Wall clock time and date at job start Tue Mar 31 2020 11:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.46932 * 2 1 4 4 C 1.47009 * 111.00300 * 288.16639 * 3 2 1 5 5 C 1.53098 * 109.26195 * 177.60987 * 4 3 2 6 6 O 1.43010 * 109.25753 * 56.84792 * 5 4 3 7 7 C 1.43018 * 113.74179 * 301.33361 * 6 5 4 8 8 C 1.47013 * 110.99848 * 164.53187 * 3 2 1 9 9 H 1.08999 * 109.54567 * 62.43989 * 8 3 2 10 10 C 1.50700 * 109.50919 * 302.32800 * 8 3 2 11 11 O 1.21282 * 120.00028 * 331.88651 * 10 8 3 12 12 N 1.34771 * 120.00463 * 151.61491 * 10 8 3 13 13 C 1.46499 * 120.00428 * 180.27343 * 12 10 8 14 14 H 1.09001 * 109.47008 * 35.00166 * 13 12 10 15 15 C 1.52998 * 109.47397 * 274.99705 * 13 12 10 16 16 C 1.52999 * 109.47238 * 154.99726 * 13 12 10 17 17 C 1.53004 * 109.47340 * 295.00281 * 16 13 12 18 18 C 1.53003 * 109.47360 * 179.97438 * 17 16 13 19 19 N 1.46493 * 109.47202 * 179.97438 * 18 17 16 20 20 C 1.36935 * 120.00130 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99760 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00299 * 180.02562 * 20 19 18 23 23 N 1.31617 * 120.00308 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99923 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47066 * 89.99850 * 24 22 20 26 26 H 1.48493 * 109.47327 * 210.00268 * 24 22 20 27 27 H 1.48503 * 109.46958 * 329.99962 * 24 22 20 28 28 H 1.08996 * 109.47510 * 59.99957 * 1 2 3 29 29 H 1.09001 * 109.46863 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47370 * 299.99704 * 1 2 3 31 31 H 1.08997 * 109.47161 * 240.00051 * 2 1 3 32 32 H 1.09001 * 109.47069 * 119.99863 * 2 1 3 33 33 H 1.08999 * 109.50723 * 57.67405 * 4 3 2 34 34 H 1.08999 * 109.54441 * 297.56570 * 4 3 2 35 35 H 1.09006 * 109.50230 * 296.91269 * 5 4 3 36 36 H 1.08995 * 109.54281 * 176.80933 * 5 4 3 37 37 H 1.09003 * 109.50514 * 298.73598 * 7 6 5 38 38 H 1.08995 * 109.54250 * 178.62806 * 7 6 5 39 39 H 0.97006 * 119.99641 * 0.27705 * 12 10 8 40 40 H 1.08996 * 109.46994 * 300.00079 * 15 13 12 41 41 H 1.09006 * 109.46863 * 59.99893 * 15 13 12 42 42 H 1.08997 * 109.47066 * 179.97438 * 15 13 12 43 43 H 1.09007 * 109.47265 * 55.00122 * 16 13 12 44 44 H 1.09001 * 109.47243 * 175.00113 * 16 13 12 45 45 H 1.08998 * 109.47083 * 300.00168 * 17 16 13 46 46 H 1.09001 * 109.47089 * 59.99739 * 17 16 13 47 47 H 1.08998 * 109.47448 * 300.00298 * 18 17 16 48 48 H 1.09007 * 109.46580 * 60.00226 * 18 17 16 49 49 H 0.97006 * 119.99898 * 0.02562 * 19 18 17 50 50 H 0.97001 * 120.00192 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7918 2.0244 -1.3040 5 6 2.2610 3.4803 -1.2415 6 8 3.6371 3.5162 -0.8539 7 6 3.8951 2.9026 0.4119 8 6 3.4424 1.4408 0.3660 9 1 4.0311 0.9006 -0.3754 10 6 3.6386 0.8105 1.7208 11 8 2.7365 0.8221 2.5314 12 7 4.8145 0.2291 2.0297 13 6 5.0032 -0.3888 3.3445 14 1 4.0667 -0.8408 3.6713 15 6 5.4337 0.6785 4.3527 16 6 6.0844 -1.4673 3.2507 17 6 5.6008 -2.5964 2.3384 18 6 6.6823 -3.6746 2.2441 19 7 6.2190 -4.7559 1.3711 20 6 7.0239 -5.8385 1.1359 21 1 8.0002 -5.8952 1.5943 22 6 6.5851 -6.8629 0.3082 23 7 7.3586 -7.9036 0.0825 24 14 4.8969 -6.7643 -0.4853 25 1 5.0071 -6.0841 -1.8007 26 1 4.3608 -8.1353 -0.6803 27 1 3.9806 -5.9951 0.3945 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.7288 1.9945 -1.5433 34 1 2.3530 1.4939 -2.0732 35 1 1.6627 4.0244 -0.5105 36 1 2.1467 3.9427 -2.2218 37 1 3.3443 3.4298 1.1909 38 1 4.9626 2.9465 0.6276 39 1 5.5361 0.2199 1.3814 40 1 6.3702 1.1303 4.0258 41 1 4.6634 1.4468 4.4195 42 1 5.5736 0.2187 5.3310 43 1 6.9959 -1.0333 2.8397 44 1 6.2878 -1.8653 4.2449 45 1 4.6893 -3.0304 2.7494 46 1 5.3974 -2.1984 1.3443 47 1 7.5935 -3.2403 1.8329 48 1 6.8860 -4.0727 3.2382 49 1 5.3420 -4.7051 0.9597 50 1 7.0521 -8.6193 -0.4962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755505430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:30 Heat of formation + Delta-G solvation = -70.708361 kcal Electronic energy + Delta-G solvation = -27301.854239 eV Core-core repulsion = 23557.308257 eV Total energy + Delta-G solvation = -3744.545982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.86780 -39.14890 -37.01699 -36.22549 -35.02572 -32.92480 -32.09738 -31.18778 -30.96376 -29.75531 -27.02636 -25.97043 -25.20498 -22.89403 -22.38779 -21.79795 -21.01848 -20.74406 -20.26720 -17.74866 -17.53362 -16.95326 -16.83810 -16.20301 -15.57257 -15.34817 -14.86641 -14.86215 -14.59546 -14.50956 -14.29933 -13.94994 -13.91175 -13.49545 -13.29641 -13.00600 -12.68318 -12.51624 -12.29948 -12.24508 -12.23600 -12.00121 -11.76423 -11.74635 -11.34043 -11.17326 -11.01833 -10.93369 -10.91848 -10.57249 -10.43712 -10.26928 -10.13885 -9.77502 -9.61238 -9.23049 -8.91372 -8.74878 -7.25023 -5.78848 -3.14260 2.36135 2.78716 3.30868 3.34946 3.37854 3.42920 3.55924 4.38046 4.38924 4.53765 4.57018 4.60541 4.63492 4.77836 4.81222 4.92681 4.99456 5.03199 5.10742 5.15224 5.26274 5.29580 5.31235 5.36350 5.38893 5.50222 5.51013 5.51806 5.63233 5.65311 5.75733 5.81166 5.89229 5.96496 6.01576 6.05028 6.09001 6.24715 6.35972 6.49048 6.59309 6.66108 6.71481 6.75163 7.31535 7.97658 8.04083 8.40493 9.19605 9.92187 10.12088 11.39703 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.003332 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.388625 B = 8401.015203 C = 9672.045689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 N -0.514 5.514 4 C 0.016 3.984 5 C 0.061 3.939 6 O -0.378 6.378 7 C 0.079 3.921 8 C 0.029 3.971 9 H 0.070 0.930 10 C 0.520 3.480 11 O -0.517 6.517 12 N -0.722 5.722 13 C 0.142 3.858 14 H 0.088 0.912 15 C -0.162 4.162 16 C -0.123 4.123 17 C -0.129 4.129 18 C 0.157 3.843 19 N -0.758 5.758 20 C -0.245 4.245 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.935 5.935 24 Si 0.885 3.115 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.278 1.278 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.401 0.599 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.025 0.975 48 H 0.026 0.974 49 H 0.360 0.640 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 25.585 0.992 27.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 N -0.240 5.240 4 C -0.112 4.112 5 C -0.016 4.016 6 O -0.296 6.296 7 C 0.001 3.999 8 C -0.083 4.083 9 H 0.088 0.912 10 C 0.305 3.695 11 O -0.391 6.391 12 N -0.374 5.374 13 C 0.037 3.963 14 H 0.106 0.894 15 C -0.220 4.220 16 C -0.161 4.161 17 C -0.167 4.167 18 C 0.030 3.970 19 N -0.403 5.403 20 C -0.375 4.375 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.583 5.583 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.204 1.204 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.235 0.765 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.043 0.957 48 H 0.044 0.956 49 H 0.192 0.808 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.630 25.767 1.850 27.935 hybrid contribution -0.549 -0.833 -1.466 1.773 sum -11.179 24.934 0.384 27.328 Atomic orbital electron populations 1.21703 0.94227 1.01729 1.02282 1.22205 0.96943 0.87615 1.01381 1.62043 1.14201 1.18774 1.28971 1.22891 1.02607 0.95848 0.89839 1.22733 0.82525 0.95118 1.01208 1.88020 1.26176 1.78646 1.36803 1.22515 1.01507 0.89185 0.86687 1.22334 0.91499 0.98983 0.95509 0.91215 1.20117 0.82440 0.78459 0.88519 1.90719 1.41169 1.57150 1.50083 1.46194 1.15393 1.58193 1.17669 1.21057 1.00093 0.92945 0.82155 0.89375 1.22167 1.01501 0.99287 0.99075 1.21846 0.97586 0.95096 1.01598 1.21782 0.99764 0.95865 0.99302 1.20629 0.94585 0.87797 0.94021 1.42734 1.18445 1.21671 1.57499 1.19079 0.99009 0.95459 1.23916 0.89222 1.24680 0.97836 0.96616 1.00089 1.69700 1.36758 1.09985 1.41824 0.86540 0.85450 0.76916 0.79582 1.21122 1.21635 1.20399 0.92967 0.92113 0.91561 0.94630 0.89989 0.88865 0.93613 0.91931 0.88099 0.91409 0.87889 0.76483 0.92411 0.92291 0.91460 0.91158 0.90005 0.92030 0.92273 0.95663 0.95629 0.80771 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.96 37.16 0.37 -0.99 16 2 C 0.05 0.50 5.36 -3.82 -0.02 0.48 16 3 N -0.51 -5.37 4.23 -227.73 -0.96 -6.34 16 4 C 0.02 0.13 5.46 -3.71 -0.02 0.11 16 5 C 0.06 0.47 7.01 37.21 0.26 0.73 16 6 O -0.38 -3.63 10.83 -35.23 -0.38 -4.01 16 7 C 0.08 0.70 6.27 37.21 0.23 0.93 16 8 C 0.03 0.29 2.38 -68.75 -0.16 0.13 16 9 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 10 C 0.52 5.94 5.70 -10.99 -0.06 5.88 16 11 O -0.52 -7.69 15.26 5.56 0.08 -7.61 16 12 N -0.72 -6.98 4.53 -53.81 -0.24 -7.23 16 13 C 0.14 1.45 2.57 -67.93 -0.17 1.27 16 14 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 15 C -0.16 -1.44 9.48 37.16 0.35 -1.09 16 16 C -0.12 -1.30 4.75 -26.73 -0.13 -1.42 16 17 C -0.13 -1.84 5.22 -26.73 -0.14 -1.98 16 18 C 0.16 2.95 6.26 -4.04 -0.03 2.93 16 19 N -0.76 -18.24 5.41 -59.91 -0.32 -18.56 16 20 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 21 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 22 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 23 N -0.93 -29.61 13.97 55.49 0.78 -28.84 16 24 Si 0.88 22.33 27.74 -169.99 -4.71 17.62 16 25 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.28 -6.63 6.52 56.52 0.37 -6.27 16 28 H 0.05 0.42 6.72 -51.93 -0.35 0.08 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.38 8.05 -51.93 -0.42 -0.04 16 32 H 0.08 1.07 5.97 -51.93 -0.31 0.76 16 33 H 0.09 0.66 6.62 -51.93 -0.34 0.31 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.40 3.16 8.60 -40.82 -0.35 2.81 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 49 H 0.36 8.47 5.53 -40.82 -0.23 8.25 16 50 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 392.56 15.07 5.92 5.92 Total: -1.00 -34.41 392.56 -8.77 -43.18 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -9.15 Total: 6.07 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 0.23 Total: -0.20 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.76 Total: -60.96 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.30 Total: -11.62 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.41 -8.77 -43.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755505430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.527 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds