Wall clock time and date at job start Tue Mar 31 2020 11:27:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52997 * 109.46912 * 2 1
4 4 C 1.52995 * 109.47229 * 239.99815 * 2 1 3
5 5 C 1.50704 * 109.47163 * 59.99834 * 4 2 1
6 6 H 1.08001 * 119.99924 * 359.97438 * 5 4 2
7 7 C 1.37878 * 120.00061 * 179.97438 * 5 4 2
8 8 N 1.31512 * 119.99878 * 0.02562 * 7 5 4
9 9 Si 1.86800 * 119.99935 * 180.02562 * 7 5 4
10 10 H 1.48500 * 109.47168 * 0.02562 * 9 7 5
11 11 H 1.48499 * 109.47267 * 119.99987 * 9 7 5
12 12 H 1.48501 * 109.47216 * 240.00397 * 9 7 5
13 13 C 1.53003 * 109.47120 * 119.99897 * 2 1 3
14 14 N 1.46904 * 109.47049 * 300.00199 * 13 2 1
15 15 C 1.46902 * 110.99995 * 180.02562 * 14 13 2
16 16 C 1.52998 * 109.47148 * 180.02562 * 15 14 13
17 17 H 1.09005 * 109.46721 * 304.99131 * 16 15 14
18 18 C 1.52999 * 109.47468 * 64.99022 * 16 15 14
19 19 O 1.42894 * 109.47292 * 187.66427 * 18 16 15
20 20 C 1.52996 * 109.46949 * 184.99816 * 16 15 14
21 21 C 1.53001 * 109.46942 * 172.46708 * 20 16 15
22 22 C 1.53185 * 109.54267 * 297.07941 * 21 20 16
23 23 C 1.53101 * 109.15501 * 183.24284 * 22 21 20
24 24 O 1.42902 * 109.48919 * 57.47784 * 23 22 21
25 25 C 1.42895 * 114.09491 * 298.88464 * 24 23 22
26 26 C 1.53092 * 109.41835 * 61.16018 * 25 24 23
27 27 H 1.09001 * 109.46968 * 299.99874 * 1 2 3
28 28 H 1.08999 * 109.47189 * 60.00319 * 1 2 3
29 29 H 1.09000 * 109.46769 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47128 * 180.02562 * 3 2 1
31 31 H 1.08999 * 109.46933 * 299.99838 * 3 2 1
32 32 H 1.08995 * 109.47459 * 59.99930 * 3 2 1
33 33 H 1.09000 * 109.47627 * 180.02562 * 4 2 1
34 34 H 1.08999 * 109.47038 * 300.00309 * 4 2 1
35 35 H 0.97008 * 119.99892 * 179.97438 * 8 7 5
36 36 H 1.08993 * 109.46884 * 180.02562 * 13 2 1
37 37 H 1.08999 * 109.46979 * 59.99793 * 13 2 1
38 38 H 1.00902 * 110.99814 * 303.95201 * 14 13 2
39 39 H 1.08991 * 109.47474 * 59.99415 * 15 14 13
40 40 H 1.09006 * 109.46574 * 299.99359 * 15 14 13
41 41 H 1.09001 * 109.47457 * 307.66792 * 18 16 15
42 42 H 1.08996 * 109.46540 * 67.66534 * 18 16 15
43 43 H 0.96700 * 114.00732 * 180.02562 * 19 18 16
44 44 H 1.08999 * 109.46904 * 292.45834 * 20 16 15
45 45 H 1.08992 * 109.47280 * 52.46580 * 20 16 15
46 46 H 1.08997 * 109.54909 * 57.25469 * 21 20 16
47 47 H 1.08999 * 109.51948 * 303.06179 * 22 21 20
48 48 H 1.08997 * 109.51900 * 63.24975 * 22 21 20
49 49 H 1.08994 * 109.40850 * 297.48887 * 23 22 21
50 50 H 1.09008 * 109.48917 * 177.50833 * 23 22 21
51 51 H 1.08996 * 109.48753 * 301.17339 * 25 24 23
52 52 H 1.09008 * 109.48737 * 181.14555 * 25 24 23
53 53 H 1.08994 * 109.52749 * 182.48211 * 26 25 24
54 54 H 1.09006 * 109.57701 * 62.32304 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 1.5377 -0.0109 -2.4797
6 1 0.9164 0.8669 -2.3806
7 6 1.8712 -0.4817 -3.7320
8 7 2.6274 -1.5509 -3.8525
9 14 1.2491 0.3992 -5.2572
10 1 0.4245 1.5662 -4.8531
11 1 2.4044 0.8661 -6.0650
12 1 0.4243 -0.5339 -6.0660
13 6 2.0401 -0.7212 1.2493
14 7 1.5503 -0.0287 2.4487
15 6 2.0218 -0.6945 3.6704
16 6 1.4922 0.0533 4.8956
17 1 1.7808 1.1027 4.8335
18 6 -0.0334 -0.0544 4.9388
19 8 -0.5412 0.7879 5.9755
20 6 2.0833 -0.5638 6.1646
21 6 1.7061 0.2954 7.3730
22 6 2.3225 1.6897 7.2229
23 6 2.0078 2.5154 8.4731
24 8 2.5069 1.8394 9.6290
25 6 1.9293 0.5505 9.8459
26 6 2.2427 -0.3550 8.6519
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 3.1300 1.4425 -0.0005
31 1 1.6766 1.9563 -0.8900
32 1 1.6767 1.9563 0.8899
33 1 3.1301 -0.7217 -1.2490
34 1 1.6767 -1.7489 -1.2492
35 1 2.8617 -1.8824 -4.7336
36 1 3.1300 -0.7208 1.2495
37 1 1.6767 -1.7489 1.2493
38 1 1.8198 0.9436 2.4402
39 1 3.1116 -0.6940 3.6870
40 1 1.6586 -1.7221 3.6874
41 1 -0.4471 0.2594 3.9804
42 1 -0.3191 -1.0873 5.1372
43 1 -1.5042 0.7694 6.0610
44 1 1.6877 -1.5708 6.2972
45 1 3.1686 -0.6086 6.0753
46 1 0.6212 0.3812 7.4351
47 1 3.4029 1.5999 7.1095
48 1 1.9027 2.1809 6.3451
49 1 0.9287 2.6403 8.5626
50 1 2.4814 3.4939 8.3915
51 1 0.8492 0.6495 9.9533
52 1 2.3463 0.1131 10.7531
53 1 1.7659 -1.3246 8.7950
54 1 3.3213 -0.4883 8.5678
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001649775517.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:27:05
Heat of formation + Delta-G solvation = -155.347247 kcal
Electronic energy + Delta-G solvation = -27352.295598 eV
Core-core repulsion = 23707.619743 eV
Total energy + Delta-G solvation = -3644.675856 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 313.240 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.56485 -39.38954 -38.39565 -36.26070 -35.48131 -34.30801 -32.34736 -31.87739
-29.06149 -28.04241 -27.88675 -26.86905 -25.66273 -24.52501 -24.22846 -23.17623
-21.24920 -20.65948 -19.45265 -18.33713 -18.07241 -17.09034 -16.92704 -16.85128
-16.64852 -16.41830 -15.66412 -15.55578 -15.47972 -15.08420 -14.87932 -14.58423
-14.32671 -14.15574 -14.03293 -13.84171 -13.42100 -13.33872 -13.27279 -12.90710
-12.78839 -12.69228 -12.54883 -12.39883 -12.30577 -12.22269 -12.15934 -12.09894
-11.87081 -11.67864 -11.40299 -11.32320 -11.19300 -11.04130 -10.85521 -10.71231
-10.51548 -10.42348 -10.30203 -9.27675 -8.14457 -6.21259 1.39753 1.40855
1.52931 2.43301 3.03003 3.19516 3.22879 3.39699 3.83749 3.87772
4.04268 4.11148 4.14398 4.17274 4.23740 4.30511 4.37994 4.41970
4.46473 4.57685 4.65695 4.71088 4.72736 4.78395 4.79278 4.83304
4.84259 4.88901 4.95563 4.97972 5.02041 5.08778 5.10720 5.15999
5.20395 5.21665 5.22982 5.26952 5.34368 5.49258 5.52329 5.54400
5.59402 5.66300 5.76516 5.87809 5.93105 6.09266 6.32899 6.36966
6.52777 6.94280 7.03346 7.46062 8.98019
Molecular weight = 313.24amu
Principal moments of inertia in cm(-1)
A = 0.033043 B = 0.002145 C = 0.002134
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 847.181120 B =13051.060965 C =13116.024811
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C -0.054 4.054
3 C -0.122 4.122
4 C 0.038 3.962
5 C -0.511 4.511
6 H 0.066 0.934
7 C -0.007 4.007
8 N -0.938 5.938
9 Si 0.957 3.043
10 H -0.260 1.260
11 H -0.283 1.283
12 H -0.283 1.283
13 C 0.083 3.917
14 N -0.679 5.679
15 C 0.064 3.936
16 C -0.076 4.076
17 H 0.074 0.926
18 C 0.091 3.909
19 O -0.576 6.576
20 C -0.099 4.099
21 C -0.092 4.092
22 C -0.141 4.141
23 C 0.060 3.940
24 O -0.409 6.409
25 C 0.058 3.942
26 C -0.150 4.150
27 H 0.069 0.931
28 H 0.037 0.963
29 H 0.030 0.970
30 H 0.035 0.965
31 H 0.046 0.954
32 H 0.068 0.932
33 H -0.018 1.018
34 H -0.016 1.016
35 H 0.259 0.741
36 H 0.015 0.985
37 H 0.057 0.943
38 H 0.343 0.657
39 H 0.030 0.970
40 H 0.069 0.931
41 H 0.051 0.949
42 H 0.042 0.958
43 H 0.388 0.612
44 H 0.065 0.935
45 H 0.054 0.946
46 H 0.105 0.895
47 H 0.052 0.948
48 H 0.074 0.926
49 H 0.055 0.945
50 H 0.094 0.906
51 H 0.056 0.944
52 H 0.100 0.900
53 H 0.081 0.919
54 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.837 4.643 26.953 27.774
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.055 4.055
3 C -0.180 4.180
4 C 0.001 3.999
5 C -0.549 4.549
6 H 0.084 0.916
7 C -0.203 4.203
8 N -0.580 5.580
9 Si 0.782 3.218
10 H -0.184 1.184
11 H -0.209 1.209
12 H -0.209 1.209
13 C -0.047 4.047
14 N -0.311 5.311
15 C -0.065 4.065
16 C -0.095 4.095
17 H 0.092 0.908
18 C 0.014 3.986
19 O -0.384 6.384
20 C -0.137 4.137
21 C -0.110 4.110
22 C -0.179 4.179
23 C -0.016 4.016
24 O -0.328 6.328
25 C -0.019 4.019
26 C -0.188 4.188
27 H 0.088 0.912
28 H 0.056 0.944
29 H 0.049 0.951
30 H 0.054 0.946
31 H 0.065 0.935
32 H 0.086 0.914
33 H 0.001 0.999
34 H 0.002 0.998
35 H 0.068 0.932
36 H 0.033 0.967
37 H 0.075 0.925
38 H 0.162 0.838
39 H 0.048 0.952
40 H 0.088 0.912
41 H 0.070 0.930
42 H 0.061 0.939
43 H 0.237 0.763
44 H 0.083 0.917
45 H 0.073 0.927
46 H 0.122 0.878
47 H 0.071 0.929
48 H 0.093 0.907
49 H 0.073 0.927
50 H 0.112 0.888
51 H 0.074 0.926
52 H 0.118 0.882
53 H 0.099 0.901
54 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -4.601 4.420 27.031 27.773
hybrid contribution 0.402 -0.175 -1.722 1.777
sum -4.199 4.245 25.308 26.003
Atomic orbital electron populations
1.21494 0.94195 1.00086 1.00531 1.20480 0.96360 0.95486 0.93126
1.21686 0.99369 0.95724 1.01192 1.19023 0.93899 0.94137 0.92844
1.21648 1.30011 1.11879 0.91411 0.91570 1.25941 0.95786 0.95962
1.02648 1.70119 1.38935 1.24972 1.23939 0.85514 0.78094 0.78810
0.79347 1.18419 1.20898 1.20864 1.21798 0.95689 0.97544 0.89629
1.60539 1.63323 1.06502 1.00724 1.21958 0.97015 0.98645 0.88911
1.21119 0.94686 1.00295 0.93427 0.90807 1.22036 0.93382 0.93031
0.90160 1.86416 1.27557 1.68827 1.55637 1.21544 0.99885 0.98943
0.93369 1.21398 1.02688 0.93652 0.93239 1.22152 1.00330 0.96920
0.98473 1.22632 0.98869 0.95591 0.84527 1.87875 1.67007 1.31694
1.46256 1.22683 0.98067 0.82865 0.98248 1.22254 1.01438 0.99649
0.95446 0.91249 0.94400 0.95075 0.94627 0.93509 0.91357 0.99917
0.99764 0.93206 0.96712 0.92496 0.83797 0.95191 0.91205 0.93046
0.93934 0.76295 0.91657 0.92723 0.87772 0.92925 0.90720 0.92681
0.88765 0.92592 0.88203 0.90073 0.92359
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -3.90 8.06 71.98 0.58 -3.32 16
2 C -0.05 -2.10 0.60 -52.18 -0.03 -2.14 16
3 C -0.12 -4.34 7.89 71.98 0.57 -3.78 16
4 C 0.04 1.99 4.04 29.85 0.12 2.11 16
5 C -0.51 -28.20 7.65 25.60 0.20 -28.00 16
6 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16
7 C -0.01 -0.39 5.46 84.66 0.46 0.07 16
8 N -0.94 -57.42 13.29 21.45 0.28 -57.14 16
9 Si 0.96 44.44 29.54 68.60 2.03 46.47 16
10 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16
11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16
12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16
13 C 0.08 2.74 4.65 86.30 0.40 3.14 16
14 N -0.68 -17.25 5.05 -513.88 -2.59 -19.85 16
15 C 0.06 1.37 5.07 86.30 0.44 1.81 16
16 C -0.08 -1.36 2.21 -10.80 -0.02 -1.38 16
17 H 0.07 1.42 6.24 -2.38 -0.01 1.40 16
18 C 0.09 1.53 6.36 71.98 0.46 1.99 16
19 O -0.58 -8.29 10.44 -148.98 -1.56 -9.84 16
20 C -0.10 -1.61 4.17 30.59 0.13 -1.49 16
21 C -0.09 -1.44 1.88 -10.67 -0.02 -1.46 16
22 C -0.14 -2.39 5.07 30.69 0.16 -2.23 16
23 C 0.06 1.00 6.84 72.02 0.49 1.50 16
24 O -0.41 -8.06 10.77 -148.98 -1.60 -9.67 16
25 C 0.06 0.85 6.84 72.01 0.49 1.34 16
26 C -0.15 -2.17 5.43 30.69 0.17 -2.01 16
27 H 0.07 2.17 7.60 -2.39 -0.02 2.15 16
28 H 0.04 1.50 6.62 -2.39 -0.02 1.49 16
29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16
30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16
31 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16
32 H 0.07 1.94 6.57 -2.39 -0.02 1.92 16
33 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16
34 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16
35 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16
36 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16
37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16
38 H 0.34 8.31 6.77 -89.69 -0.61 7.70 16
39 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16
40 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16
41 H 0.05 1.00 7.55 -2.39 -0.02 0.99 16
42 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16
43 H 0.39 2.80 9.12 -74.06 -0.68 2.13 16
44 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16
45 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16
46 H 0.10 1.71 5.22 -2.39 -0.01 1.70 16
47 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16
48 H 0.07 1.31 6.52 -2.39 -0.02 1.29 16
49 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16
50 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16
51 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
52 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16
53 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16
54 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16
Total: -1.00 -64.95 401.88 0.72 -64.24
By element:
Atomic # 1 Polarization: 20.06 SS G_CDS: -0.42 Total: 19.63 kcal
Atomic # 6 Polarization: -38.43 SS G_CDS: 4.58 Total: -33.84 kcal
Atomic # 7 Polarization: -74.68 SS G_CDS: -2.31 Total: -76.98 kcal
Atomic # 8 Polarization: -16.35 SS G_CDS: -3.16 Total: -19.51 kcal
Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal
Total: -64.95 0.72 -64.24 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001649775517.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -91.111 kcal
(2) G-P(sol) polarization free energy of solvation -64.953 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.064 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.236 kcal
(6) G-S(sol) free energy of system = (1) + (5) -155.347 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds