Wall clock time and date at job start Tue Mar 31 2020 10:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38878 * 123.64797 * 47.63691 * 3 2 1 5 5 C 1.33288 * 115.05066 * 179.97438 * 4 3 2 6 6 S 1.70515 * 111.43793 * 0.02562 * 5 4 3 7 7 C 1.38166 * 123.64614 * 227.34192 * 3 2 1 8 8 C 1.46681 * 125.50100 * 359.96653 * 7 3 2 9 9 O 1.21697 * 120.00134 * 359.97438 * 8 7 3 10 10 N 1.34781 * 119.99895 * 180.02562 * 8 7 3 11 11 C 1.39865 * 119.99897 * 175.49771 * 10 8 7 12 12 C 1.38953 * 120.00414 * 214.85802 * 11 10 8 13 13 C 1.37995 * 119.99419 * 179.78619 * 12 11 10 14 14 C 1.38912 * 120.00748 * 0.47131 * 13 12 11 15 15 O 1.35774 * 119.99818 * 179.76251 * 14 13 12 16 16 C 1.34806 * 117.00216 * 185.36251 * 15 14 13 17 17 H 1.08002 * 119.99659 * 354.96763 * 16 15 14 18 18 C 1.38629 * 120.00146 * 174.96328 * 16 15 14 19 19 N 1.31573 * 120.00072 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99991 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47426 * 90.00118 * 20 18 16 22 22 H 1.48500 * 109.47388 * 209.99671 * 20 18 16 23 23 H 1.48496 * 109.47244 * 329.99758 * 20 18 16 24 24 C 1.38919 * 120.00535 * 359.78304 * 14 13 12 25 25 C 1.37990 * 120.00760 * 359.97438 * 24 14 13 26 26 H 1.07996 * 122.47148 * 359.97438 * 4 3 2 27 27 H 1.08008 * 124.27922 * 179.97438 * 5 4 3 28 28 H 0.96999 * 119.99961 * 355.49277 * 10 8 7 29 29 H 1.08001 * 120.00105 * 0.02562 * 12 11 10 30 30 H 1.08006 * 119.99468 * 180.20769 * 13 12 11 31 31 H 0.97000 * 120.00230 * 180.02562 * 19 18 16 32 32 H 1.08000 * 119.99203 * 179.97438 * 24 14 13 33 33 H 1.08000 * 120.00289 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3379 -0.7780 -0.8542 5 6 4.6557 -0.6428 -0.7074 6 16 5.0342 0.4775 0.5211 7 6 3.3332 0.7804 0.8459 8 6 2.8106 1.7095 1.8534 9 8 1.6091 1.8409 1.9950 10 7 3.6612 2.4185 2.6218 11 6 3.1658 3.3727 3.5164 12 6 3.8829 4.5385 3.7563 13 6 3.3917 5.4819 4.6356 14 6 2.1854 5.2617 5.2883 15 8 1.7048 6.1878 6.1571 16 6 0.5881 5.8651 6.8398 17 1 0.0718 4.9412 6.6248 18 6 0.1025 6.7191 7.8179 19 7 -0.9871 6.4039 8.4846 20 14 0.9952 8.3174 8.1894 21 1 0.4538 9.3987 7.3274 22 1 0.7957 8.6757 9.6166 23 1 2.4456 8.1486 7.9194 24 6 1.4710 4.0939 5.0526 25 6 1.9593 3.1525 4.1696 26 1 2.9010 -1.4439 -1.5836 27 1 5.3908 -1.1760 -1.2920 28 1 4.6169 2.2669 2.5545 29 1 4.8226 4.7081 3.2517 30 1 3.9474 6.3896 4.8195 31 1 -1.3271 7.0016 9.1688 32 1 0.5334 3.9227 5.5605 33 1 1.4040 2.2444 3.9867 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052028939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:10 Heat of formation + Delta-G solvation = 42.483654 kcal Electronic energy + Delta-G solvation = -21541.040526 eV Core-core repulsion = 18046.246763 eV Total energy + Delta-G solvation = -3494.793763 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.051 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.48611 -39.15194 -38.39928 -36.64156 -36.06695 -34.22234 -32.36852 -30.81907 -30.32315 -28.42900 -26.32397 -25.07846 -22.85408 -22.07678 -21.54240 -20.72626 -19.18245 -17.95316 -17.70331 -17.30075 -16.42198 -16.13061 -15.48172 -15.04705 -14.67114 -14.30230 -14.11428 -13.97061 -13.81399 -13.77177 -13.63483 -12.99195 -12.84240 -12.75404 -12.48357 -12.34938 -12.31096 -11.83310 -11.73229 -11.61118 -10.99422 -10.79099 -10.32375 -10.04940 -9.79391 -9.45977 -9.31373 -9.15262 -8.80645 -8.34581 -7.14435 -6.43141 -4.09120 -0.26605 0.76422 1.20615 1.46633 1.96782 2.07547 2.64867 2.79580 2.95203 3.21872 3.24696 3.37742 3.38467 3.72489 4.21857 4.33971 4.45973 4.61842 4.64689 4.80224 5.08430 5.20999 5.46092 5.48633 5.53059 5.60066 5.94428 6.03293 6.16383 6.50254 6.69348 6.81045 7.00149 7.25200 7.40272 7.41316 7.52714 7.76465 7.98165 8.06534 8.91257 9.51923 10.64252 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.027466 B = 0.002790 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.184510 B =10034.289187 C =10900.985896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C 0.266 3.734 3 C 0.034 3.966 4 C -0.113 4.113 5 C -0.234 4.234 6 S 0.262 5.738 7 C -0.217 4.217 8 C 0.572 3.428 9 O -0.498 6.498 10 N -0.649 5.649 11 C 0.037 3.963 12 C -0.091 4.091 13 C -0.177 4.177 14 C 0.155 3.845 15 O -0.213 6.213 16 C -0.389 4.389 17 H 0.108 0.892 18 C 0.063 3.937 19 N -0.877 5.877 20 Si 0.907 3.093 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.207 4.207 25 C -0.062 4.062 26 H 0.156 0.844 27 H 0.180 0.820 28 H 0.400 0.600 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.280 0.720 32 H 0.138 0.862 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.957 -13.297 -17.460 28.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.061 5.061 2 C -0.052 4.052 3 C 0.015 3.985 4 C -0.144 4.144 5 C -0.371 4.371 6 S 0.530 5.470 7 C -0.342 4.342 8 C 0.358 3.642 9 O -0.373 6.373 10 N -0.294 5.294 11 C -0.055 4.055 12 C -0.111 4.111 13 C -0.197 4.197 14 C 0.102 3.898 15 O -0.118 6.118 16 C -0.465 4.465 17 H 0.125 0.875 18 C -0.140 4.140 19 N -0.514 5.514 20 Si 0.732 3.268 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.227 4.227 25 C -0.082 4.082 26 H 0.174 0.826 27 H 0.198 0.802 28 H 0.235 0.765 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.649 -12.377 -16.540 26.532 hybrid contribution -0.211 -0.137 -0.514 0.572 sum 16.437 -12.515 -17.054 26.789 Atomic orbital electron populations 1.81214 1.11599 1.06655 1.06676 1.24608 0.91533 0.94559 0.94496 1.15307 0.86271 0.98910 0.97997 1.19815 0.92243 1.01398 1.00942 1.25115 1.00389 1.06160 1.05470 1.83112 1.01045 1.34428 1.28428 1.25131 0.98419 1.05895 1.04788 1.16929 0.86581 0.80443 0.80291 1.90925 1.14216 1.64375 1.67784 1.42943 1.09335 1.38303 1.38778 1.17223 0.98601 0.91243 0.98444 1.20340 0.99667 0.91818 0.99244 1.19980 0.96155 1.01169 1.02416 1.19169 0.91952 0.88440 0.90256 1.83558 1.41589 1.38286 1.48372 1.20794 1.00017 1.09071 1.16608 0.87512 1.24483 0.95773 0.99194 0.94575 1.69657 1.20804 1.37887 1.23085 0.86162 0.81126 0.82060 0.77443 1.19853 1.20791 1.18291 1.21229 1.02944 0.95362 1.03146 1.20914 0.94557 0.99325 0.93436 0.82599 0.80236 0.76491 0.86366 0.85894 0.90972 0.84476 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.30 18.54 41.84 0.78 -5.53 16 2 C 0.27 3.62 13.90 -22.47 -0.31 3.31 16 3 C 0.03 0.34 5.74 -107.76 -0.62 -0.28 16 4 C -0.11 -0.67 9.99 -41.07 -0.41 -1.08 16 5 C -0.23 -0.93 10.87 29.00 0.32 -0.61 16 6 S 0.26 1.28 22.15 -107.50 -2.38 -1.10 16 7 C -0.22 -2.15 6.50 -36.20 -0.24 -2.39 16 8 C 0.57 7.98 7.62 -12.85 -0.10 7.88 16 9 O -0.50 -9.23 12.79 5.19 0.07 -9.16 16 10 N -0.65 -8.21 5.33 -11.01 -0.06 -8.27 16 11 C 0.04 0.61 6.30 -83.66 -0.53 0.09 16 12 C -0.09 -1.42 9.96 -39.41 -0.39 -1.81 16 13 C -0.18 -3.33 9.98 -39.42 -0.39 -3.73 16 14 C 0.15 3.53 6.65 -39.08 -0.26 3.27 16 15 O -0.21 -5.57 8.58 0.04 0.00 -5.57 16 16 C -0.39 -11.00 9.94 30.88 0.31 -10.69 16 17 H 0.11 3.11 5.43 -52.49 -0.28 2.82 16 18 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 19 N -0.88 -25.48 13.96 55.48 0.77 -24.71 16 20 Si 0.91 21.53 28.62 -169.99 -4.86 16.67 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.26 -6.10 7.11 56.52 0.40 -5.69 16 24 C -0.21 -4.61 9.16 -39.42 -0.36 -4.97 16 25 C -0.06 -1.23 8.68 -39.41 -0.34 -1.57 16 26 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 27 H 0.18 0.17 8.06 -52.48 -0.42 -0.26 16 28 H 0.40 3.43 7.95 -40.82 -0.32 3.11 16 29 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.12 2.10 8.06 -52.48 -0.42 1.67 16 31 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.14 3.25 5.63 -52.49 -0.30 2.95 16 33 H 0.13 2.55 6.22 -52.49 -0.33 2.23 16 LS Contribution 317.84 15.07 4.79 4.79 Total: -1.00 -34.32 317.84 -6.38 -40.70 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -2.06 Total: 3.09 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -3.43 Total: -10.91 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 1.49 Total: -38.51 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.07 Total: -14.74 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.86 Total: 16.67 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.38 Total: -1.10 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.32 -6.38 -40.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052028939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.183 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds