Wall clock time and date at job start Tue Mar 31 2020 11:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46890 * 109.47174 * 2 1 4 4 C 1.47013 * 111.00431 * 313.64006 * 3 2 1 5 5 C 1.53103 * 109.25987 * 177.61022 * 4 3 2 6 6 O 1.43091 * 109.28277 * 56.84871 * 5 4 3 7 7 C 1.43020 * 113.68830 * 301.35605 * 6 5 4 8 8 C 1.47016 * 111.00239 * 189.99985 * 3 2 1 9 9 H 1.09001 * 109.53703 * 62.43927 * 8 3 2 10 10 C 1.50701 * 109.50504 * 302.33326 * 8 3 2 11 11 O 1.21279 * 120.00200 * 0.21437 * 10 8 3 12 12 N 1.34782 * 119.99588 * 180.21518 * 10 8 3 13 13 C 1.46499 * 119.99676 * 179.97438 * 12 10 8 14 14 H 1.09002 * 109.47360 * 324.99770 * 13 12 10 15 15 C 1.52998 * 109.47285 * 84.99828 * 13 12 10 16 16 C 1.52995 * 109.47322 * 205.00045 * 13 12 10 17 17 C 1.53007 * 109.47199 * 64.99586 * 16 13 12 18 18 C 1.53004 * 109.46886 * 180.02562 * 17 16 13 19 19 N 1.46505 * 109.46760 * 180.02562 * 18 17 16 20 20 C 1.36936 * 119.99667 * 180.02562 * 19 18 17 21 21 H 1.07994 * 119.99994 * 0.02562 * 20 19 18 22 22 C 1.38814 * 119.99387 * 179.97438 * 20 19 18 23 23 N 1.31609 * 120.00484 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99470 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47442 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47033 * 120.00257 * 24 22 20 27 27 H 1.48501 * 109.47295 * 239.99987 * 24 22 20 28 28 H 1.08999 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47005 * 300.00031 * 1 2 3 30 30 H 1.09002 * 109.46979 * 59.99332 * 1 2 3 31 31 H 1.09001 * 109.46488 * 239.99910 * 2 1 3 32 32 H 1.08994 * 109.47054 * 120.00335 * 2 1 3 33 33 H 1.09000 * 109.50641 * 297.53969 * 4 3 2 34 34 H 1.08990 * 109.51138 * 57.66963 * 4 3 2 35 35 H 1.08995 * 109.50599 * 176.78096 * 5 4 3 36 36 H 1.09004 * 109.49940 * 296.90836 * 5 4 3 37 37 H 1.09002 * 109.50941 * 298.69500 * 7 6 5 38 38 H 1.09003 * 109.50633 * 178.60964 * 7 6 5 39 39 H 0.96999 * 119.99951 * 359.97438 * 12 10 8 40 40 H 1.09005 * 109.47334 * 299.99842 * 15 13 12 41 41 H 1.08991 * 109.47266 * 60.00079 * 15 13 12 42 42 H 1.09006 * 109.47104 * 180.02562 * 15 13 12 43 43 H 1.08998 * 109.47393 * 184.99757 * 16 13 12 44 44 H 1.09006 * 109.46893 * 305.00128 * 16 13 12 45 45 H 1.08998 * 109.47088 * 300.00359 * 17 16 13 46 46 H 1.08997 * 109.46548 * 60.00339 * 17 16 13 47 47 H 1.08998 * 109.47333 * 299.99943 * 18 17 16 48 48 H 1.09002 * 109.46781 * 60.00592 * 18 17 16 49 49 H 0.97000 * 119.99843 * 359.97438 * 19 18 17 50 50 H 0.97006 * 120.00431 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.3024 2.1974 -0.9932 5 6 1.8010 3.6430 -0.9182 6 8 3.2172 3.6655 -1.1213 7 6 3.9465 2.8843 -0.1709 8 6 3.4697 1.4311 -0.2383 9 1 3.6903 1.0210 -1.2238 10 6 4.1788 0.6193 0.8149 11 8 3.5401 0.0541 1.6770 12 7 5.5230 0.5216 0.7986 13 6 6.2124 -0.2671 1.8227 14 1 5.6817 -0.1754 2.7704 15 6 6.2469 -1.7364 1.3976 16 6 7.6430 0.2499 1.9874 17 6 7.6092 1.6794 2.5319 18 6 9.0398 2.1966 2.6959 19 7 9.0074 3.5651 3.2178 20 6 10.1777 4.2384 3.4467 21 1 11.1244 3.7607 3.2422 22 6 10.1469 5.5353 3.9408 23 7 8.9932 6.1176 4.1896 24 14 11.7433 6.4535 4.2537 25 1 12.8928 5.5840 3.8962 26 1 11.7773 7.6843 3.4236 27 1 11.8289 6.8223 5.6896 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.4877 1.7999 -1.9911 34 1 0.2334 2.1698 -0.7826 35 1 1.3132 4.2368 -1.6912 36 1 1.5673 4.0581 0.0622 37 1 3.7753 3.2774 0.8313 38 1 5.0107 2.9294 -0.4026 39 1 6.0338 0.9734 0.1088 40 1 5.2277 -2.1048 1.2804 41 1 6.7776 -1.8281 0.4501 42 1 6.7595 -2.3233 2.1599 43 1 8.1832 -0.3914 2.6837 44 1 8.1460 0.2413 1.0204 45 1 7.0689 2.3207 1.8355 46 1 7.1062 1.6880 3.4988 47 1 9.5804 1.5553 3.3921 48 1 9.5423 2.1880 1.7287 49 1 8.1571 3.9945 3.4005 50 1 8.9717 7.0237 4.5352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755505432.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:34 Heat of formation + Delta-G solvation = -93.338290 kcal Electronic energy + Delta-G solvation = -27205.334699 eV Core-core repulsion = 23459.807410 eV Total energy + Delta-G solvation = -3745.527289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.69679 -39.92676 -38.05117 -37.09635 -36.40009 -34.29417 -33.41096 -31.98508 -31.63899 -30.69931 -27.73803 -27.22881 -25.96787 -24.77480 -23.38144 -22.63629 -22.21168 -21.55673 -21.08391 -19.12339 -18.57469 -17.78102 -17.33941 -16.98156 -16.64958 -16.33150 -16.13692 -15.89457 -15.73945 -15.55854 -15.36046 -15.19474 -15.11345 -14.53135 -14.27092 -13.96187 -13.78534 -13.42364 -13.31736 -13.10993 -13.01216 -12.82319 -12.80284 -12.66087 -12.38892 -12.37799 -12.21810 -12.07948 -12.00410 -11.83486 -11.69862 -11.57411 -11.48516 -10.98994 -10.93767 -10.46925 -10.09164 -9.38259 -8.99823 -7.95256 -5.24462 1.47374 1.48460 1.51682 1.58618 2.01315 2.56124 2.63517 2.89987 3.38650 3.59133 3.63614 3.74601 3.89286 3.91539 3.99599 4.11249 4.12350 4.18659 4.29910 4.31083 4.38925 4.41941 4.52968 4.57967 4.59659 4.62990 4.69061 4.75469 4.83160 4.88015 4.89434 4.93010 4.95480 5.00726 5.12904 5.18099 5.24018 5.31423 5.39922 5.44423 5.51604 5.60572 5.79990 5.97122 6.02504 6.27403 6.52455 7.21814 7.32938 8.10473 8.32178 9.28688 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.002910 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.800733 B = 9620.044160 C =11078.887700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.040 3.960 3 N -0.534 5.534 4 C 0.017 3.983 5 C 0.053 3.947 6 O -0.391 6.391 7 C 0.076 3.924 8 C 0.038 3.962 9 H 0.089 0.911 10 C 0.521 3.479 11 O -0.555 6.555 12 N -0.711 5.711 13 C 0.146 3.854 14 H 0.064 0.936 15 C -0.153 4.153 16 C -0.109 4.109 17 C -0.113 4.113 18 C 0.150 3.850 19 N -0.751 5.751 20 C -0.245 4.245 21 H 0.077 0.923 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.975 3.025 25 H -0.264 1.264 26 H -0.292 1.292 27 H -0.294 1.294 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.117 0.883 39 H 0.411 0.589 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.044 0.956 47 H 0.019 0.981 48 H 0.026 0.974 49 H 0.372 0.628 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.348 -15.325 -14.765 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 N -0.261 5.261 4 C -0.110 4.110 5 C -0.024 4.024 6 O -0.309 6.309 7 C -0.002 4.002 8 C -0.074 4.074 9 H 0.106 0.894 10 C 0.307 3.693 11 O -0.434 6.434 12 N -0.364 5.364 13 C 0.041 3.959 14 H 0.083 0.917 15 C -0.211 4.211 16 C -0.147 4.147 17 C -0.151 4.151 18 C 0.024 3.976 19 N -0.393 5.393 20 C -0.377 4.377 21 H 0.095 0.905 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.803 3.197 25 H -0.189 1.189 26 H -0.219 1.219 27 H -0.221 1.221 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.142 0.858 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.135 0.865 39 H 0.248 0.752 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.037 0.963 48 H 0.044 0.956 49 H 0.203 0.797 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.599 -15.445 -13.835 25.948 hybrid contribution 0.654 0.670 -0.209 0.960 sum -14.945 -14.775 -14.044 25.276 Atomic orbital electron populations 1.21875 0.93459 1.02683 1.02433 1.22410 0.96929 0.87931 1.01455 1.62048 1.01320 1.12954 1.49758 1.22989 1.00674 0.93698 0.93665 1.22974 0.80425 0.95971 1.02983 1.88030 1.19497 1.69755 1.53658 1.22597 0.97244 0.87060 0.93316 1.22266 0.90371 0.97407 0.97404 0.89401 1.20424 0.82701 0.80538 0.85609 1.90607 1.66037 1.48043 1.38667 1.46081 1.05951 1.52346 1.32020 1.20961 0.92557 0.91211 0.91142 0.91747 1.22084 1.01725 0.94417 1.02911 1.21754 0.94932 0.94837 1.03223 1.21595 0.95831 0.97051 1.00607 1.20863 0.96027 0.84748 0.95995 1.42668 1.05313 1.12972 1.78379 1.19703 0.87529 0.95896 1.34559 0.90501 1.25615 1.00042 0.98501 1.02933 1.69829 1.25360 1.14257 1.52752 0.85055 0.79391 0.78340 0.76870 1.18851 1.21924 1.22104 0.91167 0.92522 0.91253 0.95280 0.89710 0.93247 0.87077 0.85756 0.92747 0.93304 0.86476 0.75217 0.93780 0.90903 0.90386 0.89166 0.89272 0.92217 0.93677 0.96343 0.95565 0.79693 0.94020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.18 71.98 0.66 -1.58 16 2 C 0.04 0.81 5.33 86.31 0.46 1.27 16 3 N -0.53 -11.40 4.51 -874.42 -3.94 -15.34 16 4 C 0.02 0.27 4.94 86.32 0.43 0.70 16 5 C 0.05 0.92 7.01 72.02 0.50 1.42 16 6 O -0.39 -8.81 10.83 -148.98 -1.61 -10.42 16 7 C 0.08 1.66 6.16 72.01 0.44 2.10 16 8 C 0.04 0.79 2.36 44.18 0.10 0.89 16 9 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 10 C 0.52 12.60 6.85 87.66 0.60 13.21 16 11 O -0.56 -17.35 13.36 -3.03 -0.04 -17.39 16 12 N -0.71 -14.11 4.43 -442.54 -1.96 -16.07 16 13 C 0.15 3.02 2.57 44.99 0.12 3.14 16 14 H 0.06 1.70 7.58 -2.39 -0.02 1.68 16 15 C -0.15 -2.61 9.48 71.98 0.68 -1.93 16 16 C -0.11 -2.25 4.75 30.59 0.15 -2.10 16 17 C -0.11 -3.40 5.22 30.60 0.16 -3.24 16 18 C 0.15 5.79 6.26 86.38 0.54 6.33 16 19 N -0.75 -38.80 5.60 -343.44 -1.92 -40.73 16 20 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 21 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 22 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 23 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 24 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.82 6.28 -2.39 -0.01 0.81 16 31 H 0.03 0.55 8.08 -2.39 -0.02 0.53 16 32 H 0.08 2.23 5.48 -2.39 -0.01 2.21 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.11 1.42 6.05 -2.39 -0.01 1.41 16 35 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.12 2.19 7.67 -2.39 -0.02 2.18 16 39 H 0.41 6.34 8.09 -92.71 -0.75 5.59 16 40 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.06 1.80 7.75 -2.39 -0.02 1.78 16 46 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.37 20.60 7.67 -92.71 -0.71 19.89 16 50 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -72.82 391.19 -1.56 -74.39 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.54 Total: 34.24 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 6.15 Total: 3.04 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -7.55 Total: -132.40 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -1.65 Total: -27.81 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -72.82 -1.56 -74.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755505432.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.950 kcal (2) G-P(sol) polarization free energy of solvation -72.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds