Wall clock time and date at job start Tue Mar 31 2020 11:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47265 * 2 1 4 4 H 1.09006 * 109.47196 * 296.33189 * 3 2 1 5 5 C 1.50693 * 109.46988 * 56.33232 * 3 2 1 6 6 C 1.38240 * 120.00150 * 64.22529 * 5 3 2 7 7 C 1.38236 * 119.99861 * 179.78884 * 6 5 3 8 8 C 1.38237 * 120.00228 * 0.46085 * 7 6 5 9 9 C 1.38232 * 119.99857 * 359.76774 * 8 7 6 10 10 C 1.38235 * 120.00113 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.46974 * 176.33223 * 3 2 1 12 12 H 1.09000 * 110.46139 * 304.89700 * 11 3 2 13 13 C 1.54379 * 110.41058 * 182.48174 * 11 3 2 14 14 C 1.54257 * 105.15435 * 217.41891 * 13 11 3 15 15 C 1.54384 * 105.05683 * 359.95288 * 14 13 11 16 16 N 1.48561 * 104.59600 * 23.85003 * 15 14 13 17 17 C 1.46898 * 110.99928 * 200.96301 * 16 15 14 18 18 C 1.53006 * 109.46977 * 262.88119 * 17 16 15 19 19 C 1.50697 * 115.55135 * 40.06184 * 18 17 16 20 20 H 1.08003 * 120.00058 * 1.92545 * 19 18 17 21 21 C 1.37876 * 120.00437 * 181.92772 * 19 18 17 22 22 N 1.31517 * 119.99574 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00485 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47101 * 89.99769 * 23 21 19 25 25 H 1.48500 * 109.47444 * 209.99883 * 23 21 19 26 26 H 1.48499 * 109.47232 * 329.99994 * 23 21 19 27 27 C 1.53003 * 117.49615 * 254.35833 * 18 17 16 28 28 C 1.53002 * 117.49917 * 185.73661 * 18 17 16 29 29 H 1.08990 * 109.47317 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46891 * 299.99936 * 1 2 3 31 31 H 1.09003 * 109.47345 * 59.99644 * 1 2 3 32 32 H 1.09004 * 109.46407 * 240.00079 * 2 1 3 33 33 H 1.08997 * 109.47043 * 120.00674 * 2 1 3 34 34 H 1.07996 * 119.99557 * 359.97438 * 6 5 3 35 35 H 1.08000 * 119.99784 * 180.25227 * 7 6 5 36 36 H 1.07990 * 119.99984 * 179.79534 * 8 7 6 37 37 H 1.08004 * 120.00076 * 179.97438 * 9 8 7 38 38 H 1.08007 * 120.00026 * 179.97438 * 10 9 8 39 39 H 1.09007 * 110.32338 * 98.47418 * 13 11 3 40 40 H 1.09004 * 110.32565 * 336.36902 * 13 11 3 41 41 H 1.08994 * 110.32649 * 118.84450 * 14 13 11 42 42 H 1.08997 * 110.32643 * 240.95727 * 14 13 11 43 43 H 1.08997 * 110.40905 * 142.63381 * 15 14 13 44 44 H 1.09007 * 110.41098 * 264.95137 * 15 14 13 45 45 H 1.08996 * 109.47491 * 22.87334 * 17 16 15 46 46 H 1.08996 * 109.47445 * 142.88372 * 17 16 15 47 47 H 0.97001 * 120.00438 * 180.02562 * 22 21 19 48 48 H 1.08995 * 117.50161 * 359.97438 * 27 18 17 49 49 H 1.09004 * 117.49825 * 145.02120 * 27 18 17 50 50 H 1.08996 * 117.49669 * 214.97642 * 28 18 17 51 51 H 1.08998 * 117.49625 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7314 1.9370 -0.9211 5 6 1.4649 2.1786 1.1825 6 6 1.7927 1.7865 2.4669 7 6 1.2686 2.4646 3.5515 8 6 0.4091 3.5287 3.3519 9 6 0.0776 3.9178 2.0676 10 6 0.6051 3.2425 0.9829 11 6 3.5673 1.4434 0.0923 12 1 3.8967 0.8774 0.9636 13 6 4.1019 2.8902 0.1564 14 6 5.4031 2.8764 -0.6718 15 6 5.5478 1.4214 -1.1672 16 7 4.1645 0.8800 -1.1478 17 6 4.1744 -0.5884 -1.1076 18 6 3.9943 -1.1385 -2.5239 19 6 4.7350 -0.3985 -3.6078 20 1 5.3668 0.4399 -3.3543 21 6 4.6060 -0.7916 -4.9230 22 7 3.8361 -1.8122 -5.2317 23 14 5.5246 0.1252 -6.2663 24 1 6.8566 -0.4990 -6.4698 25 1 4.7486 0.0589 -7.5307 26 1 5.6991 1.5447 -5.8665 27 6 2.6327 -1.7382 -2.8810 28 6 3.8424 -2.6530 -2.6795 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.4607 0.9523 2.6229 35 1 1.5279 2.1608 4.5550 36 1 -0.0030 4.0563 4.1993 37 1 -0.5943 4.7489 1.9116 38 1 0.3457 3.5463 -0.0206 39 1 4.3131 3.1704 1.1885 40 1 3.3810 3.5801 -0.2825 41 1 5.3204 3.5580 -1.5184 42 1 6.2527 3.1514 -0.0468 43 1 5.9491 1.4029 -2.1804 44 1 6.1900 0.8528 -0.4944 45 1 5.1249 -0.9344 -0.7017 46 1 3.3595 -0.9401 -0.4749 47 1 3.7456 -2.0891 -6.1569 48 1 1.8654 -1.7411 -2.1069 49 1 2.2724 -1.5973 -3.9001 50 1 4.2779 -3.1140 -3.5660 51 1 3.8712 -3.2575 -1.7730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652583250.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:59 Heat of formation + Delta-G solvation = 64.103597 kcal Electronic energy + Delta-G solvation = -27642.768018 eV Core-core repulsion = 24314.917184 eV Total energy + Delta-G solvation = -3327.850833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.03449 -38.41312 -36.17572 -34.87537 -31.97461 -30.93875 -30.86250 -30.35792 -28.92932 -25.71820 -25.37438 -24.58454 -22.88944 -22.30450 -20.87452 -20.39872 -20.15418 -19.47568 -18.62091 -16.88933 -16.15344 -15.70661 -15.26737 -14.95980 -14.62951 -14.51044 -14.22014 -13.63835 -13.49076 -13.40391 -13.30999 -12.74235 -12.66272 -12.41141 -12.36154 -12.14584 -11.71954 -11.65912 -11.29633 -11.15141 -11.01072 -10.97305 -10.94333 -10.68715 -10.56092 -10.40356 -10.22035 -10.20762 -10.06706 -9.70413 -9.65809 -9.19544 -8.88184 -8.66693 -8.56883 -8.21028 -7.90436 -7.56549 -5.81792 -3.83939 1.42897 1.43988 3.34614 3.42157 3.45199 3.83760 4.47500 4.50391 4.81480 4.94678 4.99981 5.06528 5.11194 5.18106 5.21905 5.36611 5.40574 5.50641 5.53899 5.60067 5.62926 5.66159 5.86954 5.91977 5.97147 6.00648 6.04400 6.11655 6.12460 6.16257 6.22309 6.28265 6.31993 6.41274 6.44560 6.50602 6.52332 6.53542 6.56726 6.58241 6.68183 6.77144 6.86065 6.89573 7.06631 7.15108 7.28436 7.37143 7.66847 7.78529 7.97970 8.18848 8.36156 8.68917 9.11831 9.69193 11.14327 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.017748 B = 0.004181 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.302454 B = 6695.174994 C = 7335.282166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C -0.032 4.032 4 H 0.088 0.912 5 C -0.051 4.051 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.134 4.134 9 C -0.120 4.120 10 C -0.118 4.118 11 C 0.068 3.932 12 H 0.041 0.959 13 C -0.113 4.113 14 C -0.126 4.126 15 C 0.035 3.965 16 N -0.474 5.474 17 C 0.073 3.927 18 C 0.033 3.967 19 C -0.451 4.451 20 H 0.068 0.932 21 C 0.053 3.947 22 N -0.885 5.885 23 Si 0.889 3.111 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.275 1.275 27 C -0.186 4.186 28 C -0.196 4.196 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.031 0.969 45 H 0.026 0.974 46 H 0.064 0.936 47 H 0.255 0.745 48 H 0.041 0.959 49 H 0.112 0.888 50 H 0.104 0.896 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.486 8.802 15.025 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.051 4.051 4 H 0.106 0.894 5 C -0.052 4.052 6 C -0.135 4.135 7 C -0.138 4.138 8 C -0.152 4.152 9 C -0.138 4.138 10 C -0.136 4.136 11 C -0.041 4.041 12 H 0.059 0.941 13 C -0.151 4.151 14 C -0.164 4.164 15 C -0.092 4.092 16 N -0.197 5.197 17 C -0.055 4.055 18 C 0.032 3.968 19 C -0.489 4.489 20 H 0.086 0.914 21 C -0.147 4.147 22 N -0.524 5.524 23 Si 0.718 3.282 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.200 1.200 27 C -0.224 4.224 28 C -0.235 4.235 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.070 0.930 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.050 0.950 45 H 0.044 0.956 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.130 0.870 50 H 0.122 0.878 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.834 8.849 14.367 17.552 hybrid contribution 0.845 0.047 0.007 0.846 sum -3.989 8.896 14.375 17.369 Atomic orbital electron populations 1.21751 0.96279 1.01083 1.01319 1.22082 0.95699 0.95878 1.03590 1.20136 0.93630 0.95737 0.95567 0.89360 1.19940 0.95634 0.94938 0.94691 1.21002 1.00303 0.99978 0.92199 1.21086 0.97872 0.96313 0.98571 1.21043 0.99305 0.97983 0.96894 1.21095 1.00091 0.99826 0.92769 1.21112 0.97653 0.95896 0.98907 1.22675 0.93748 0.94995 0.92669 0.94118 1.22253 0.97222 0.96529 0.99125 1.22317 0.96881 0.97799 0.99378 1.23290 0.90661 0.93315 1.01959 1.65262 1.14522 1.07888 1.32071 1.22185 0.98711 0.86442 0.98127 1.18842 0.96431 0.90558 0.90935 1.20720 1.25202 1.13226 0.89711 0.91377 1.25003 0.95714 0.95307 0.98650 1.70019 1.38322 1.26413 1.17664 0.86632 0.79589 0.80297 0.81673 1.21100 1.21517 1.19955 1.22916 0.90774 1.06977 1.01722 1.22789 1.05494 0.95243 0.99975 0.93219 0.93363 0.92750 0.87667 0.93033 0.86505 0.86609 0.86704 0.86519 0.86172 0.92397 0.91360 0.91355 0.92357 0.88713 0.95036 0.95593 0.91740 0.93494 0.94055 0.87026 0.87782 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.61 37.16 0.36 -1.68 16 2 C -0.14 -2.06 3.85 -26.73 -0.10 -2.16 16 3 C -0.03 -0.46 1.81 -91.78 -0.17 -0.63 16 4 H 0.09 1.43 7.88 -51.93 -0.41 1.02 16 5 C -0.05 -0.65 2.53 -104.62 -0.27 -0.92 16 6 C -0.12 -1.40 8.83 -39.58 -0.35 -1.75 16 7 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 8 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 9 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 10 C -0.12 -1.40 9.67 -39.58 -0.38 -1.78 16 11 C 0.07 1.04 1.68 -65.98 -0.11 0.93 16 12 H 0.04 0.62 7.27 -51.93 -0.38 0.24 16 13 C -0.11 -1.58 5.81 -25.35 -0.15 -1.72 16 14 C -0.13 -1.81 7.00 -25.35 -0.18 -1.99 16 15 C 0.04 0.62 5.91 -2.18 -0.01 0.60 16 16 N -0.47 -8.82 4.46 -222.01 -0.99 -9.81 16 17 C 0.07 1.47 4.44 -3.82 -0.02 1.45 16 18 C 0.03 0.80 2.48 -155.66 -0.39 0.42 16 19 C -0.45 -11.92 8.65 -34.44 -0.30 -12.22 16 20 H 0.07 1.76 4.65 -52.48 -0.24 1.52 16 21 C 0.05 1.43 5.28 -17.82 -0.09 1.34 16 22 N -0.88 -24.65 8.59 55.43 0.48 -24.17 16 23 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 C -0.19 -4.56 8.86 -26.73 -0.24 -4.80 16 28 C -0.20 -4.85 9.39 -26.73 -0.25 -5.10 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.63 7.11 -51.93 -0.37 0.26 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.11 1.90 2.98 -51.93 -0.15 1.74 16 33 H 0.05 0.75 7.56 -51.93 -0.39 0.35 16 34 H 0.12 1.36 7.25 -52.49 -0.38 0.98 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.12 1.35 7.95 -52.48 -0.42 0.94 16 39 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.07 0.96 7.79 -51.93 -0.40 0.55 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.85 5.72 -51.93 -0.30 1.55 16 44 H 0.03 0.53 7.59 -51.93 -0.39 0.13 16 45 H 0.03 0.53 7.36 -51.93 -0.38 0.14 16 46 H 0.06 1.22 4.25 -51.93 -0.22 1.00 16 47 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.04 0.92 6.10 -51.93 -0.32 0.60 16 49 H 0.11 3.08 6.12 -51.93 -0.32 2.76 16 50 H 0.10 2.85 6.45 -51.93 -0.33 2.51 16 51 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -27.50 375.18 -12.07 -39.57 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.35 Total: 7.72 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: -3.83 Total: -35.12 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: -0.51 Total: -33.99 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.50 -12.07 -39.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652583250.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.674 kcal (2) G-P(sol) polarization free energy of solvation -27.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds