Wall clock time and date at job start Tue Mar 31 2020 10:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86808 * 119.99767 * 2 1 4 4 H 1.48491 * 109.47058 * 240.00266 * 3 2 1 5 5 H 1.48493 * 109.46830 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46887 * 120.00109 * 3 2 1 7 7 C 1.39963 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00143 * 197.98743 * 7 2 1 9 9 C 1.40992 * 120.00015 * 17.97873 * 7 2 1 10 10 C 1.40953 * 120.11331 * 204.72686 * 9 7 2 11 11 C 1.36200 * 119.88425 * 179.97438 * 10 9 7 12 12 C 1.40013 * 120.11816 * 359.97362 * 11 10 9 13 13 C 1.47830 * 119.89136 * 180.02562 * 12 11 10 14 14 C 1.39868 * 120.12562 * 114.74890 * 13 12 11 15 15 F 1.35089 * 120.07646 * 359.97438 * 14 13 12 16 16 C 1.38276 * 119.85586 * 179.76688 * 14 13 12 17 17 F 1.35107 * 119.92989 * 180.25150 * 16 14 13 18 18 C 1.38756 * 120.13880 * 0.48577 * 16 14 13 19 19 F 1.35098 * 119.87028 * 179.74390 * 18 16 14 20 20 C 1.38756 * 120.26202 * 359.76478 * 18 16 14 21 21 F 1.35095 * 119.93205 * 179.97438 * 20 18 16 22 22 C 1.38272 * 120.13389 * 0.02562 * 20 18 16 23 23 F 1.35099 * 120.06586 * 179.97438 * 22 20 18 24 24 C 1.40026 * 120.22249 * 0.04664 * 12 11 10 25 25 C 1.36203 * 120.11375 * 359.95474 * 24 12 11 26 26 H 0.96997 * 119.99953 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.05284 * 359.69729 * 10 9 7 28 28 H 1.08002 * 119.94076 * 179.97438 * 11 10 9 29 29 H 1.07999 * 119.94578 * 179.97438 * 24 12 11 30 30 H 1.08001 * 120.05846 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6965 1.2125 7 6 2.0083 -1.2121 -0.0005 8 1 3.0486 -1.2350 0.2883 9 6 1.3550 -2.4032 -0.3780 10 6 1.8268 -3.6468 0.0885 11 6 1.1919 -4.7945 -0.2786 12 6 0.0721 -4.7405 -1.1173 13 6 -0.6135 -5.9892 -1.5122 14 6 -1.9256 -6.2324 -1.0931 15 9 -2.5700 -5.3266 -0.3255 16 6 -2.5633 -7.4001 -1.4697 17 9 -3.8324 -7.6342 -1.0699 18 6 -1.9008 -8.3342 -2.2532 19 9 -2.5272 -9.4756 -2.6137 20 6 -0.5973 -8.1008 -2.6677 21 9 0.0416 -9.0150 -3.4300 22 6 0.0494 -6.9349 -2.3011 23 9 1.3187 -6.7093 -2.7050 24 6 -0.4003 -3.5076 -1.5838 25 6 0.2275 -2.3542 -1.2225 26 1 -0.4850 0.8400 0.0004 27 1 2.6930 -3.6898 0.7322 28 1 1.5529 -5.7479 0.0779 29 1 -1.2642 -3.4712 -2.2309 30 1 -0.1379 -1.4037 -1.5825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016948232.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:47 Heat of formation + Delta-G solvation = -178.713863 kcal Electronic energy + Delta-G solvation = -25021.933203 eV Core-core repulsion = 20389.557718 eV Total energy + Delta-G solvation = -4632.375485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.042 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.98104 -49.63095 -49.11863 -48.60378 -48.31790 -38.75397 -37.38858 -34.12035 -31.62676 -30.04414 -29.71332 -28.91161 -25.68664 -23.32358 -23.24631 -21.14913 -20.65834 -18.84347 -18.71378 -18.09609 -17.59408 -17.22546 -16.65429 -16.44812 -15.95785 -15.79732 -15.64656 -15.49243 -15.07782 -14.90623 -14.86955 -14.48808 -14.30489 -14.12851 -13.60011 -13.00079 -12.99069 -12.57398 -12.26301 -11.98701 -11.82752 -11.50941 -11.24823 -11.17163 -10.92834 -10.69579 -10.01472 -9.70816 -9.46875 -8.80851 -8.80068 -7.80499 -7.57337 -7.06812 -4.63480 0.36633 0.38825 2.35305 2.76539 2.89875 2.92138 2.93836 2.94108 3.02164 3.61136 3.71727 3.74524 3.96560 4.18416 4.36075 4.39223 4.83909 5.29538 5.33376 5.61441 5.70692 5.75893 6.03805 6.09558 6.46167 6.71674 6.77836 6.95589 7.04165 7.35341 7.56696 7.77399 7.79083 7.99523 8.34152 8.57842 8.67834 9.85474 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.025141 B = 0.003666 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.433479 B = 7636.947145 C = 8427.423689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.441 4.441 8 H 0.085 0.915 9 C 0.125 3.875 10 C -0.229 4.229 11 C -0.044 4.044 12 C -0.237 4.237 13 C 0.001 3.999 14 C 0.111 3.889 15 F -0.098 7.098 16 C 0.054 3.946 17 F -0.110 7.110 18 C 0.062 3.938 19 F -0.109 7.109 20 C 0.054 3.946 21 F -0.111 7.111 22 C 0.110 3.890 23 F -0.100 7.100 24 C -0.058 4.058 25 C -0.171 4.171 26 H 0.288 0.712 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.645 -8.825 -3.179 9.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.121 3.879 10 C -0.248 4.248 11 C -0.062 4.062 12 C -0.238 4.238 13 C -0.001 4.001 14 C 0.090 3.910 15 F -0.076 7.076 16 C 0.032 3.968 17 F -0.089 7.089 18 C 0.041 3.959 19 F -0.087 7.087 20 C 0.032 3.968 21 F -0.089 7.089 22 C 0.089 3.911 23 F -0.078 7.078 24 C -0.076 4.076 25 C -0.190 4.190 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.886 -8.691 -3.168 9.690 hybrid contribution 0.062 0.407 -0.026 0.413 sum -2.824 -8.284 -3.194 9.316 Atomic orbital electron populations 1.69813 1.07819 1.30216 1.31628 1.26071 0.94828 1.01893 0.91970 0.86254 0.80196 0.79469 0.80337 1.18462 1.20025 1.18672 1.19735 0.98464 0.91312 1.37377 0.89741 1.17755 0.90547 0.92132 0.87417 1.20626 1.04124 0.92625 1.07447 1.20181 0.93431 0.96969 0.95665 1.17432 1.03658 0.88653 1.14084 1.18842 0.90952 0.95711 0.94623 1.17218 0.91296 0.86851 0.95632 1.91618 1.80094 1.64422 1.71429 1.17081 0.81935 0.95060 1.02690 1.91575 1.34203 1.94343 1.88755 1.16667 0.90448 0.85660 1.03158 1.91567 1.81404 1.45809 1.89966 1.17055 0.90449 0.89407 0.99876 1.91568 1.80689 1.64146 1.72510 1.17177 0.81965 0.93065 0.98924 1.91600 1.33931 1.94238 1.88009 1.20319 0.97573 0.91680 0.98059 1.20950 0.99766 0.96799 1.01498 0.90124 0.88314 0.89083 0.89140 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.28 10.96 55.55 0.61 -17.67 16 2 C 0.07 1.68 5.13 -17.33 -0.09 1.59 16 3 Si 0.91 16.98 29.60 -169.99 -5.03 11.95 16 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 5 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 7 C -0.44 -10.68 9.03 -37.89 -0.34 -11.02 16 8 H 0.08 1.94 7.91 -52.49 -0.42 1.52 16 9 C 0.12 3.06 5.57 -106.79 -0.60 2.46 16 10 C -0.23 -5.17 9.73 -39.29 -0.38 -5.56 16 11 C -0.04 -0.92 9.48 -39.65 -0.38 -1.30 16 12 C -0.24 -4.85 4.73 -104.64 -0.49 -5.35 16 13 C 0.00 0.02 5.31 -104.75 -0.56 -0.54 16 14 C 0.11 1.79 7.25 -38.96 -0.28 1.51 16 15 F -0.10 -1.74 16.59 2.25 0.04 -1.70 16 16 C 0.05 0.78 7.30 -39.38 -0.29 0.49 16 17 F -0.11 -1.60 17.08 2.25 0.04 -1.56 16 18 C 0.06 0.86 7.31 -39.20 -0.29 0.57 16 19 F -0.11 -1.48 17.08 2.25 0.04 -1.44 16 20 C 0.05 0.76 7.30 -39.38 -0.29 0.48 16 21 F -0.11 -1.57 17.08 2.25 0.04 -1.53 16 22 C 0.11 1.73 7.24 -38.96 -0.28 1.45 16 23 F -0.10 -1.68 16.58 2.25 0.04 -1.64 16 24 C -0.06 -1.26 9.50 -39.64 -0.38 -1.63 16 25 C -0.17 -4.10 8.63 -39.28 -0.34 -4.44 16 26 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 27 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 28 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 30 H 0.12 2.99 6.16 -52.49 -0.32 2.66 16 LS Contribution 296.34 15.07 4.47 4.47 Total: -1.00 -23.66 296.34 -5.88 -29.55 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -1.14 Total: 0.86 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -4.98 Total: -21.28 kcal Atomic # 7 Polarization: -18.28 SS G_CDS: 0.61 Total: -17.67 kcal Atomic # 9 Polarization: -8.07 SS G_CDS: 0.19 Total: -7.88 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -23.66 -5.88 -29.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016948232.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.166 kcal (2) G-P(sol) polarization free energy of solvation -23.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds