Wall clock time and date at job start Tue Mar 31 2020 10:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86795 * 120.00506 * 2 1 4 4 H 1.48501 * 109.47265 * 270.00225 * 3 2 1 5 5 H 1.48506 * 109.46680 * 29.99990 * 3 2 1 6 6 H 1.48494 * 109.47482 * 149.99649 * 3 2 1 7 7 C 1.39949 * 119.99385 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99842 * 197.85052 * 7 2 1 9 9 C 1.41389 * 120.00418 * 17.85408 * 7 2 1 10 10 C 1.40724 * 120.24068 * 24.38176 * 9 7 2 11 11 C 1.37614 * 119.74138 * 180.29934 * 10 9 7 12 12 C 1.38644 * 120.24958 * 359.46750 * 11 10 9 13 13 C 1.50701 * 119.74985 * 180.26190 * 12 11 10 14 14 N 1.46899 * 109.46918 * 270.25395 * 13 12 11 15 15 C 1.46845 * 111.00451 * 66.04338 * 14 13 12 16 16 C 1.53031 * 109.55934 * 174.18538 * 15 14 13 17 17 C 1.53128 * 109.26985 * 59.16628 * 16 15 14 18 18 C 1.53092 * 109.13391 * 302.36794 * 17 16 15 19 19 C 1.52981 * 109.44723 * 297.74818 * 18 17 16 20 20 C 1.53009 * 109.45100 * 300.00090 * 19 18 17 21 21 C 1.52991 * 109.46119 * 300.01950 * 20 19 18 22 22 C 1.52997 * 109.49869 * 59.99689 * 21 20 19 23 23 C 1.52965 * 109.46961 * 177.70401 * 18 17 16 24 24 C 1.46868 * 111.00009 * 301.83882 * 14 13 12 25 25 C 1.38627 * 120.50118 * 0.51164 * 12 11 10 26 26 C 1.37619 * 120.24541 * 359.77097 * 25 12 11 27 27 H 0.96998 * 119.99364 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.13014 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.87775 * 179.72611 * 11 10 9 30 30 H 1.09007 * 109.47230 * 30.24799 * 13 12 11 31 31 H 1.08993 * 109.47104 * 150.25328 * 13 12 11 32 32 H 1.08999 * 109.45592 * 294.21726 * 15 14 13 33 33 H 1.09007 * 109.45223 * 54.17990 * 15 14 13 34 34 H 1.09002 * 109.50404 * 179.10248 * 16 15 14 35 35 H 1.08998 * 109.50311 * 299.22640 * 16 15 14 36 36 H 1.09001 * 109.52513 * 62.26452 * 17 16 15 37 37 H 1.08998 * 109.52591 * 182.40205 * 17 16 15 38 38 H 1.08999 * 109.47403 * 59.99366 * 19 18 17 39 39 H 1.08997 * 109.47597 * 180.02562 * 19 18 17 40 40 H 1.09002 * 109.47350 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.47308 * 60.01825 * 20 19 18 42 42 H 1.08997 * 109.46937 * 299.98854 * 21 20 19 43 43 H 1.08997 * 109.46300 * 179.97438 * 21 20 19 44 44 H 1.08996 * 109.47712 * 180.02562 * 22 21 20 45 45 H 1.09004 * 109.47199 * 60.01133 * 22 21 20 46 46 H 1.09003 * 109.47128 * 179.97438 * 23 18 17 47 47 H 1.08989 * 109.47360 * 299.99939 * 23 18 17 48 48 H 1.09003 * 109.46079 * 305.81118 * 24 14 13 49 49 H 1.08996 * 109.46480 * 65.79259 * 24 14 13 50 50 H 1.08002 * 119.87772 * 179.74098 * 25 12 11 51 51 H 1.08008 * 120.12319 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4400 0.7001 7 6 2.0079 -1.2121 0.0005 8 1 3.0489 -1.2345 0.2873 9 6 1.3520 -2.4072 -0.3743 10 6 0.2206 -2.3626 -1.2100 11 6 -0.4136 -3.5317 -1.5634 12 6 0.0647 -4.7509 -1.1084 13 6 -0.6350 -6.0246 -1.5072 14 7 -1.6801 -6.3377 -0.5236 15 6 -2.7475 -5.3296 -0.5506 16 6 -3.8841 -5.7618 0.3784 17 6 -3.3414 -5.9194 1.8015 18 6 -2.1995 -6.9391 1.7930 19 6 -2.7350 -8.2998 1.3435 20 6 -3.8260 -8.7630 2.3111 21 6 -3.2403 -8.8845 3.7193 22 6 -2.7044 -7.5237 4.1686 23 6 -1.6136 -7.0602 3.2008 24 6 -1.1114 -6.4727 0.8238 25 6 1.1787 -4.8067 -0.2852 26 6 1.8253 -3.6499 0.0857 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1512 -1.4143 -1.5690 29 1 -1.2847 -3.4997 -2.2011 30 1 -1.0879 -5.8978 -2.4906 31 1 0.0872 -6.8402 -1.5422 32 1 -2.3501 -4.3711 -0.2167 33 1 -3.1277 -5.2307 -1.5675 34 1 -4.6687 -5.0052 0.3698 35 1 -4.2915 -6.7133 0.0367 36 1 -2.9695 -4.9589 2.1581 37 1 -4.1379 -6.2684 2.4586 38 1 -3.1522 -8.2127 0.3402 39 1 -1.9224 -9.0262 1.3377 40 1 -4.2075 -9.7327 1.9914 41 1 -4.6387 -8.0367 2.3170 42 1 -2.4277 -9.6109 3.7133 43 1 -4.0175 -9.2140 4.4087 44 1 -2.2868 -7.6108 5.1717 45 1 -3.5170 -6.7973 4.1750 46 1 -0.8008 -7.7865 3.1949 47 1 -1.2323 -6.0904 3.5203 48 1 -0.3034 -7.2042 0.8053 49 1 -0.7215 -5.5092 1.1516 50 1 1.5402 -5.7616 0.0668 51 1 2.6928 -3.6957 0.7275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657261645.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:01 Heat of formation + Delta-G solvation = -12.879968 kcal Electronic energy + Delta-G solvation = -27328.980207 eV Core-core repulsion = 23997.791115 eV Total energy + Delta-G solvation = -3331.189091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.27369 -38.01868 -36.30445 -33.92024 -32.58313 -31.33318 -30.52151 -29.81358 -29.24660 -26.76358 -25.82460 -24.42553 -22.66240 -22.41023 -21.74822 -20.76380 -20.26571 -19.39431 -17.82766 -17.30771 -15.92302 -15.36588 -15.16178 -14.59249 -14.38920 -14.34265 -14.00960 -13.94169 -13.87308 -13.48045 -13.34072 -12.82794 -12.54229 -12.28747 -12.10150 -12.03168 -11.92570 -11.68337 -11.50329 -11.41183 -11.24516 -11.05423 -10.96969 -10.88006 -10.76379 -10.63937 -10.51396 -10.34041 -10.23089 -9.84988 -9.73468 -9.69005 -9.56564 -9.40830 -9.14932 -7.70651 -7.46335 -7.30831 -6.79183 -4.37762 2.72448 3.03368 3.05414 3.08133 3.16764 3.90435 4.42365 4.63525 4.71588 4.86122 4.88649 5.14620 5.24533 5.31305 5.39722 5.49590 5.56457 5.65551 5.66934 5.71118 5.72934 5.81539 5.84378 5.90624 5.98825 6.05487 6.08119 6.13761 6.18394 6.19844 6.24834 6.28467 6.29712 6.35326 6.36931 6.39597 6.43595 6.48930 6.52686 6.60906 6.71916 6.80653 6.92207 7.04521 7.24990 7.33530 7.56788 7.62735 7.64993 7.85095 8.03025 8.11309 8.27849 8.61795 8.87077 8.95278 10.15174 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.019315 B = 0.003458 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.271386 B = 8095.394538 C = 8436.227736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.167 4.167 11 C -0.089 4.089 12 C -0.247 4.247 13 C 0.114 3.886 14 N -0.528 5.528 15 C 0.053 3.947 16 C -0.115 4.115 17 C -0.111 4.111 18 C -0.049 4.049 19 C -0.098 4.098 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.110 4.110 24 C 0.067 3.933 25 C -0.078 4.078 26 C -0.228 4.228 27 H 0.280 0.720 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.049 0.951 50 H 0.083 0.917 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.480 -11.930 3.703 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.186 4.186 11 C -0.108 4.108 12 C -0.250 4.250 13 C -0.013 4.013 14 N -0.251 5.251 15 C -0.075 4.075 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.050 4.050 19 C -0.136 4.136 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.148 4.148 24 C -0.061 4.061 25 C -0.097 4.097 26 C -0.248 4.248 27 H 0.091 0.909 28 H 0.134 0.866 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.102 0.898 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.906 -12.235 3.582 15.001 hybrid contribution 0.793 1.716 0.316 1.916 sum -7.112 -10.519 3.899 13.283 Atomic orbital electron populations 1.69830 1.07575 1.29162 1.35194 1.25902 0.94708 1.01279 0.92214 0.86332 0.80531 0.80650 0.79338 1.19264 1.20309 1.18623 1.19611 0.98146 0.91360 1.40234 0.90534 1.17606 0.91076 0.91953 0.88315 1.21305 0.99348 0.96749 1.01207 1.20522 0.98047 0.92805 0.99428 1.19670 1.01551 0.94504 1.09267 1.20820 0.92024 0.94194 0.94276 1.62433 1.11195 1.45594 1.05867 1.22035 0.91999 0.94569 0.98906 1.21609 0.97395 1.01140 0.95175 1.21699 0.97631 0.98730 0.96791 1.20502 0.95224 0.95301 0.93924 1.21484 0.97551 0.95323 0.99224 1.21616 0.98724 1.00547 0.95092 1.21516 0.99935 0.97327 0.96696 1.21543 0.98770 0.97016 0.98272 1.21553 0.97614 1.01223 0.94368 1.22043 0.95293 1.00377 0.88377 1.20354 0.95397 0.96165 0.97766 1.20959 1.03747 0.93036 1.07069 0.90915 0.86645 0.89857 0.91899 0.91903 0.93427 0.91891 0.92373 0.91567 0.92343 0.91892 0.90518 0.92812 0.92746 0.91965 0.92356 0.92770 0.92550 0.91869 0.92184 0.91995 0.91934 0.93311 0.89836 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.42 10.95 55.55 0.61 -19.81 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.33 9.05 -37.74 -0.34 -12.67 16 8 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 9 C 0.11 3.00 5.58 -106.83 -0.60 2.40 16 10 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 11 C -0.09 -2.02 8.06 -39.66 -0.32 -2.34 16 12 C -0.25 -5.17 4.07 -104.33 -0.42 -5.60 16 13 C 0.11 1.98 5.55 -4.98 -0.03 1.95 16 14 N -0.53 -8.48 4.14 -236.12 -0.98 -9.45 16 15 C 0.05 0.85 4.80 -3.84 -0.02 0.83 16 16 C -0.12 -1.56 5.74 -26.65 -0.15 -1.71 16 17 C -0.11 -1.49 4.08 -26.62 -0.11 -1.60 16 18 C -0.05 -0.65 0.51 -154.49 -0.08 -0.73 16 19 C -0.10 -1.18 4.29 -26.74 -0.11 -1.29 16 20 C -0.12 -1.26 5.65 -26.73 -0.15 -1.41 16 21 C -0.12 -1.15 5.92 -26.74 -0.16 -1.30 16 22 C -0.12 -1.26 5.65 -26.72 -0.15 -1.41 16 23 C -0.11 -1.36 4.74 -26.74 -0.13 -1.49 16 24 C 0.07 1.07 3.25 -3.84 -0.01 1.06 16 25 C -0.08 -1.70 7.97 -39.66 -0.32 -2.02 16 26 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 27 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 28 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 29 H 0.08 1.75 8.01 -52.49 -0.42 1.33 16 30 H 0.06 1.06 8.00 -51.92 -0.42 0.64 16 31 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.05 0.92 6.53 -51.93 -0.34 0.58 16 33 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.85 6.57 -51.93 -0.34 0.50 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.76 4.83 -51.93 -0.25 0.50 16 38 H 0.08 1.00 6.00 -51.93 -0.31 0.68 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.65 6.38 -51.93 -0.33 0.32 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.68 6.48 -51.93 -0.34 0.34 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.84 8.14 -51.94 -0.42 0.42 16 48 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 49 H 0.05 0.94 6.46 -51.93 -0.34 0.60 16 50 H 0.08 1.65 8.01 -52.49 -0.42 1.23 16 51 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -25.82 369.79 -12.60 -38.42 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -8.86 Total: 7.70 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: -3.91 Total: -36.07 kcal Atomic # 7 Polarization: -28.90 SS G_CDS: -0.37 Total: -29.27 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -25.82 -12.60 -38.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657261645.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.540 kcal (2) G-P(sol) polarization free energy of solvation -25.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds