Wall clock time and date at job start Tue Mar 31 2020 10:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38878 * 123.64797 * 47.63691 * 3 2 1 5 5 C 1.33288 * 115.05066 * 179.97438 * 4 3 2 6 6 S 1.70515 * 111.43793 * 0.02562 * 5 4 3 7 7 C 1.38166 * 123.64614 * 227.34192 * 3 2 1 8 8 C 1.46681 * 125.50100 * 359.96653 * 7 3 2 9 9 O 1.21697 * 120.00134 * 359.97438 * 8 7 3 10 10 N 1.34781 * 119.99895 * 180.02562 * 8 7 3 11 11 C 1.39865 * 119.99897 * 175.49771 * 10 8 7 12 12 C 1.38953 * 120.00414 * 214.85802 * 11 10 8 13 13 C 1.37995 * 119.99419 * 179.78619 * 12 11 10 14 14 C 1.38912 * 120.00748 * 0.47131 * 13 12 11 15 15 O 1.35774 * 119.99818 * 179.76251 * 14 13 12 16 16 C 1.34806 * 117.00216 * 185.36251 * 15 14 13 17 17 H 1.08002 * 119.99659 * 354.96763 * 16 15 14 18 18 C 1.38629 * 120.00146 * 174.96328 * 16 15 14 19 19 N 1.31573 * 120.00072 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99991 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47426 * 90.00118 * 20 18 16 22 22 H 1.48500 * 109.47388 * 209.99671 * 20 18 16 23 23 H 1.48496 * 109.47244 * 329.99758 * 20 18 16 24 24 C 1.38919 * 120.00535 * 359.78304 * 14 13 12 25 25 C 1.37990 * 120.00760 * 359.97438 * 24 14 13 26 26 H 1.07996 * 122.47148 * 359.97438 * 4 3 2 27 27 H 1.08008 * 124.27922 * 179.97438 * 5 4 3 28 28 H 0.96999 * 119.99961 * 355.49277 * 10 8 7 29 29 H 1.08001 * 120.00105 * 0.02562 * 12 11 10 30 30 H 1.08006 * 119.99468 * 180.20769 * 13 12 11 31 31 H 0.97000 * 120.00230 * 180.02562 * 19 18 16 32 32 H 1.08000 * 119.99203 * 179.97438 * 24 14 13 33 33 H 1.08000 * 120.00289 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3379 -0.7780 -0.8542 5 6 4.6557 -0.6428 -0.7074 6 16 5.0342 0.4775 0.5211 7 6 3.3332 0.7804 0.8459 8 6 2.8106 1.7095 1.8534 9 8 1.6091 1.8409 1.9950 10 7 3.6612 2.4185 2.6218 11 6 3.1658 3.3727 3.5164 12 6 3.8829 4.5385 3.7563 13 6 3.3917 5.4819 4.6356 14 6 2.1854 5.2617 5.2883 15 8 1.7048 6.1878 6.1571 16 6 0.5881 5.8651 6.8398 17 1 0.0718 4.9412 6.6248 18 6 0.1025 6.7191 7.8179 19 7 -0.9871 6.4039 8.4846 20 14 0.9952 8.3174 8.1894 21 1 0.4538 9.3987 7.3274 22 1 0.7957 8.6757 9.6166 23 1 2.4456 8.1486 7.9194 24 6 1.4710 4.0939 5.0526 25 6 1.9593 3.1525 4.1696 26 1 2.9010 -1.4439 -1.5836 27 1 5.3908 -1.1760 -1.2920 28 1 4.6169 2.2669 2.5545 29 1 4.8226 4.7081 3.2517 30 1 3.9474 6.3896 4.8195 31 1 -1.3271 7.0016 9.1688 32 1 0.5334 3.9227 5.5605 33 1 1.4040 2.2444 3.9867 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052028939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:09 Heat of formation + Delta-G solvation = 18.204687 kcal Electronic energy + Delta-G solvation = -21542.093341 eV Core-core repulsion = 18046.246763 eV Total energy + Delta-G solvation = -3495.846578 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.051 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.71221 -40.61982 -39.37101 -38.15305 -37.07883 -35.59761 -34.41224 -31.96939 -31.54523 -29.77530 -27.54375 -26.69356 -24.23866 -23.40661 -22.23224 -22.05134 -20.40342 -19.59415 -19.16290 -18.58915 -17.51249 -17.10721 -16.75363 -16.24436 -15.80031 -15.70697 -15.65691 -15.49858 -15.06243 -14.99665 -14.50784 -14.44471 -14.22688 -14.11488 -13.88127 -13.58396 -13.42407 -13.32300 -13.08530 -12.76550 -12.50512 -12.10496 -12.02705 -11.55946 -11.38748 -11.03516 -10.71737 -10.05653 -9.90279 -9.60270 -8.74556 -8.51210 -6.24478 -0.97099 0.21550 0.45154 0.48909 0.75371 0.93592 1.32374 1.37535 1.53437 1.65319 1.69841 1.86762 2.28213 2.43325 2.73758 2.92754 3.00214 3.13816 3.56900 3.98542 4.04466 4.06656 4.29151 4.42153 4.56222 4.62844 4.76909 4.97711 5.05183 5.07814 5.16862 5.32057 5.41195 5.54597 5.72283 5.86521 6.14337 6.30249 6.41093 6.81955 6.97893 7.53524 8.60798 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.027466 B = 0.002790 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.184510 B =10034.289187 C =10900.985896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.283 3.717 3 C 0.019 3.981 4 C -0.122 4.122 5 C -0.207 4.207 6 S 0.363 5.637 7 C -0.264 4.264 8 C 0.571 3.429 9 O -0.556 6.556 10 N -0.637 5.637 11 C 0.067 3.933 12 C -0.070 4.070 13 C -0.165 4.165 14 C 0.116 3.884 15 O -0.237 6.237 16 C -0.402 4.402 17 H 0.073 0.927 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.978 3.022 21 H -0.266 1.266 22 H -0.268 1.268 23 H -0.254 1.254 24 C -0.226 4.226 25 C -0.080 4.080 26 H 0.175 0.825 27 H 0.224 0.776 28 H 0.426 0.574 29 H 0.182 0.818 30 H 0.150 0.850 31 H 0.285 0.715 32 H 0.102 0.898 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.275 -13.787 -20.440 34.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.033 4.033 3 C -0.003 4.003 4 C -0.151 4.151 5 C -0.345 4.345 6 S 0.632 5.368 7 C -0.388 4.388 8 C 0.360 3.640 9 O -0.435 6.435 10 N -0.283 5.283 11 C -0.027 4.027 12 C -0.090 4.090 13 C -0.184 4.184 14 C 0.067 3.933 15 O -0.144 6.144 16 C -0.478 4.478 17 H 0.090 0.910 18 C -0.191 4.191 19 N -0.567 5.567 20 Si 0.800 3.200 21 H -0.191 1.191 22 H -0.193 1.193 23 H -0.177 1.177 24 C -0.246 4.246 25 C -0.101 4.101 26 H 0.192 0.808 27 H 0.241 0.759 28 H 0.266 0.734 29 H 0.199 0.801 30 H 0.168 0.832 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 23.053 -12.918 -19.571 32.884 hybrid contribution -1.860 -0.337 0.059 1.891 sum 21.194 -13.256 -19.512 31.711 Atomic orbital electron populations 1.81199 1.13769 1.09135 1.09120 1.25444 0.92673 0.92650 0.92575 1.15659 0.84353 1.00579 0.99685 1.19914 0.92733 1.01535 1.00958 1.25720 1.00237 1.04399 1.04147 1.82805 0.95274 1.32214 1.26495 1.24810 1.02363 1.06691 1.04977 1.17537 0.85885 0.80157 0.80431 1.90918 1.16925 1.66133 1.69519 1.42795 1.10648 1.37260 1.37627 1.17357 0.96688 0.92069 0.96560 1.20907 1.01090 0.89554 0.97415 1.20444 0.94154 1.02652 1.01163 1.19725 0.93942 0.88522 0.91155 1.83496 1.41215 1.39511 1.50179 1.20665 1.01159 1.08372 1.17621 0.90970 1.25397 0.96608 1.02902 0.94238 1.69759 1.22762 1.39732 1.24495 0.85109 0.79795 0.77269 0.77870 1.19129 1.19288 1.17734 1.21095 1.02325 0.96837 1.04378 1.20878 0.96509 0.98586 0.94084 0.80754 0.75899 0.73444 0.80109 0.83238 0.90509 0.88053 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.99 18.54 19.00 0.35 -15.64 16 2 C 0.28 8.01 13.90 88.33 1.23 9.24 16 3 C 0.02 0.34 5.74 -21.90 -0.13 0.21 16 4 C -0.12 -0.97 9.99 21.30 0.21 -0.76 16 5 C -0.21 -0.30 10.87 66.70 0.72 0.42 16 6 S 0.36 1.37 22.15 -56.49 -1.25 0.12 16 7 C -0.26 -4.52 6.50 24.46 0.16 -4.36 16 8 C 0.57 15.27 7.62 86.45 0.66 15.93 16 9 O -0.56 -21.49 12.79 -4.34 -0.06 -21.54 16 10 N -0.64 -14.11 5.33 -306.95 -1.64 -15.74 16 11 C 0.07 2.08 6.30 38.20 0.24 2.32 16 12 C -0.07 -1.89 9.96 22.38 0.22 -1.66 16 13 C -0.16 -5.79 9.98 22.37 0.22 -5.57 16 14 C 0.12 5.48 6.65 22.59 0.15 5.63 16 15 O -0.24 -12.93 8.58 -22.76 -0.20 -13.13 16 16 C -0.40 -24.48 9.94 67.91 0.68 -23.80 16 17 H 0.07 4.73 5.43 -2.91 -0.02 4.72 16 18 C 0.01 0.39 5.49 84.82 0.47 0.86 16 19 N -0.93 -57.20 13.96 21.61 0.30 -56.89 16 20 Si 0.98 45.65 28.62 68.60 1.96 47.62 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 23 H -0.25 -11.45 7.11 99.48 0.71 -10.75 16 24 C -0.23 -10.93 9.16 22.37 0.20 -10.72 16 25 C -0.08 -3.32 8.68 22.38 0.19 -3.12 16 26 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 27 H 0.22 -1.48 8.06 -2.91 -0.02 -1.51 16 28 H 0.43 5.01 7.95 -92.71 -0.74 4.27 16 29 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 30 H 0.15 4.50 8.06 -2.91 -0.02 4.48 16 31 H 0.29 16.06 8.31 -92.71 -0.77 15.29 16 32 H 0.10 5.52 5.63 -2.91 -0.02 5.50 16 33 H 0.12 5.01 6.22 -2.91 -0.02 4.99 16 Total: -1.00 -87.65 317.84 5.18 -82.46 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.47 Total: 8.14 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 5.23 Total: -15.38 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -0.98 Total: -88.28 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.25 Total: -34.67 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.96 Total: 47.62 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -1.25 Total: 0.12 kcal Total: -87.65 5.18 -82.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052028939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.668 kcal (2) G-P(sol) polarization free energy of solvation -87.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds