Wall clock time and date at job start Tue Mar 31 2020 11:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46890 * 109.47174 * 2 1 4 4 C 1.47013 * 111.00431 * 313.64006 * 3 2 1 5 5 C 1.53103 * 109.25987 * 177.61022 * 4 3 2 6 6 O 1.43091 * 109.28277 * 56.84871 * 5 4 3 7 7 C 1.43020 * 113.68830 * 301.35605 * 6 5 4 8 8 C 1.47016 * 111.00239 * 189.99985 * 3 2 1 9 9 H 1.09001 * 109.53703 * 62.43927 * 8 3 2 10 10 C 1.50701 * 109.50504 * 302.33326 * 8 3 2 11 11 O 1.21279 * 120.00200 * 0.21437 * 10 8 3 12 12 N 1.34782 * 119.99588 * 180.21518 * 10 8 3 13 13 C 1.46499 * 119.99676 * 179.97438 * 12 10 8 14 14 H 1.09002 * 109.47360 * 324.99770 * 13 12 10 15 15 C 1.52998 * 109.47285 * 84.99828 * 13 12 10 16 16 C 1.52995 * 109.47322 * 205.00045 * 13 12 10 17 17 C 1.53007 * 109.47199 * 64.99586 * 16 13 12 18 18 C 1.53004 * 109.46886 * 180.02562 * 17 16 13 19 19 N 1.46505 * 109.46760 * 180.02562 * 18 17 16 20 20 C 1.36936 * 119.99667 * 180.02562 * 19 18 17 21 21 H 1.07994 * 119.99994 * 0.02562 * 20 19 18 22 22 C 1.38814 * 119.99387 * 179.97438 * 20 19 18 23 23 N 1.31609 * 120.00484 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99470 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47442 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47033 * 120.00257 * 24 22 20 27 27 H 1.48501 * 109.47295 * 239.99987 * 24 22 20 28 28 H 1.08999 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47005 * 300.00031 * 1 2 3 30 30 H 1.09002 * 109.46979 * 59.99332 * 1 2 3 31 31 H 1.09001 * 109.46488 * 239.99910 * 2 1 3 32 32 H 1.08994 * 109.47054 * 120.00335 * 2 1 3 33 33 H 1.09000 * 109.50641 * 297.53969 * 4 3 2 34 34 H 1.08990 * 109.51138 * 57.66963 * 4 3 2 35 35 H 1.08995 * 109.50599 * 176.78096 * 5 4 3 36 36 H 1.09004 * 109.49940 * 296.90836 * 5 4 3 37 37 H 1.09002 * 109.50941 * 298.69500 * 7 6 5 38 38 H 1.09003 * 109.50633 * 178.60964 * 7 6 5 39 39 H 0.96999 * 119.99951 * 359.97438 * 12 10 8 40 40 H 1.09005 * 109.47334 * 299.99842 * 15 13 12 41 41 H 1.08991 * 109.47266 * 60.00079 * 15 13 12 42 42 H 1.09006 * 109.47104 * 180.02562 * 15 13 12 43 43 H 1.08998 * 109.47393 * 184.99757 * 16 13 12 44 44 H 1.09006 * 109.46893 * 305.00128 * 16 13 12 45 45 H 1.08998 * 109.47088 * 300.00359 * 17 16 13 46 46 H 1.08997 * 109.46548 * 60.00339 * 17 16 13 47 47 H 1.08998 * 109.47333 * 299.99943 * 18 17 16 48 48 H 1.09002 * 109.46781 * 60.00592 * 18 17 16 49 49 H 0.97000 * 119.99843 * 359.97438 * 19 18 17 50 50 H 0.97006 * 120.00431 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.3024 2.1974 -0.9932 5 6 1.8010 3.6430 -0.9182 6 8 3.2172 3.6655 -1.1213 7 6 3.9465 2.8843 -0.1709 8 6 3.4697 1.4311 -0.2383 9 1 3.6903 1.0210 -1.2238 10 6 4.1788 0.6193 0.8149 11 8 3.5401 0.0541 1.6770 12 7 5.5230 0.5216 0.7986 13 6 6.2124 -0.2671 1.8227 14 1 5.6817 -0.1754 2.7704 15 6 6.2469 -1.7364 1.3976 16 6 7.6430 0.2499 1.9874 17 6 7.6092 1.6794 2.5319 18 6 9.0398 2.1966 2.6959 19 7 9.0074 3.5651 3.2178 20 6 10.1777 4.2384 3.4467 21 1 11.1244 3.7607 3.2422 22 6 10.1469 5.5353 3.9408 23 7 8.9932 6.1176 4.1896 24 14 11.7433 6.4535 4.2537 25 1 12.8928 5.5840 3.8962 26 1 11.7773 7.6843 3.4236 27 1 11.8289 6.8223 5.6896 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.4877 1.7999 -1.9911 34 1 0.2334 2.1698 -0.7826 35 1 1.3132 4.2368 -1.6912 36 1 1.5673 4.0581 0.0622 37 1 3.7753 3.2774 0.8313 38 1 5.0107 2.9294 -0.4026 39 1 6.0338 0.9734 0.1088 40 1 5.2277 -2.1048 1.2804 41 1 6.7776 -1.8281 0.4501 42 1 6.7595 -2.3233 2.1599 43 1 8.1832 -0.3914 2.6837 44 1 8.1460 0.2413 1.0204 45 1 7.0689 2.3207 1.8355 46 1 7.1062 1.6880 3.4988 47 1 9.5804 1.5553 3.3921 48 1 9.5423 2.1880 1.7287 49 1 8.1571 3.9945 3.4005 50 1 8.9717 7.0237 4.5352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755505432.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:35 Heat of formation + Delta-G solvation = -68.344426 kcal Electronic energy + Delta-G solvation = -27204.250884 eV Core-core repulsion = 23459.807410 eV Total energy + Delta-G solvation = -3744.443474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.81067 -39.04033 -36.99145 -36.10704 -34.81755 -32.99156 -32.07373 -30.92103 -30.70706 -29.36021 -26.95505 -25.72379 -25.06308 -23.10261 -22.52176 -21.61754 -20.84148 -20.63844 -20.22311 -17.70071 -17.00437 -16.87950 -16.50612 -16.08584 -15.52951 -15.28087 -15.00350 -14.75496 -14.61048 -14.45708 -14.29538 -13.84390 -13.63435 -13.37228 -13.14490 -12.97472 -12.76862 -12.44974 -12.21726 -12.11978 -12.10461 -11.90153 -11.63910 -11.34645 -11.25052 -11.15397 -10.86006 -10.80716 -10.78814 -10.46092 -10.40601 -10.13106 -9.97531 -9.68248 -9.54343 -9.15834 -8.85648 -8.59164 -6.89805 -5.74396 -3.03122 2.46228 2.86679 3.43945 3.44537 3.49805 3.52348 3.67659 4.45833 4.49903 4.58715 4.63049 4.72440 4.76055 4.86111 4.90246 5.02843 5.03578 5.12820 5.13238 5.23079 5.27146 5.40127 5.45925 5.47617 5.54004 5.59077 5.60495 5.61804 5.65798 5.76571 5.89391 5.93731 5.96969 6.03377 6.12161 6.20516 6.35760 6.41152 6.47123 6.58640 6.72301 6.82693 6.86977 6.90388 7.38678 7.71987 8.11963 8.44559 9.55488 10.14459 10.48697 11.48596 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.002910 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.800733 B = 9620.044160 C =11078.887700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.037 3.963 3 N -0.514 5.514 4 C 0.013 3.987 5 C 0.058 3.942 6 O -0.377 6.377 7 C 0.073 3.927 8 C 0.031 3.969 9 H 0.073 0.927 10 C 0.524 3.476 11 O -0.521 6.521 12 N -0.720 5.720 13 C 0.142 3.858 14 H 0.090 0.910 15 C -0.161 4.161 16 C -0.123 4.123 17 C -0.125 4.125 18 C 0.153 3.847 19 N -0.735 5.735 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.024 0.976 32 H 0.112 0.888 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.400 0.600 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.017 0.983 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.969 -14.359 -13.052 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.090 4.090 3 N -0.240 5.240 4 C -0.115 4.115 5 C -0.019 4.019 6 O -0.295 6.295 7 C -0.004 4.004 8 C -0.081 4.081 9 H 0.091 0.909 10 C 0.309 3.691 11 O -0.396 6.396 12 N -0.372 5.372 13 C 0.038 3.962 14 H 0.108 0.892 15 C -0.220 4.220 16 C -0.161 4.161 17 C -0.163 4.163 18 C 0.025 3.975 19 N -0.379 5.379 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.130 0.870 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.235 0.765 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.035 0.965 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.252 -14.440 -12.087 24.875 hybrid contribution 0.864 0.410 -0.742 1.210 sum -15.387 -14.030 -12.829 24.458 Atomic orbital electron populations 1.21918 0.95118 1.01881 1.02141 1.22516 0.95570 0.88310 1.02604 1.62072 1.01088 1.12409 1.48463 1.22951 1.00124 0.94532 0.93861 1.22769 0.81401 0.95166 1.02519 1.88053 1.18198 1.69582 1.53666 1.22628 0.96472 0.86897 0.94428 1.22336 0.90311 0.98091 0.97411 0.90900 1.20125 0.82359 0.80891 0.85762 1.90609 1.65236 1.46536 1.37249 1.46125 1.06300 1.52724 1.32061 1.21056 0.93283 0.89956 0.91919 0.89209 1.22167 1.02136 0.95935 1.01746 1.21855 0.94417 0.97712 1.02153 1.21733 0.98881 0.94507 1.01199 1.20646 0.93206 0.87471 0.96148 1.42389 1.06515 1.10883 1.78081 1.19279 0.86410 0.95575 1.35773 0.91186 1.24752 0.96774 0.97341 1.02249 1.69668 1.23147 1.14125 1.51231 0.86122 0.82812 0.79781 0.77517 1.20582 1.21859 1.21861 0.92156 0.91616 0.92866 0.95743 0.87001 0.94028 0.88594 0.88212 0.91807 0.91082 0.87630 0.76510 0.92457 0.92560 0.91487 0.90231 0.91410 0.92082 0.91914 0.96534 0.96585 0.78322 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.18 37.16 0.34 -0.91 16 2 C 0.04 0.38 5.33 -3.83 -0.02 0.36 16 3 N -0.51 -5.60 4.51 -227.74 -1.03 -6.63 16 4 C 0.01 0.12 4.94 -3.71 -0.02 0.10 16 5 C 0.06 0.54 7.01 37.21 0.26 0.80 16 6 O -0.38 -4.39 10.83 -35.23 -0.38 -4.77 16 7 C 0.07 0.81 6.16 37.21 0.23 1.04 16 8 C 0.03 0.33 2.36 -68.75 -0.16 0.17 16 9 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 10 C 0.52 6.32 6.85 -10.98 -0.08 6.25 16 11 O -0.52 -7.88 13.36 5.56 0.07 -7.81 16 12 N -0.72 -7.45 4.43 -53.81 -0.24 -7.68 16 13 C 0.14 1.55 2.57 -67.93 -0.17 1.37 16 14 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 15 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 16 C -0.12 -1.39 4.75 -26.73 -0.13 -1.52 16 17 C -0.13 -1.93 5.22 -26.73 -0.14 -2.07 16 18 C 0.15 3.03 6.26 -4.04 -0.03 3.01 16 19 N -0.73 -18.92 5.60 -59.90 -0.34 -19.26 16 20 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 23 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 24 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.37 6.28 -51.93 -0.33 0.05 16 31 H 0.02 0.24 8.08 -51.93 -0.42 -0.18 16 32 H 0.11 1.43 5.48 -51.93 -0.28 1.14 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.71 6.05 -51.93 -0.31 0.39 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.11 1.02 7.67 -51.93 -0.40 0.62 16 39 H 0.40 3.42 8.09 -40.82 -0.33 3.09 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.94 7.75 -51.93 -0.40 0.53 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.38 10.40 7.67 -40.82 -0.31 10.09 16 50 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 391.19 15.07 5.90 5.90 Total: -1.00 -33.55 391.19 -9.19 -42.73 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -9.07 Total: 7.91 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 0.19 Total: -0.07 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.88 Total: -61.49 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.31 Total: -12.58 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.55 -9.19 -42.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755505432.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.610 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds