Wall clock time and date at job start Tue Mar 31 2020 11:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47265 * 2 1 4 4 H 1.09006 * 109.47196 * 296.33189 * 3 2 1 5 5 C 1.50693 * 109.46988 * 56.33232 * 3 2 1 6 6 C 1.38240 * 120.00150 * 64.22529 * 5 3 2 7 7 C 1.38236 * 119.99861 * 179.78884 * 6 5 3 8 8 C 1.38237 * 120.00228 * 0.46085 * 7 6 5 9 9 C 1.38232 * 119.99857 * 359.76774 * 8 7 6 10 10 C 1.38235 * 120.00113 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.46974 * 176.33223 * 3 2 1 12 12 H 1.09000 * 110.46139 * 304.89700 * 11 3 2 13 13 C 1.54379 * 110.41058 * 182.48174 * 11 3 2 14 14 C 1.54257 * 105.15435 * 217.41891 * 13 11 3 15 15 C 1.54384 * 105.05683 * 359.95288 * 14 13 11 16 16 N 1.48561 * 104.59600 * 23.85003 * 15 14 13 17 17 C 1.46898 * 110.99928 * 200.96301 * 16 15 14 18 18 C 1.53006 * 109.46977 * 262.88119 * 17 16 15 19 19 C 1.50697 * 115.55135 * 40.06184 * 18 17 16 20 20 H 1.08003 * 120.00058 * 1.92545 * 19 18 17 21 21 C 1.37876 * 120.00437 * 181.92772 * 19 18 17 22 22 N 1.31517 * 119.99574 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00485 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47101 * 89.99769 * 23 21 19 25 25 H 1.48500 * 109.47444 * 209.99883 * 23 21 19 26 26 H 1.48499 * 109.47232 * 329.99994 * 23 21 19 27 27 C 1.53003 * 117.49615 * 254.35833 * 18 17 16 28 28 C 1.53002 * 117.49917 * 185.73661 * 18 17 16 29 29 H 1.08990 * 109.47317 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46891 * 299.99936 * 1 2 3 31 31 H 1.09003 * 109.47345 * 59.99644 * 1 2 3 32 32 H 1.09004 * 109.46407 * 240.00079 * 2 1 3 33 33 H 1.08997 * 109.47043 * 120.00674 * 2 1 3 34 34 H 1.07996 * 119.99557 * 359.97438 * 6 5 3 35 35 H 1.08000 * 119.99784 * 180.25227 * 7 6 5 36 36 H 1.07990 * 119.99984 * 179.79534 * 8 7 6 37 37 H 1.08004 * 120.00076 * 179.97438 * 9 8 7 38 38 H 1.08007 * 120.00026 * 179.97438 * 10 9 8 39 39 H 1.09007 * 110.32338 * 98.47418 * 13 11 3 40 40 H 1.09004 * 110.32565 * 336.36902 * 13 11 3 41 41 H 1.08994 * 110.32649 * 118.84450 * 14 13 11 42 42 H 1.08997 * 110.32643 * 240.95727 * 14 13 11 43 43 H 1.08997 * 110.40905 * 142.63381 * 15 14 13 44 44 H 1.09007 * 110.41098 * 264.95137 * 15 14 13 45 45 H 1.08996 * 109.47491 * 22.87334 * 17 16 15 46 46 H 1.08996 * 109.47445 * 142.88372 * 17 16 15 47 47 H 0.97001 * 120.00438 * 180.02562 * 22 21 19 48 48 H 1.08995 * 117.50161 * 359.97438 * 27 18 17 49 49 H 1.09004 * 117.49825 * 145.02120 * 27 18 17 50 50 H 1.08996 * 117.49669 * 214.97642 * 28 18 17 51 51 H 1.08998 * 117.49625 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7314 1.9370 -0.9211 5 6 1.4649 2.1786 1.1825 6 6 1.7927 1.7865 2.4669 7 6 1.2686 2.4646 3.5515 8 6 0.4091 3.5287 3.3519 9 6 0.0776 3.9178 2.0676 10 6 0.6051 3.2425 0.9829 11 6 3.5673 1.4434 0.0923 12 1 3.8967 0.8774 0.9636 13 6 4.1019 2.8902 0.1564 14 6 5.4031 2.8764 -0.6718 15 6 5.5478 1.4214 -1.1672 16 7 4.1645 0.8800 -1.1478 17 6 4.1744 -0.5884 -1.1076 18 6 3.9943 -1.1385 -2.5239 19 6 4.7350 -0.3985 -3.6078 20 1 5.3668 0.4399 -3.3543 21 6 4.6060 -0.7916 -4.9230 22 7 3.8361 -1.8122 -5.2317 23 14 5.5246 0.1252 -6.2663 24 1 6.8566 -0.4990 -6.4698 25 1 4.7486 0.0589 -7.5307 26 1 5.6991 1.5447 -5.8665 27 6 2.6327 -1.7382 -2.8810 28 6 3.8424 -2.6530 -2.6795 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.4607 0.9523 2.6229 35 1 1.5279 2.1608 4.5550 36 1 -0.0030 4.0563 4.1993 37 1 -0.5943 4.7489 1.9116 38 1 0.3457 3.5463 -0.0206 39 1 4.3131 3.1704 1.1885 40 1 3.3810 3.5801 -0.2825 41 1 5.3204 3.5580 -1.5184 42 1 6.2527 3.1514 -0.0468 43 1 5.9491 1.4029 -2.1804 44 1 6.1900 0.8528 -0.4944 45 1 5.1249 -0.9344 -0.7017 46 1 3.3595 -0.9401 -0.4749 47 1 3.7456 -2.0891 -6.1569 48 1 1.8654 -1.7411 -2.1069 49 1 2.2724 -1.5973 -3.9001 50 1 4.2779 -3.1140 -3.5660 51 1 3.8712 -3.2575 -1.7730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652583250.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:59 Heat of formation + Delta-G solvation = 52.941445 kcal Electronic energy + Delta-G solvation = -27643.252045 eV Core-core repulsion = 24314.917184 eV Total energy + Delta-G solvation = -3328.334861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.14558 -39.57296 -37.96532 -35.98827 -33.78073 -32.51817 -31.69068 -31.45285 -30.04562 -27.67659 -26.68912 -26.02786 -23.86048 -23.28010 -22.57405 -21.91443 -21.35198 -20.83883 -20.23461 -18.03443 -17.77011 -17.12047 -16.55101 -16.32222 -16.06979 -15.56402 -15.36440 -15.17146 -14.93822 -14.58963 -14.36852 -14.13362 -13.98943 -13.59592 -13.52210 -13.26644 -13.21041 -12.94039 -12.83224 -12.78394 -12.52509 -12.43562 -12.31399 -11.97606 -11.95514 -11.84456 -11.67800 -11.60158 -11.36018 -11.31296 -11.17091 -10.87056 -10.61138 -10.15371 -9.87901 -9.71077 -9.45686 -9.02240 -7.88430 -5.95630 0.58060 0.60957 1.42313 1.44823 1.53511 2.49616 2.96859 3.08655 3.29286 3.68945 3.87562 3.93334 4.03379 4.11529 4.20028 4.24990 4.28049 4.35817 4.38901 4.41770 4.47518 4.52717 4.61312 4.71201 4.72315 4.75447 4.78040 4.82578 4.93130 5.00119 5.01628 5.04407 5.09711 5.13680 5.17271 5.21811 5.26905 5.28168 5.33678 5.36667 5.38457 5.42600 5.47108 5.58549 5.70365 5.72770 5.76436 5.90602 6.06993 6.23487 6.25829 6.34230 6.45783 6.67186 7.07684 7.59659 9.05408 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.017748 B = 0.004181 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.302454 B = 6695.174994 C = 7335.282166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 C -0.023 4.023 4 H 0.065 0.935 5 C -0.060 4.060 6 C -0.126 4.126 7 C -0.122 4.122 8 C -0.133 4.133 9 C -0.122 4.122 10 C -0.130 4.130 11 C 0.071 3.929 12 H 0.047 0.953 13 C -0.105 4.105 14 C -0.118 4.118 15 C 0.033 3.967 16 N -0.496 5.496 17 C 0.084 3.916 18 C 0.027 3.973 19 C -0.464 4.464 20 H 0.071 0.929 21 C 0.005 3.995 22 N -0.907 5.907 23 Si 0.946 3.054 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.269 1.269 27 C -0.182 4.182 28 C -0.199 4.199 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.118 0.882 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.037 0.963 45 H 0.023 0.977 46 H 0.078 0.922 47 H 0.250 0.750 48 H 0.063 0.937 49 H 0.078 0.922 50 H 0.073 0.927 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 10.583 17.701 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C -0.042 4.042 4 H 0.084 0.916 5 C -0.060 4.060 6 C -0.144 4.144 7 C -0.140 4.140 8 C -0.151 4.151 9 C -0.140 4.140 10 C -0.148 4.148 11 C -0.037 4.037 12 H 0.065 0.935 13 C -0.143 4.143 14 C -0.156 4.156 15 C -0.095 4.095 16 N -0.219 5.219 17 C -0.043 4.043 18 C 0.026 3.974 19 C -0.502 4.502 20 H 0.089 0.911 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.774 3.226 24 H -0.208 1.208 25 H -0.218 1.218 26 H -0.194 1.194 27 C -0.220 4.220 28 C -0.237 4.237 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.136 0.864 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.136 0.864 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.042 0.958 46 H 0.096 0.904 47 H 0.060 0.940 48 H 0.081 0.919 49 H 0.097 0.903 50 H 0.091 0.909 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.040 10.641 17.051 20.721 hybrid contribution 0.873 -0.495 -0.793 1.279 sum -4.167 10.145 16.258 19.612 Atomic orbital electron populations 1.21679 0.95357 1.01311 1.01387 1.21983 0.96526 0.96175 1.02341 1.19962 0.93186 0.95340 0.95675 0.91642 1.19712 0.96652 0.95535 0.94145 1.21079 1.00758 1.00382 0.92227 1.21366 0.97415 0.96058 0.99170 1.21391 0.98576 0.97638 0.97512 1.21362 0.99977 1.00071 0.92594 1.21207 0.98000 0.96139 0.99498 1.22713 0.94068 0.95674 0.91241 0.93498 1.22206 0.96665 0.95390 1.00065 1.22282 0.98165 0.95481 0.99707 1.23243 0.90151 0.95485 1.00637 1.65135 1.15492 1.06793 1.34520 1.21984 0.99025 0.87743 0.95595 1.19048 0.95567 0.90016 0.92791 1.21106 1.25192 1.13363 0.90528 0.91139 1.25683 0.96672 0.96162 1.00700 1.70191 1.39470 1.27563 1.17549 0.85733 0.78409 0.79407 0.79088 1.20779 1.21832 1.19406 1.22724 0.91395 1.07300 1.00535 1.22664 1.05606 0.95861 0.99617 0.92891 0.92387 0.93522 0.90637 0.92221 0.86446 0.84514 0.84211 0.84560 0.86395 0.90517 0.91616 0.91715 0.89891 0.91469 0.94461 0.95847 0.90370 0.94001 0.91859 0.90334 0.90855 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.61 71.98 0.69 -3.07 16 2 C -0.13 -3.95 3.85 30.60 0.12 -3.83 16 3 C -0.02 -0.64 1.81 -11.54 -0.02 -0.66 16 4 H 0.07 2.14 7.88 -2.38 -0.02 2.12 16 5 C -0.06 -1.42 2.53 -19.87 -0.05 -1.47 16 6 C -0.13 -2.71 8.83 22.27 0.20 -2.51 16 7 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 8 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 9 C -0.12 -2.24 10.05 22.27 0.22 -2.01 16 10 C -0.13 -2.88 9.67 22.27 0.22 -2.67 16 11 C 0.07 2.09 1.68 45.03 0.08 2.16 16 12 H 0.05 1.33 7.27 -2.39 -0.02 1.32 16 13 C -0.11 -2.71 5.81 31.49 0.18 -2.53 16 14 C -0.12 -3.19 7.00 31.49 0.22 -2.97 16 15 C 0.03 1.12 5.91 86.45 0.51 1.63 16 16 N -0.50 -18.31 4.46 -856.29 -3.82 -22.12 16 17 C 0.08 3.40 4.44 86.31 0.38 3.78 16 18 C 0.03 1.31 2.48 -52.92 -0.13 1.18 16 19 C -0.46 -25.07 8.65 25.60 0.22 -24.85 16 20 H 0.07 3.71 4.65 -2.91 -0.01 3.70 16 21 C 0.01 0.28 5.28 84.65 0.45 0.72 16 22 N -0.91 -52.33 8.59 21.45 0.18 -52.14 16 23 Si 0.95 44.47 29.54 68.60 2.03 46.49 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 26 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 27 C -0.18 -9.12 8.86 30.60 0.27 -8.85 16 28 C -0.20 -10.00 9.39 30.60 0.29 -9.71 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.43 7.11 -2.39 -0.02 1.42 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 2.71 2.98 -2.38 -0.01 2.70 16 33 H 0.06 1.64 7.56 -2.39 -0.02 1.63 16 34 H 0.12 2.45 7.25 -2.91 -0.02 2.43 16 35 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.14 1.63 8.06 -2.92 -0.02 1.60 16 37 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.12 2.57 7.95 -2.91 -0.02 2.55 16 39 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.07 1.73 7.79 -2.39 -0.02 1.72 16 41 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 2.65 5.72 -2.39 -0.01 2.64 16 44 H 0.04 1.22 7.59 -2.38 -0.02 1.20 16 45 H 0.02 0.94 7.36 -2.39 -0.02 0.92 16 46 H 0.08 2.90 4.25 -2.39 -0.01 2.89 16 47 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 48 H 0.06 2.85 6.10 -2.39 -0.01 2.83 16 49 H 0.08 4.50 6.12 -2.38 -0.01 4.48 16 50 H 0.07 4.15 6.45 -2.39 -0.02 4.14 16 51 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -60.14 375.18 3.59 -56.55 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.90 Total: 30.86 kcal Atomic # 6 Polarization: -63.93 SS G_CDS: 4.29 Total: -59.64 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -3.63 Total: -74.27 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -60.14 3.59 -56.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652583250.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.489 kcal (2) G-P(sol) polarization free energy of solvation -60.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds