 71.98 0.58 -3.32 16 2 C -0.05 -2.10 0.60 -52.18 -0.03 -2.14 16 3 C -0.12 -4.34 7.89 71.98 0.57 -3.78 16 4 C 0.04 1.99 4.04 29.85 0.12 2.11 16 5 C -0.51 -28.20 7.65 25.60 0.20 -28.00 16 6 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 7 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 8 N -0.94 -57.42 13.29 21.45 0.28 -57.14 16 9 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.08 2.74 4.65 86.30 0.40 3.14 16 14 N -0.68 -17.25 5.05 -513.88 -2.59 -19.85 16 15 C 0.06 1.37 5.07 86.30 0.44 1.81 16 16 C -0.08 -1.36 2.21 -10.80 -0.02 -1.38 16 17 H 0.07 1.42 6.24 -2.38 -0.01 1.40 16 18 C 0.09 1.53 6.36 71.98 0.46 1.99 16 19 O -0.58 -8.29 10.44 -148.98 -1.56 -9.84 16 20 C -0.10 -1.61 4.17 30.59 0.13 -1.49 16 21 C -0.09 -1.44 1.88 -10.67 -0.02 -1.46 16 22 C -0.14 -2.39 5.07 30.69 0.16 -2.23 16 23 C 0.06 1.00 6.84 72.02 0.49 1.50 16 24 O -0.41 -8.06 10.77 -148.98 -1.60 -9.67 16 25 C 0.06 0.85 6.84 72.01 0.49 1.34 16 26 C -0.15 -2.17 5.43 30.69 0.17 -2.01 16 27 H 0.07 2.17 7.60 -2.39 -0.02 2.15 16 28 H 0.04 1.50 6.62 -2.39 -0.02 1.49 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16 32 H 0.07 1.94 6.57 -2.39 -0.02 1.92 16 33 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 34 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 35 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 36 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.34 8.31 6.77 -89.69 -0.61 7.70 16 39 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.05 1.00 7.55 -2.39 -0.02 0.99 16 42 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 43 H 0.39 2.80 9.12 -74.06 -0.68 2.13 16 44 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 45 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 46 H 0.10 1.71 5.22 -2.39 -0.01 1.70 16 47 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.07 1.31 6.52 -2.39 -0.02 1.29 16 49 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 51 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 53 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 54 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -64.95 401.88 0.72 -64.24 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -0.42 Total: 19.63 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 4.58 Total: -33.84 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -2.31 Total: -76.98 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -3.16 Total: -19.51 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -64.95 0.72 -64.24 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649775517.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.111 kcal (2) G-P(sol) polarization free energy of solvation -64.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds