Wall clock time and date at job start Tue Mar 31 2020 10:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.46836 * 2 1 4 4 C 1.46503 * 119.99706 * 90.94074 * 3 2 1 5 5 C 1.50707 * 109.46904 * 89.99793 * 4 3 2 6 6 H 1.07998 * 120.00213 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99622 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00024 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99797 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46874 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47011 * 119.99872 * 9 7 5 12 12 H 1.48503 * 109.46987 * 239.99916 * 9 7 5 13 13 C 1.34770 * 120.00076 * 270.94030 * 3 2 1 14 14 O 1.21700 * 119.99728 * 184.98142 * 13 3 2 15 15 C 1.46665 * 120.00413 * 4.98329 * 13 3 2 16 16 C 1.37887 * 126.22367 * 8.26385 * 15 13 3 17 17 C 1.39881 * 107.09502 * 180.02562 * 16 15 13 18 18 Br 1.89093 * 126.07635 * 180.02562 * 17 16 15 19 19 C 1.35505 * 107.84975 * 359.97438 * 17 16 15 20 20 N 1.35602 * 108.86022 * 359.73238 * 19 17 16 21 21 C 1.46501 * 125.67988 * 180.28444 * 20 19 17 22 22 H 1.08998 * 109.47454 * 292.93564 * 1 2 3 23 23 H 1.08998 * 109.47144 * 52.94004 * 1 2 3 24 24 H 1.09004 * 109.46842 * 172.93805 * 1 2 3 25 25 H 1.09001 * 109.47424 * 240.00275 * 2 1 3 26 26 H 1.08995 * 109.47497 * 120.00080 * 2 1 3 27 27 H 1.08990 * 109.47441 * 210.00032 * 4 3 2 28 28 H 1.09001 * 109.46923 * 330.00111 * 4 3 2 29 29 H 0.96998 * 119.99256 * 179.97438 * 8 7 5 30 30 H 1.07999 * 126.45142 * 0.02562 * 16 15 13 31 31 H 1.07998 * 125.57412 * 180.02562 * 19 17 16 32 32 H 1.08997 * 109.47298 * 264.47732 * 21 20 19 33 33 H 1.09002 * 109.46931 * 24.48129 * 21 20 19 34 34 H 1.09005 * 109.46503 * 144.48023 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2820 2.0649 1.2686 5 6 3.7119 1.8258 1.6803 6 1 4.3595 1.2251 1.0589 7 6 4.1933 2.3739 2.8503 8 7 3.4045 3.1051 3.6072 9 14 5.9658 2.0781 3.3602 10 1 6.6378 1.2285 2.3444 11 1 6.6743 3.3790 3.4653 12 1 5.9941 1.3912 4.6765 13 6 2.2248 2.0230 -1.1670 14 8 2.7155 3.1367 -1.1704 15 6 1.8582 1.3793 -2.4328 16 6 1.1548 0.2019 -2.5744 17 6 1.0309 -0.0406 -3.9465 18 35 0.1576 -1.5172 -4.7419 19 6 1.6468 0.9713 -4.6044 20 7 2.1482 1.8439 -3.6956 21 6 2.8804 3.0743 -4.0060 22 1 -0.3634 0.4005 0.9464 23 1 -0.3633 0.6193 -0.8201 24 1 -0.3633 -1.0199 -0.1263 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.1131 3.1347 1.1469 28 1 1.6130 1.6765 2.0366 29 1 3.7431 3.4903 4.4305 30 1 0.7717 -0.4167 -1.7763 31 1 1.7218 1.0695 -5.6773 32 1 3.9520 2.8778 -3.9724 33 1 2.6053 3.4191 -5.0028 34 1 2.6285 3.8415 -3.2737 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037846329.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:54 Heat of formation + Delta-G solvation = 19.941238 kcal Electronic energy + Delta-G solvation = -18737.351880 eV Core-core repulsion = 15717.800293 eV Total energy + Delta-G solvation = -3019.551587 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.62613 -40.14001 -37.34406 -35.10284 -34.09897 -32.30481 -31.52982 -30.26446 -28.77277 -27.13033 -25.31372 -24.45184 -22.49345 -21.49130 -20.00045 -18.67061 -18.14422 -17.32142 -16.95281 -16.66608 -16.11167 -15.61402 -15.56635 -14.75793 -14.30936 -14.29622 -14.20800 -13.64397 -13.57784 -13.33991 -13.21407 -13.06059 -12.74107 -12.68136 -12.45800 -12.21955 -11.85830 -11.75660 -11.70616 -11.18041 -10.74321 -10.65494 -9.63268 -9.58643 -9.18468 -8.23473 -6.37984 0.44013 0.78216 1.36056 1.37728 1.41813 1.49933 1.71765 2.30033 2.40044 2.51537 3.06142 3.57793 3.89996 4.00488 4.08352 4.23304 4.34563 4.35406 4.57947 4.59195 4.70886 4.78030 4.92027 5.01064 5.03244 5.17380 5.37955 5.47047 5.55771 5.71660 5.82181 6.03918 6.10290 6.64926 6.71571 7.22810 7.38104 8.83776 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.023744 B = 0.003921 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.944847 B = 7139.577529 C = 7680.696127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.080 3.920 3 N -0.586 5.586 4 C 0.266 3.734 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.268 1.268 13 C 0.565 3.435 14 O -0.595 6.595 15 C -0.062 4.062 16 C -0.132 4.132 17 C -0.197 4.197 18 Br -0.016 7.016 19 C 0.068 3.932 20 N -0.409 5.409 21 C 0.066 3.934 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.000 1.000 28 H 0.029 0.971 29 H 0.268 0.732 30 H 0.190 0.810 31 H 0.215 0.785 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.357 -10.420 -19.790 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.042 4.042 3 N -0.315 5.315 4 C 0.145 3.855 5 C -0.580 4.580 6 H 0.068 0.932 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.193 1.193 13 C 0.355 3.645 14 O -0.478 6.478 15 C -0.176 4.176 16 C -0.159 4.159 17 C -0.282 4.282 18 Br 0.068 6.932 19 C -0.072 4.072 20 N -0.082 5.082 21 C -0.075 4.075 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.097 0.903 27 H 0.018 0.982 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.207 0.793 31 H 0.232 0.768 32 H 0.097 0.903 33 H 0.147 0.853 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.231 -9.946 -19.911 23.402 hybrid contribution 1.113 0.731 0.986 1.657 sum -6.118 -9.215 -18.924 21.920 Atomic orbital electron populations 1.22325 0.94145 1.04122 1.02264 1.22383 0.95648 0.81664 1.04515 1.47933 1.63077 1.14825 1.05687 1.18793 0.95505 0.91584 0.79637 1.21681 0.97449 1.32328 1.06535 0.93185 1.25814 1.02434 0.94408 0.96191 1.70052 1.37732 1.34451 1.14412 0.85374 0.79059 0.78015 0.78385 1.19410 1.20626 1.19289 1.17449 0.78498 0.84897 0.83610 1.90714 1.47306 1.22014 1.87788 1.20013 1.12319 0.99779 0.85496 1.22614 1.00687 0.95697 0.96876 1.21130 1.12809 0.99511 0.94772 1.96576 1.77355 1.38301 1.81009 1.22474 0.98619 0.89426 0.96671 1.44139 1.40405 1.19338 1.04281 1.22418 0.96873 0.83616 1.04560 0.92943 0.92236 0.87734 0.87707 0.90264 0.98181 0.95273 0.92332 0.79311 0.76802 0.90333 0.85296 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.54 8.56 71.98 0.62 -3.92 16 2 C 0.08 2.64 5.58 86.38 0.48 3.12 16 3 N -0.59 -26.15 2.46 -830.88 -2.04 -28.19 16 4 C 0.27 14.55 5.12 85.63 0.44 14.99 16 5 C -0.54 -31.65 9.39 25.60 0.24 -31.41 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.62 5.46 84.65 0.46 1.08 16 8 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 9 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 C 0.57 25.32 7.62 86.44 0.66 25.98 16 14 O -0.59 -31.20 14.41 -4.35 -0.06 -31.26 16 15 C -0.06 -2.15 6.72 40.35 0.27 -1.88 16 16 C -0.13 -3.72 7.48 22.58 0.17 -3.55 16 17 C -0.20 -4.63 6.53 22.04 0.14 -4.49 16 18 Br -0.02 -0.31 34.08 -20.37 -0.69 -1.00 16 19 C 0.07 1.43 11.33 83.48 0.95 2.38 16 20 N -0.41 -11.32 3.16 -534.20 -1.69 -13.01 16 21 C 0.07 1.55 10.52 127.77 1.34 2.90 16 22 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.06 1.63 6.60 -2.39 -0.02 1.62 16 24 H 0.10 1.97 8.12 -2.38 -0.02 1.95 16 25 H 0.11 3.08 4.80 -2.39 -0.01 3.06 16 26 H 0.08 2.69 8.06 -2.39 -0.02 2.67 16 27 H 0.00 0.00 7.49 -2.39 -0.02 -0.01 16 28 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 29 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.19 4.79 3.16 -2.91 -0.01 4.78 16 31 H 0.22 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.13 1.76 8.12 -2.39 -0.02 1.74 16 34 H 0.08 2.33 6.50 -2.38 -0.02 2.31 16 Total: -1.00 -73.57 303.97 4.71 -68.86 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.12 Total: 7.89 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 5.77 Total: 5.21 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -3.45 Total: -96.94 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.06 Total: -31.26 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -0.69 Total: -1.00 kcal Total: -73.57 4.71 -68.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037846329.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.799 kcal (2) G-P(sol) polarization free energy of solvation -73.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds