Wall clock time and date at job start Tue Mar 31 2020 10:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86795 * 120.00506 * 2 1 4 4 H 1.48501 * 109.47265 * 270.00225 * 3 2 1 5 5 H 1.48506 * 109.46680 * 29.99990 * 3 2 1 6 6 H 1.48494 * 109.47482 * 149.99649 * 3 2 1 7 7 C 1.39949 * 119.99385 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99842 * 197.85052 * 7 2 1 9 9 C 1.41389 * 120.00418 * 17.85408 * 7 2 1 10 10 C 1.40724 * 120.24068 * 24.38176 * 9 7 2 11 11 C 1.37614 * 119.74138 * 180.29934 * 10 9 7 12 12 C 1.38644 * 120.24958 * 359.46750 * 11 10 9 13 13 C 1.50701 * 119.74985 * 180.26190 * 12 11 10 14 14 N 1.46899 * 109.46918 * 270.25395 * 13 12 11 15 15 C 1.46845 * 111.00451 * 66.04338 * 14 13 12 16 16 C 1.53031 * 109.55934 * 174.18538 * 15 14 13 17 17 C 1.53128 * 109.26985 * 59.16628 * 16 15 14 18 18 C 1.53092 * 109.13391 * 302.36794 * 17 16 15 19 19 C 1.52981 * 109.44723 * 297.74818 * 18 17 16 20 20 C 1.53009 * 109.45100 * 300.00090 * 19 18 17 21 21 C 1.52991 * 109.46119 * 300.01950 * 20 19 18 22 22 C 1.52997 * 109.49869 * 59.99689 * 21 20 19 23 23 C 1.52965 * 109.46961 * 177.70401 * 18 17 16 24 24 C 1.46868 * 111.00009 * 301.83882 * 14 13 12 25 25 C 1.38627 * 120.50118 * 0.51164 * 12 11 10 26 26 C 1.37619 * 120.24541 * 359.77097 * 25 12 11 27 27 H 0.96998 * 119.99364 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.13014 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.87775 * 179.72611 * 11 10 9 30 30 H 1.09007 * 109.47230 * 30.24799 * 13 12 11 31 31 H 1.08993 * 109.47104 * 150.25328 * 13 12 11 32 32 H 1.08999 * 109.45592 * 294.21726 * 15 14 13 33 33 H 1.09007 * 109.45223 * 54.17990 * 15 14 13 34 34 H 1.09002 * 109.50404 * 179.10248 * 16 15 14 35 35 H 1.08998 * 109.50311 * 299.22640 * 16 15 14 36 36 H 1.09001 * 109.52513 * 62.26452 * 17 16 15 37 37 H 1.08998 * 109.52591 * 182.40205 * 17 16 15 38 38 H 1.08999 * 109.47403 * 59.99366 * 19 18 17 39 39 H 1.08997 * 109.47597 * 180.02562 * 19 18 17 40 40 H 1.09002 * 109.47350 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.47308 * 60.01825 * 20 19 18 42 42 H 1.08997 * 109.46937 * 299.98854 * 21 20 19 43 43 H 1.08997 * 109.46300 * 179.97438 * 21 20 19 44 44 H 1.08996 * 109.47712 * 180.02562 * 22 21 20 45 45 H 1.09004 * 109.47199 * 60.01133 * 22 21 20 46 46 H 1.09003 * 109.47128 * 179.97438 * 23 18 17 47 47 H 1.08989 * 109.47360 * 299.99939 * 23 18 17 48 48 H 1.09003 * 109.46079 * 305.81118 * 24 14 13 49 49 H 1.08996 * 109.46480 * 65.79259 * 24 14 13 50 50 H 1.08002 * 119.87772 * 179.74098 * 25 12 11 51 51 H 1.08008 * 120.12319 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4400 0.7001 7 6 2.0079 -1.2121 0.0005 8 1 3.0489 -1.2345 0.2873 9 6 1.3520 -2.4072 -0.3743 10 6 0.2206 -2.3626 -1.2100 11 6 -0.4136 -3.5317 -1.5634 12 6 0.0647 -4.7509 -1.1084 13 6 -0.6350 -6.0246 -1.5072 14 7 -1.6801 -6.3377 -0.5236 15 6 -2.7475 -5.3296 -0.5506 16 6 -3.8841 -5.7618 0.3784 17 6 -3.3414 -5.9194 1.8015 18 6 -2.1995 -6.9391 1.7930 19 6 -2.7350 -8.2998 1.3435 20 6 -3.8260 -8.7630 2.3111 21 6 -3.2403 -8.8845 3.7193 22 6 -2.7044 -7.5237 4.1686 23 6 -1.6136 -7.0602 3.2008 24 6 -1.1114 -6.4727 0.8238 25 6 1.1787 -4.8067 -0.2852 26 6 1.8253 -3.6499 0.0857 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1512 -1.4143 -1.5690 29 1 -1.2847 -3.4997 -2.2011 30 1 -1.0879 -5.8978 -2.4906 31 1 0.0872 -6.8402 -1.5422 32 1 -2.3501 -4.3711 -0.2167 33 1 -3.1277 -5.2307 -1.5675 34 1 -4.6687 -5.0052 0.3698 35 1 -4.2915 -6.7133 0.0367 36 1 -2.9695 -4.9589 2.1581 37 1 -4.1379 -6.2684 2.4586 38 1 -3.1522 -8.2127 0.3402 39 1 -1.9224 -9.0262 1.3377 40 1 -4.2075 -9.7327 1.9914 41 1 -4.6387 -8.0367 2.3170 42 1 -2.4277 -9.6109 3.7133 43 1 -4.0175 -9.2140 4.4087 44 1 -2.2868 -7.6108 5.1717 45 1 -3.5170 -6.7973 4.1750 46 1 -0.8008 -7.7865 3.1949 47 1 -1.2323 -6.0904 3.5203 48 1 -0.3034 -7.2042 0.8053 49 1 -0.7215 -5.5092 1.1516 50 1 1.5402 -5.7616 0.0668 51 1 2.6928 -3.6957 0.7275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657261645.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:00 Heat of formation + Delta-G solvation = -23.010085 kcal Electronic energy + Delta-G solvation = -27329.419481 eV Core-core repulsion = 23997.791115 eV Total energy + Delta-G solvation = -3331.628366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43965 -39.64748 -37.69782 -35.63959 -33.98049 -32.42664 -31.61117 -31.43306 -31.08150 -28.40660 -26.93547 -26.06350 -23.81300 -23.62208 -23.10184 -22.32488 -21.82523 -20.70944 -19.26820 -18.87472 -17.24198 -17.03993 -16.51869 -16.00865 -15.76841 -15.52080 -15.42328 -15.25360 -15.11778 -14.88278 -14.72527 -14.30106 -13.90951 -13.79005 -13.49343 -13.43816 -13.14028 -12.97608 -12.89979 -12.76176 -12.73283 -12.56702 -12.38984 -12.22388 -12.09015 -11.85115 -11.75257 -11.68779 -11.56153 -11.29724 -11.24873 -11.04209 -10.82215 -10.72550 -10.61945 -9.38224 -9.26551 -9.08620 -8.67345 -6.36909 0.92127 1.11375 1.33909 1.47163 1.48125 2.17095 2.66732 3.18205 3.68655 3.73445 3.85873 3.90965 4.12340 4.22745 4.23700 4.31049 4.35976 4.44960 4.49667 4.52702 4.56206 4.64426 4.67925 4.72248 4.73849 4.77695 4.89915 4.92847 4.97248 5.01128 5.03408 5.04338 5.09604 5.11951 5.14738 5.23909 5.28694 5.30817 5.34167 5.35803 5.42326 5.43927 5.47289 5.55737 5.66948 5.71255 5.76858 5.93545 6.06857 6.13618 6.25313 6.35462 6.36834 6.67697 6.91170 7.01064 8.29393 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.019315 B = 0.003458 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.271386 B = 8095.394538 C = 8436.227736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.072 0.928 9 C 0.082 3.918 10 C -0.191 4.191 11 C -0.090 4.090 12 C -0.230 4.230 13 C 0.115 3.885 14 N -0.513 5.513 15 C 0.054 3.946 16 C -0.110 4.110 17 C -0.109 4.109 18 C -0.045 4.045 19 C -0.092 4.092 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.110 4.110 24 C 0.071 3.929 25 C -0.076 4.076 26 C -0.247 4.247 27 H 0.287 0.713 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.029 0.971 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.040 0.960 48 H 0.066 0.934 49 H 0.008 0.992 50 H 0.109 0.891 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.766 -14.051 3.862 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.079 3.921 10 C -0.211 4.211 11 C -0.109 4.109 12 C -0.232 4.232 13 C -0.012 4.012 14 N -0.235 5.235 15 C -0.074 4.074 16 C -0.147 4.147 17 C -0.146 4.146 18 C -0.045 4.045 19 C -0.129 4.129 20 C -0.156 4.156 21 C -0.152 4.152 22 C -0.153 4.153 23 C -0.148 4.148 24 C -0.058 4.058 25 C -0.095 4.095 26 C -0.266 4.266 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.026 0.974 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.048 0.952 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.058 0.942 48 H 0.085 0.915 49 H 0.027 0.973 50 H 0.127 0.873 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.199 -14.376 3.743 17.473 hybrid contribution 1.151 2.242 0.264 2.535 sum -8.048 -12.133 4.007 15.101 Atomic orbital electron populations 1.69887 1.09002 1.30440 1.35814 1.26744 0.95477 1.04467 0.91169 0.85220 0.79077 0.75944 0.79567 1.18614 1.19111 1.18277 1.19839 0.98286 0.92765 1.42547 0.91011 1.17926 0.91958 0.92952 0.89239 1.21255 1.00266 0.97073 1.02496 1.20733 0.98141 0.92662 0.99317 1.20100 1.00510 0.95575 1.07043 1.20916 0.92552 0.92543 0.95202 1.62504 1.10501 1.44818 1.05679 1.22062 0.92691 0.92722 0.99975 1.21589 0.96509 1.02215 0.94400 1.21684 0.98247 0.97482 0.97183 1.20469 0.94241 0.96174 0.93623 1.21410 0.98124 0.94012 0.99364 1.21595 0.97960 1.01277 0.94787 1.21505 1.00454 0.96487 0.96719 1.21526 0.97972 0.97682 0.98121 1.21544 0.98493 1.00276 0.94450 1.22039 0.96513 0.98413 0.88788 1.20628 0.95222 0.96386 0.97224 1.21149 1.04373 0.93487 1.07635 0.90226 0.88562 0.88236 0.90575 0.90258 0.97402 0.91009 0.91503 0.89764 0.95181 0.89845 0.91105 0.92757 0.91289 0.91825 0.92077 0.91193 0.91730 0.92036 0.91868 0.94154 0.91527 0.97332 0.87293 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.41 10.95 21.83 0.24 -44.17 16 2 C 0.04 1.88 5.14 85.26 0.44 2.32 16 3 Si 0.98 39.28 29.59 68.60 2.03 41.31 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 7 C -0.50 -28.24 9.05 23.46 0.21 -28.03 16 8 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 9 C 0.08 4.55 5.58 -21.29 -0.12 4.43 16 10 C -0.19 -10.33 8.70 22.73 0.20 -10.14 16 11 C -0.09 -4.17 8.06 22.22 0.18 -3.99 16 12 C -0.23 -9.58 4.07 -19.67 -0.08 -9.66 16 13 C 0.12 3.80 5.55 85.56 0.47 4.27 16 14 N -0.51 -15.69 4.14 -900.95 -3.73 -19.42 16 15 C 0.05 1.68 4.80 86.32 0.41 2.10 16 16 C -0.11 -2.78 5.74 30.65 0.18 -2.60 16 17 C -0.11 -2.81 4.08 30.67 0.13 -2.68 16 18 C -0.04 -1.12 0.51 -52.17 -0.03 -1.15 16 19 C -0.09 -1.94 4.29 30.59 0.13 -1.81 16 20 C -0.12 -2.02 5.65 30.59 0.17 -1.84 16 21 C -0.11 -1.85 5.92 30.59 0.18 -1.67 16 22 C -0.12 -2.21 5.65 30.60 0.17 -2.04 16 23 C -0.11 -2.63 4.74 30.59 0.14 -2.48 16 24 C 0.07 2.20 3.25 86.31 0.28 2.49 16 25 C -0.08 -3.34 7.97 22.22 0.18 -3.16 16 26 C -0.25 -12.53 9.80 22.73 0.22 -12.31 16 27 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 28 H 0.10 5.48 6.16 -2.91 -0.02 5.47 16 29 H 0.10 4.21 8.01 -2.91 -0.02 4.19 16 30 H 0.08 2.36 8.00 -2.38 -0.02 2.34 16 31 H 0.08 2.41 8.08 -2.39 -0.02 2.39 16 32 H 0.01 0.30 6.53 -2.39 -0.02 0.29 16 33 H 0.07 2.11 8.06 -2.38 -0.02 2.09 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 1.88 6.57 -2.39 -0.02 1.87 16 36 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 1.82 4.83 -2.39 -0.01 1.81 16 38 H 0.07 1.60 6.00 -2.39 -0.01 1.59 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.08 6.38 -2.39 -0.02 1.07 16 42 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.06 1.20 6.48 -2.39 -0.02 1.19 16 46 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 49 H 0.01 0.33 6.46 -2.39 -0.02 0.32 16 50 H 0.11 4.19 8.01 -2.91 -0.02 4.17 16 51 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -58.93 369.79 2.90 -56.03 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.89 Total: 34.21 kcal Atomic # 6 Polarization: -71.44 SS G_CDS: 3.48 Total: -67.96 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -3.49 Total: -63.58 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -58.93 2.90 -56.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657261645.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.018 kcal (2) G-P(sol) polarization free energy of solvation -58.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds