Wall clock time and date at job start Tue Mar 31 2020 11:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47139 * 2 1 4 4 O 1.42901 * 109.47091 * 119.99601 * 2 1 3 5 5 C 1.42905 * 113.99785 * 150.00051 * 4 2 1 6 6 C 1.50703 * 109.46915 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99926 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99773 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99531 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46883 * 179.97438 * 9 8 6 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 8 12 12 C 1.46839 * 111.00175 * 45.79285 * 11 10 9 13 13 C 1.53038 * 109.52321 * 185.83828 * 12 11 10 14 14 C 1.53111 * 109.28032 * 300.82001 * 13 12 11 15 15 N 1.46502 * 109.57610 * 177.59088 * 14 13 12 16 16 C 1.36938 * 119.99887 * 85.28770 * 15 14 13 17 17 H 1.07997 * 119.99863 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99835 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99709 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99887 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47267 * 89.99967 * 20 18 16 22 22 H 1.48505 * 109.46763 * 209.99802 * 20 18 16 23 23 H 1.48499 * 109.46926 * 329.99431 * 20 18 16 24 24 C 1.53117 * 109.16032 * 57.65459 * 14 13 12 25 25 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 26 26 H 1.08994 * 109.47290 * 299.99890 * 1 2 3 27 27 H 1.09004 * 109.47079 * 60.00307 * 1 2 3 28 28 H 1.09005 * 109.47028 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47670 * 239.99933 * 2 1 3 30 30 H 1.09000 * 109.46427 * 299.99917 * 3 2 1 31 31 H 1.09001 * 109.46895 * 59.99458 * 3 2 1 32 32 H 1.08995 * 109.47261 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46619 * 60.00544 * 5 4 2 34 34 H 1.08993 * 109.47057 * 299.99974 * 5 4 2 35 35 H 0.96992 * 120.00503 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.46891 * 60.00097 * 9 8 6 37 37 H 1.08993 * 109.47378 * 299.99469 * 9 8 6 38 38 H 1.09001 * 109.46801 * 300.00349 * 10 9 8 39 39 H 1.09001 * 109.46998 * 59.99945 * 10 9 8 40 40 H 1.09000 * 109.46389 * 305.85096 * 12 11 10 41 41 H 1.08998 * 109.46466 * 65.81826 * 12 11 10 42 42 H 1.09001 * 109.50415 * 180.87699 * 13 12 11 43 43 H 1.09005 * 109.50244 * 60.76180 * 13 12 11 44 44 H 1.09006 * 109.52471 * 297.75264 * 14 13 12 45 45 H 0.97001 * 119.99798 * 265.28408 * 15 14 13 46 46 H 0.97002 * 119.99484 * 180.02562 * 19 18 16 47 47 H 1.09006 * 109.50431 * 182.40729 * 24 14 13 48 48 H 1.08996 * 109.50401 * 62.28603 * 24 14 13 49 49 H 1.08992 * 109.46356 * 294.17825 * 25 11 10 50 50 H 1.09007 * 109.46137 * 54.15905 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9887 6 6 3.6693 -1.9987 2.2747 7 8 2.9492 -1.9284 3.2480 8 7 4.8308 -2.6790 2.3434 9 6 5.2230 -3.3340 3.5937 10 6 6.5717 -4.0310 3.4030 11 7 6.9648 -4.6883 4.6565 12 6 5.8391 -5.4319 5.2363 13 6 6.2405 -5.9802 6.6075 14 6 7.4554 -6.8985 6.4490 15 7 7.8806 -7.3817 7.7650 16 6 7.2886 -8.4888 8.3119 17 1 6.5081 -9.0054 7.7733 18 6 7.6919 -8.9470 9.5587 19 7 7.1225 -10.0108 10.0846 20 14 9.0415 -8.0529 10.4906 21 1 8.4380 -7.0012 11.3479 22 1 9.7807 -9.0206 11.3407 23 1 9.9788 -7.4263 9.5242 24 6 8.5976 -6.1130 5.7988 25 6 8.1279 -5.5608 4.4509 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 4.0199 -0.5872 0.7126 34 1 3.1809 -2.0706 0.1988 35 1 5.4069 -2.7349 1.5651 36 1 4.4692 -4.0714 3.8696 37 1 5.3078 -2.5879 4.3837 38 1 6.4865 -4.7772 2.6130 39 1 7.3257 -3.2939 3.1268 40 1 4.9831 -4.7664 5.3478 41 1 5.5727 -6.2589 4.5782 42 1 5.4100 -6.5453 7.0308 43 1 6.4938 -5.1528 7.2705 44 1 7.1910 -7.7467 5.8174 45 1 8.5815 -6.9175 8.2489 46 1 7.4041 -10.3307 10.9560 47 1 9.4513 -6.7729 5.6441 48 1 8.8879 -5.2877 6.4489 49 1 7.8509 -6.3872 3.7965 50 1 8.9345 -4.9888 3.9920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754847092.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:12 Heat of formation + Delta-G solvation = -95.728151 kcal Electronic energy + Delta-G solvation = -25852.548996 eV Core-core repulsion = 22106.918075 eV Total energy + Delta-G solvation = -3745.630921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.97559 -40.15399 -38.99663 -37.21933 -35.78035 -34.10715 -33.70047 -32.19024 -31.76175 -30.02635 -28.21755 -27.75876 -25.86146 -24.60729 -23.34035 -22.27570 -22.18501 -21.74346 -20.93525 -19.52139 -18.24481 -18.09172 -17.36985 -17.13475 -16.72052 -16.29217 -16.22985 -15.86579 -15.64575 -15.35669 -15.30594 -14.90925 -14.69416 -14.55712 -14.30161 -14.18275 -13.86357 -13.50341 -13.39437 -13.07797 -13.06081 -12.94326 -12.89912 -12.71347 -12.52078 -12.34670 -12.28230 -12.07642 -11.86429 -11.81036 -11.65597 -11.62670 -11.21342 -10.93555 -10.89148 -10.64073 -10.16105 -9.32299 -9.24886 -8.02535 -5.35534 1.37573 1.41514 1.48626 1.54496 1.74715 2.48689 2.84801 3.15261 3.28679 3.55458 3.71490 3.78565 3.98311 4.02755 4.04709 4.10952 4.16678 4.21274 4.27733 4.29505 4.33871 4.35133 4.49162 4.53521 4.67519 4.73538 4.75538 4.81698 4.85406 4.91281 4.92141 4.94243 4.94640 4.97694 5.09668 5.17542 5.29673 5.33729 5.34903 5.39726 5.53652 5.76265 6.07787 6.15189 6.17432 6.22138 6.54604 7.08203 7.21864 7.85129 8.04750 9.19173 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.031590 B = 0.001878 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.152444 B =14902.283283 C =15340.368944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.073 3.927 3 C -0.175 4.175 4 O -0.398 6.398 5 C 0.047 3.953 6 C 0.505 3.495 7 O -0.580 6.580 8 N -0.710 5.710 9 C 0.119 3.881 10 C 0.055 3.945 11 N -0.542 5.542 12 C 0.061 3.939 13 C -0.126 4.126 14 C 0.174 3.826 15 N -0.752 5.752 16 C -0.229 4.229 17 H 0.053 0.947 18 C -0.067 4.067 19 N -0.986 5.986 20 Si 0.958 3.042 21 H -0.282 1.282 22 H -0.295 1.295 23 H -0.249 1.249 24 C -0.117 4.117 25 C 0.070 3.930 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.421 0.579 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.033 0.967 42 H 0.039 0.961 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.365 0.635 46 H 0.257 0.743 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.039 0.961 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 23.401 -29.638 37.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 C -0.232 4.232 4 O -0.317 6.317 5 C -0.032 4.032 6 C 0.292 3.708 7 O -0.458 6.458 8 N -0.365 5.365 9 C -0.005 4.005 10 C -0.073 4.073 11 N -0.268 5.268 12 C -0.068 4.068 13 C -0.166 4.166 14 C 0.066 3.934 15 N -0.394 5.394 16 C -0.360 4.360 17 H 0.071 0.929 18 C -0.258 4.258 19 N -0.636 5.636 20 Si 0.785 3.215 21 H -0.208 1.208 22 H -0.222 1.222 23 H -0.173 1.173 24 C -0.155 4.155 25 C -0.058 4.058 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.259 0.741 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.198 0.802 46 H 0.066 0.934 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.057 0.943 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.421 23.623 -28.442 37.131 hybrid contribution 0.412 -0.836 0.459 1.038 sum -3.010 22.787 -27.983 36.212 Atomic orbital electron populations 1.21907 0.93473 1.02577 1.02986 1.22407 0.95391 0.93005 0.87599 1.22311 1.01896 0.96100 1.02886 1.88051 1.35806 1.70417 1.37459 1.22376 0.88365 0.98386 0.94076 1.21025 0.80878 0.78504 0.90388 1.90745 1.53567 1.61523 1.39991 1.45610 1.21869 1.53551 1.15473 1.21365 0.96259 0.96434 0.86430 1.22232 0.95656 0.98597 0.90787 1.61940 1.06190 1.32337 1.26338 1.22091 0.93688 0.96126 0.94856 1.22095 0.98901 0.98898 0.96713 1.20476 0.93729 0.93956 0.85263 1.42803 1.44712 1.32261 1.19660 1.19026 1.14263 1.02720 1.00023 0.92932 1.25526 1.02704 0.98875 0.98682 1.69896 1.47215 1.27626 1.18893 0.85367 0.79710 0.77719 0.78721 1.20821 1.22222 1.17329 1.21806 0.97389 0.99267 0.97043 1.22027 0.93160 0.94953 0.95647 0.93245 0.88811 0.92589 0.89497 0.89608 0.93370 0.91793 0.87213 0.87093 0.74095 0.92725 0.92260 0.92539 0.87616 0.90291 0.94867 0.94255 0.92465 0.94719 0.80160 0.93422 0.90950 0.91372 0.94277 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.56 71.98 0.69 -0.99 16 2 C 0.07 0.79 3.34 30.60 0.10 0.90 16 3 C -0.17 -1.53 9.53 71.98 0.69 -0.85 16 4 O -0.40 -7.50 9.52 -129.94 -1.24 -8.73 16 5 C 0.05 0.55 6.23 71.24 0.44 0.99 16 6 C 0.51 10.09 7.91 87.66 0.69 10.79 16 7 O -0.58 -19.02 16.50 16.01 0.26 -18.76 16 8 N -0.71 -9.56 5.56 -463.05 -2.57 -12.13 16 9 C 0.12 2.22 4.93 86.38 0.43 2.64 16 10 C 0.05 0.81 5.39 86.31 0.46 1.27 16 11 N -0.54 -12.01 4.81 -896.35 -4.31 -16.31 16 12 C 0.06 1.67 4.85 86.33 0.42 2.09 16 13 C -0.13 -4.52 5.68 30.64 0.17 -4.34 16 14 C 0.17 6.63 2.84 45.07 0.13 6.76 16 15 N -0.75 -35.81 4.93 -322.57 -1.59 -37.40 16 16 C -0.23 -13.39 10.42 84.03 0.88 -12.52 16 17 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 19 N -0.99 -64.56 13.97 21.65 0.30 -64.25 16 20 Si 0.96 46.53 27.74 68.60 1.90 48.43 16 21 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 23 H -0.25 -10.81 6.52 99.48 0.65 -10.16 16 24 C -0.12 -3.34 5.57 30.65 0.17 -3.17 16 25 C 0.07 1.48 5.42 86.33 0.47 1.95 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.09 0.48 7.79 -2.39 -0.02 0.47 16 30 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.46 7.87 -2.39 -0.02 0.44 16 33 H 0.11 0.58 7.87 -2.39 -0.02 0.56 16 34 H 0.11 0.57 8.08 -2.39 -0.02 0.55 16 35 H 0.42 1.93 8.47 -92.71 -0.79 1.15 16 36 H 0.05 1.26 6.21 -2.39 -0.01 1.25 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.06 0.68 8.08 -2.39 -0.02 0.66 16 39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 2.14 5.81 -2.39 -0.01 2.12 16 41 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 44 H 0.03 1.42 8.08 -2.38 -0.02 1.41 16 45 H 0.37 16.67 5.66 -92.71 -0.52 16.15 16 46 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 47 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 48 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.10 1.61 8.12 -2.38 -0.02 1.59 16 Total: -1.00 -82.88 395.16 -1.49 -84.37 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -0.46 Total: 22.82 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 6.20 Total: 1.97 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -8.17 Total: -130.10 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.97 Total: -27.49 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.43 kcal Total: -82.88 -1.49 -84.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754847092.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.360 kcal (2) G-P(sol) polarization free energy of solvation -82.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds