Wall clock time and date at job start Tue Mar 31 2020 11:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.46932 * 2 1 4 4 C 1.47009 * 111.00300 * 288.16639 * 3 2 1 5 5 C 1.53098 * 109.26195 * 177.60987 * 4 3 2 6 6 O 1.43010 * 109.25753 * 56.84792 * 5 4 3 7 7 C 1.43018 * 113.74179 * 301.33361 * 6 5 4 8 8 C 1.47013 * 110.99848 * 164.53187 * 3 2 1 9 9 H 1.08999 * 109.54567 * 62.43989 * 8 3 2 10 10 C 1.50700 * 109.50919 * 302.32800 * 8 3 2 11 11 O 1.21282 * 120.00028 * 331.88651 * 10 8 3 12 12 N 1.34771 * 120.00463 * 151.61491 * 10 8 3 13 13 C 1.46499 * 120.00428 * 180.27343 * 12 10 8 14 14 H 1.09001 * 109.47008 * 35.00166 * 13 12 10 15 15 C 1.52998 * 109.47397 * 274.99705 * 13 12 10 16 16 C 1.52999 * 109.47238 * 154.99726 * 13 12 10 17 17 C 1.53004 * 109.47340 * 295.00281 * 16 13 12 18 18 C 1.53003 * 109.47360 * 179.97438 * 17 16 13 19 19 N 1.46493 * 109.47202 * 179.97438 * 18 17 16 20 20 C 1.36935 * 120.00130 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99760 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00299 * 180.02562 * 20 19 18 23 23 N 1.31617 * 120.00308 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99923 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47066 * 89.99850 * 24 22 20 26 26 H 1.48493 * 109.47327 * 210.00268 * 24 22 20 27 27 H 1.48503 * 109.46958 * 329.99962 * 24 22 20 28 28 H 1.08996 * 109.47510 * 59.99957 * 1 2 3 29 29 H 1.09001 * 109.46863 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47370 * 299.99704 * 1 2 3 31 31 H 1.08997 * 109.47161 * 240.00051 * 2 1 3 32 32 H 1.09001 * 109.47069 * 119.99863 * 2 1 3 33 33 H 1.08999 * 109.50723 * 57.67405 * 4 3 2 34 34 H 1.08999 * 109.54441 * 297.56570 * 4 3 2 35 35 H 1.09006 * 109.50230 * 296.91269 * 5 4 3 36 36 H 1.08995 * 109.54281 * 176.80933 * 5 4 3 37 37 H 1.09003 * 109.50514 * 298.73598 * 7 6 5 38 38 H 1.08995 * 109.54250 * 178.62806 * 7 6 5 39 39 H 0.97006 * 119.99641 * 0.27705 * 12 10 8 40 40 H 1.08996 * 109.46994 * 300.00079 * 15 13 12 41 41 H 1.09006 * 109.46863 * 59.99893 * 15 13 12 42 42 H 1.08997 * 109.47066 * 179.97438 * 15 13 12 43 43 H 1.09007 * 109.47265 * 55.00122 * 16 13 12 44 44 H 1.09001 * 109.47243 * 175.00113 * 16 13 12 45 45 H 1.08998 * 109.47083 * 300.00168 * 17 16 13 46 46 H 1.09001 * 109.47089 * 59.99739 * 17 16 13 47 47 H 1.08998 * 109.47448 * 300.00298 * 18 17 16 48 48 H 1.09007 * 109.46580 * 60.00226 * 18 17 16 49 49 H 0.97006 * 119.99898 * 0.02562 * 19 18 17 50 50 H 0.97001 * 120.00192 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7918 2.0244 -1.3040 5 6 2.2610 3.4803 -1.2415 6 8 3.6371 3.5162 -0.8539 7 6 3.8951 2.9026 0.4119 8 6 3.4424 1.4408 0.3660 9 1 4.0311 0.9006 -0.3754 10 6 3.6386 0.8105 1.7208 11 8 2.7365 0.8221 2.5314 12 7 4.8145 0.2291 2.0297 13 6 5.0032 -0.3888 3.3445 14 1 4.0667 -0.8408 3.6713 15 6 5.4337 0.6785 4.3527 16 6 6.0844 -1.4673 3.2507 17 6 5.6008 -2.5964 2.3384 18 6 6.6823 -3.6746 2.2441 19 7 6.2190 -4.7559 1.3711 20 6 7.0239 -5.8385 1.1359 21 1 8.0002 -5.8952 1.5943 22 6 6.5851 -6.8629 0.3082 23 7 7.3586 -7.9036 0.0825 24 14 4.8969 -6.7643 -0.4853 25 1 5.0071 -6.0841 -1.8007 26 1 4.3608 -8.1353 -0.6803 27 1 3.9806 -5.9951 0.3945 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.7288 1.9945 -1.5433 34 1 2.3530 1.4939 -2.0732 35 1 1.6627 4.0244 -0.5105 36 1 2.1467 3.9427 -2.2218 37 1 3.3443 3.4298 1.1909 38 1 4.9626 2.9465 0.6276 39 1 5.5361 0.2199 1.3814 40 1 6.3702 1.1303 4.0258 41 1 4.6634 1.4468 4.4195 42 1 5.5736 0.2187 5.3310 43 1 6.9959 -1.0333 2.8397 44 1 6.2878 -1.8653 4.2449 45 1 4.6893 -3.0304 2.7494 46 1 5.3974 -2.1984 1.3443 47 1 7.5935 -3.2403 1.8329 48 1 6.8860 -4.0727 3.2382 49 1 5.3420 -4.7051 0.9597 50 1 7.0521 -8.6193 -0.4962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755505430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:29 Heat of formation + Delta-G solvation = -96.797728 kcal Electronic energy + Delta-G solvation = -27302.985559 eV Core-core repulsion = 23557.308257 eV Total energy + Delta-G solvation = -3745.677302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67387 -39.93732 -38.05983 -37.11978 -36.54166 -34.29487 -33.38350 -32.27303 -31.88928 -30.93581 -27.74698 -27.37382 -25.97218 -24.46545 -23.18365 -22.82796 -22.41994 -21.60519 -21.06116 -19.64868 -18.56550 -17.76055 -17.56570 -16.99739 -16.62432 -16.32206 -16.10800 -15.94300 -15.82198 -15.44160 -15.42411 -15.16124 -14.97161 -14.66709 -14.35858 -14.09227 -13.86822 -13.55962 -13.51682 -13.24679 -13.07635 -12.93594 -12.86443 -12.77243 -12.51002 -12.42218 -12.15271 -12.07596 -11.91652 -11.89670 -11.74918 -11.61923 -11.56038 -11.03892 -10.99859 -10.60944 -10.10006 -9.49996 -9.32685 -8.06295 -5.39812 1.34001 1.37313 1.44980 1.49462 1.99859 2.44744 2.59969 2.89787 3.25127 3.46948 3.65670 3.67702 3.86277 3.88435 3.89910 4.02017 4.07938 4.16522 4.18624 4.30865 4.36653 4.38684 4.47821 4.54064 4.56168 4.61947 4.63679 4.70720 4.81105 4.83593 4.87871 4.90206 4.91524 4.99355 4.99622 5.11015 5.24600 5.30823 5.33578 5.39947 5.56084 5.72683 5.73595 5.86602 6.01539 6.18435 6.52659 7.04741 7.20897 7.81881 7.99754 9.15381 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.003332 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.388625 B = 8401.015203 C = 9672.045689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.048 3.952 3 N -0.527 5.527 4 C 0.017 3.983 5 C 0.059 3.941 6 O -0.390 6.390 7 C 0.082 3.918 8 C 0.031 3.969 9 H 0.076 0.924 10 C 0.522 3.478 11 O -0.556 6.556 12 N -0.712 5.712 13 C 0.146 3.854 14 H 0.065 0.935 15 C -0.155 4.155 16 C -0.111 4.111 17 C -0.116 4.116 18 C 0.152 3.848 19 N -0.763 5.763 20 C -0.238 4.238 21 H 0.057 0.943 22 C -0.064 4.064 23 N -0.984 5.984 24 Si 0.956 3.044 25 H -0.275 1.275 26 H -0.294 1.294 27 H -0.256 1.256 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.124 0.876 37 H 0.058 0.942 38 H 0.122 0.878 39 H 0.412 0.588 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.052 0.948 46 H 0.063 0.937 47 H 0.030 0.970 48 H 0.023 0.977 49 H 0.364 0.636 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.878 27.616 0.312 29.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.080 4.080 3 N -0.254 5.254 4 C -0.111 4.111 5 C -0.018 4.018 6 O -0.308 6.308 7 C 0.005 3.995 8 C -0.081 4.081 9 H 0.094 0.906 10 C 0.307 3.693 11 O -0.433 6.433 12 N -0.366 5.366 13 C 0.042 3.958 14 H 0.084 0.916 15 C -0.213 4.213 16 C -0.150 4.150 17 C -0.154 4.154 18 C 0.026 3.974 19 N -0.409 5.409 20 C -0.369 4.369 21 H 0.075 0.925 22 C -0.256 4.256 23 N -0.634 5.634 24 Si 0.783 3.217 25 H -0.201 1.201 26 H -0.221 1.221 27 H -0.181 1.181 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.142 0.858 37 H 0.076 0.924 38 H 0.140 0.860 39 H 0.248 0.752 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.048 0.952 48 H 0.041 0.959 49 H 0.197 0.803 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.446 27.851 1.182 30.134 hybrid contribution -0.201 -1.447 -1.196 1.888 sum -11.647 26.404 -0.014 28.858 Atomic orbital electron populations 1.21659 0.93305 1.02020 1.02426 1.22138 0.97754 0.87957 1.00148 1.62061 1.14536 1.18417 1.30353 1.22970 1.03470 0.95964 0.88669 1.22896 0.81669 0.94800 1.02405 1.88008 1.27261 1.78641 1.36900 1.22544 1.02495 0.88165 0.86322 1.22356 0.91562 0.99666 0.94550 0.90581 1.20378 0.82197 0.78007 0.88684 1.90701 1.42500 1.58801 1.51341 1.46140 1.15300 1.57322 1.17790 1.20955 0.98901 0.93257 0.82720 0.91642 1.22094 1.01669 0.98401 0.99140 1.21760 0.98141 0.93768 1.01288 1.21651 0.97789 0.95507 1.00490 1.20853 0.96276 0.87602 0.92685 1.42801 1.18109 1.21661 1.58290 1.19083 0.98284 0.96761 1.22750 0.92462 1.25531 1.02343 0.96356 1.01364 1.69882 1.39182 1.11117 1.43237 0.85395 0.80419 0.76914 0.78963 1.20148 1.22057 1.18070 0.91285 0.91781 0.92853 0.94432 0.92503 0.87589 0.93693 0.92016 0.85807 0.92404 0.85987 0.75152 0.90782 0.93712 0.90518 0.89280 0.89151 0.92925 0.91843 0.95208 0.95925 0.80311 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.96 71.98 0.72 -1.77 16 2 C 0.05 1.01 5.36 86.30 0.46 1.47 16 3 N -0.53 -10.46 4.23 -874.42 -3.70 -14.16 16 4 C 0.02 0.25 5.46 86.32 0.47 0.72 16 5 C 0.06 0.78 7.01 72.01 0.50 1.28 16 6 O -0.39 -6.72 10.83 -148.98 -1.61 -8.33 16 7 C 0.08 1.33 6.27 72.01 0.45 1.78 16 8 C 0.03 0.58 2.38 44.18 0.10 0.68 16 9 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 10 C 0.52 11.49 5.70 87.66 0.50 11.99 16 11 O -0.56 -16.62 15.26 -3.04 -0.05 -16.67 16 12 N -0.71 -12.57 4.53 -442.54 -2.00 -14.57 16 13 C 0.15 2.73 2.57 44.99 0.12 2.85 16 14 H 0.07 1.57 7.58 -2.39 -0.02 1.55 16 15 C -0.15 -2.44 9.48 71.98 0.68 -1.76 16 16 C -0.11 -2.06 4.75 30.60 0.15 -1.92 16 17 C -0.12 -3.09 5.22 30.60 0.16 -2.93 16 18 C 0.15 5.49 6.26 86.38 0.54 6.03 16 19 N -0.76 -35.90 5.41 -343.45 -1.86 -37.76 16 20 C -0.24 -13.75 10.47 84.03 0.88 -12.87 16 21 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 22 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 23 N -0.98 -63.53 13.97 21.65 0.30 -63.23 16 24 Si 0.96 45.85 27.74 68.60 1.90 47.75 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.26 -11.21 6.52 99.48 0.65 -10.56 16 28 H 0.07 1.00 6.72 -2.39 -0.02 0.98 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.04 0.76 8.05 -2.39 -0.02 0.74 16 32 H 0.06 1.49 5.97 -2.39 -0.01 1.48 16 33 H 0.11 1.26 6.62 -2.39 -0.02 1.24 16 34 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.41 5.45 8.60 -92.70 -0.80 4.65 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.06 1.64 7.75 -2.39 -0.02 1.62 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.02 0.84 8.14 -2.38 -0.02 0.83 16 49 H 0.36 16.41 5.53 -92.70 -0.51 15.90 16 50 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -75.30 392.56 -1.27 -76.57 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -0.46 Total: 28.20 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 6.20 Total: 2.19 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -7.26 Total: -129.72 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -1.66 Total: -25.00 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.90 Total: 47.75 kcal Total: -75.30 -1.27 -76.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755505430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.229 kcal (2) G-P(sol) polarization free energy of solvation -75.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds