Wall clock time and date at job start Tue Mar 31 2020 10:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38868 * 123.64540 * 140.78367 * 3 2 1 5 5 C 1.33297 * 115.05332 * 180.31688 * 4 3 2 6 6 S 1.70524 * 111.43328 * 359.72455 * 5 4 3 7 7 C 1.38166 * 123.64671 * 320.59185 * 3 2 1 8 8 C 1.46680 * 125.49973 * 359.97269 * 7 3 2 9 9 O 1.21688 * 120.00069 * 359.72123 * 8 7 3 10 10 N 1.34782 * 119.99787 * 179.72151 * 8 7 3 11 11 C 1.39810 * 119.99724 * 175.50428 * 10 8 7 12 12 C 1.38995 * 120.03545 * 215.15963 * 11 10 8 13 13 C 1.38151 * 120.06429 * 179.97438 * 12 11 10 14 14 C 1.38179 * 120.13614 * 359.71829 * 13 12 11 15 15 C 1.38911 * 120.07894 * 0.55740 * 14 13 12 16 16 O 1.35751 * 120.03426 * 179.71955 * 15 14 13 17 17 C 1.34831 * 116.99633 * 354.35112 * 16 15 14 18 18 H 1.07994 * 120.00599 * 5.02186 * 17 16 15 19 19 C 1.38657 * 119.99730 * 185.02443 * 17 16 15 20 20 N 1.31552 * 120.00445 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99867 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46956 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46743 * 120.00177 * 21 19 17 24 24 H 1.48501 * 109.47124 * 239.99918 * 21 19 17 25 25 C 1.38740 * 120.04172 * 35.14178 * 11 10 8 26 26 H 1.07997 * 122.47547 * 0.02562 * 4 3 2 27 27 H 1.08000 * 124.28596 * 179.74515 * 5 4 3 28 28 H 0.97005 * 119.99738 * 355.50329 * 10 8 7 29 29 H 1.08002 * 119.96731 * 359.95309 * 12 11 10 30 30 H 1.07997 * 119.93319 * 180.02562 * 13 12 11 31 31 H 1.08002 * 119.96164 * 180.30259 * 14 13 12 32 32 H 0.96996 * 120.00592 * 180.02562 * 20 19 17 33 33 H 1.08007 * 120.06867 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3370 0.8967 -0.7309 5 6 4.6550 0.7387 -0.6102 6 16 5.0346 -0.5487 0.4416 7 6 3.3339 -0.8877 0.7302 8 6 2.8122 -1.9467 1.6008 9 8 1.6109 -2.0931 1.7280 10 7 3.6635 -2.7575 2.2600 11 6 3.1696 -3.7049 3.1617 12 6 3.8872 -4.0107 4.3121 13 6 3.3994 -4.9464 5.2039 14 6 2.1945 -5.5767 4.9582 15 6 1.4754 -5.2797 3.8075 16 8 0.2945 -5.9036 3.5643 17 6 -0.0669 -6.8837 4.4168 18 1 0.5319 -7.0857 5.2926 19 6 -1.2075 -7.6322 4.1692 20 7 -1.9373 -7.3860 3.1028 21 14 -1.7078 -8.9905 5.3501 22 1 -0.7268 -9.0658 6.4622 23 1 -3.0567 -8.6980 5.8980 24 1 -1.7375 -10.2879 4.6282 25 6 1.9624 -4.3406 2.9095 26 1 2.8995 1.6618 -1.3550 27 1 5.3896 1.3491 -1.1144 28 1 4.6188 -2.6837 2.1086 29 1 4.8272 -3.5166 4.5089 30 1 3.9585 -5.1821 6.0973 31 1 1.8135 -6.3041 5.6597 32 1 -2.7353 -7.9094 2.9297 33 1 1.4025 -4.1043 2.0167 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052031403.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:31 Heat of formation + Delta-G solvation = 41.951423 kcal Electronic energy + Delta-G solvation = -21751.385994 eV Core-core repulsion = 18256.569152 eV Total energy + Delta-G solvation = -3494.816842 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.051 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.43786 -38.99302 -38.23212 -36.50220 -35.96552 -34.25019 -32.25168 -30.87472 -29.44768 -28.54531 -26.26063 -25.26375 -22.88935 -21.74736 -21.44123 -20.89815 -19.00317 -18.31895 -17.33127 -17.04439 -16.08615 -15.53972 -15.37147 -15.08657 -14.95700 -14.34562 -14.27817 -14.04965 -13.70786 -13.57951 -13.52286 -12.89897 -12.88364 -12.65420 -12.55178 -12.26704 -11.75782 -11.61224 -11.52176 -11.25682 -11.03433 -10.83139 -10.43722 -10.03259 -9.85003 -9.39644 -9.23451 -9.08165 -8.82477 -7.77452 -7.21782 -6.41609 -4.01053 -0.19590 0.82742 1.26849 1.54044 2.01136 2.31570 2.75351 2.86941 2.97207 3.15276 3.15680 3.21662 3.47529 3.81085 3.98279 4.39788 4.56775 4.68749 4.70260 5.12315 5.26444 5.32300 5.53391 5.58698 5.61408 5.77838 6.03213 6.14994 6.34390 6.58813 6.78365 6.99161 7.05079 7.32843 7.43859 7.51552 7.52923 7.72644 8.02415 8.10320 9.02849 9.73679 10.76113 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.020344 B = 0.003207 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.968997 B = 8729.946381 C = 9898.771306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C 0.262 3.738 3 C 0.038 3.962 4 C -0.113 4.113 5 C -0.233 4.233 6 S 0.260 5.740 7 C -0.218 4.218 8 C 0.573 3.427 9 O -0.482 6.482 10 N -0.659 5.659 11 C 0.171 3.829 12 C -0.233 4.233 13 C -0.058 4.058 14 C -0.242 4.242 15 C 0.167 3.833 16 O -0.172 6.172 17 C -0.392 4.392 18 H 0.094 0.906 19 C 0.039 3.961 20 N -0.858 5.858 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.184 4.184 26 H 0.157 0.843 27 H 0.180 0.820 28 H 0.403 0.597 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.129 0.871 32 H 0.270 0.730 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.561 14.363 -5.506 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.056 5.056 2 C -0.056 4.056 3 C 0.019 3.981 4 C -0.144 4.144 5 C -0.371 4.371 6 S 0.529 5.471 7 C -0.343 4.343 8 C 0.358 3.642 9 O -0.355 6.355 10 N -0.303 5.303 11 C 0.079 3.921 12 C -0.254 4.254 13 C -0.077 4.077 14 C -0.262 4.262 15 C 0.112 3.888 16 O -0.075 6.075 17 C -0.469 4.469 18 H 0.111 0.889 19 C -0.166 4.166 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.206 4.206 26 H 0.174 0.826 27 H 0.198 0.802 28 H 0.239 0.761 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.146 0.854 32 H 0.080 0.920 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 17.931 13.612 -5.225 23.111 hybrid contribution -0.542 0.111 -0.033 0.554 sum 17.389 13.723 -5.258 22.768 Atomic orbital electron populations 1.81232 1.11563 1.06448 1.06386 1.24608 0.91531 0.94646 0.94803 1.15311 0.86306 0.97110 0.99399 1.19814 0.92236 1.00714 1.01617 1.25110 1.00368 1.05055 1.06534 1.83077 1.01066 1.24965 1.38033 1.25103 0.98428 1.03811 1.06974 1.16971 0.86615 0.80623 0.79972 1.90995 1.14075 1.69337 1.61103 1.43090 1.09643 1.35040 1.42574 1.17096 0.95086 0.90378 0.89577 1.20257 1.02749 1.06483 0.95890 1.20502 0.94930 0.94779 0.97448 1.21206 0.97838 1.06846 1.00332 1.19117 0.86194 0.91389 0.92143 1.84002 1.29017 1.44540 1.49915 1.21406 1.10178 1.10562 1.04715 0.88864 1.25326 0.95472 0.98370 0.97417 1.70063 1.15004 1.38964 1.25245 0.85634 0.78891 0.79569 0.79228 1.19047 1.20138 1.20139 1.20180 0.97849 1.00330 1.02200 0.82562 0.80234 0.76129 0.87207 0.86884 0.85357 0.92012 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -6.87 18.54 41.84 0.78 -6.10 16 2 C 0.26 3.97 13.90 -22.47 -0.31 3.66 16 3 C 0.04 0.42 5.74 -107.76 -0.62 -0.20 16 4 C -0.11 -0.78 9.99 -41.07 -0.41 -1.19 16 5 C -0.23 -1.10 10.87 29.01 0.32 -0.79 16 6 S 0.26 1.50 22.15 -107.50 -2.38 -0.88 16 7 C -0.22 -2.43 6.50 -36.20 -0.24 -2.67 16 8 C 0.57 8.97 7.62 -12.85 -0.10 8.87 16 9 O -0.48 -10.09 12.79 5.20 0.07 -10.03 16 10 N -0.66 -9.34 5.32 -11.06 -0.06 -9.40 16 11 C 0.17 3.15 6.29 -83.75 -0.53 2.62 16 12 C -0.23 -3.85 9.96 -39.33 -0.39 -4.24 16 13 C -0.06 -1.03 10.03 -39.64 -0.40 -1.43 16 14 C -0.24 -5.30 9.17 -39.35 -0.36 -5.67 16 15 C 0.17 4.21 6.64 -39.14 -0.26 3.95 16 16 O -0.17 -5.14 9.76 0.04 0.00 -5.14 16 17 C -0.39 -11.25 9.49 30.89 0.29 -10.96 16 18 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 19 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -26.06 13.67 55.48 0.76 -25.30 16 21 Si 0.94 20.94 29.55 -169.99 -5.02 15.91 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 C -0.18 -4.26 8.64 -39.20 -0.34 -4.60 16 26 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 27 H 0.18 0.28 8.06 -52.49 -0.42 -0.14 16 28 H 0.40 3.92 7.95 -40.82 -0.32 3.59 16 29 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.13 3.35 6.22 -52.48 -0.33 3.02 16 LS Contribution 318.98 15.07 4.81 4.81 Total: -1.00 -36.84 318.98 -6.54 -43.38 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -2.05 Total: 4.37 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -3.44 Total: -11.63 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 1.48 Total: -40.80 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.07 Total: -15.17 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.38 Total: -0.88 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -36.84 -6.54 -43.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052031403.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.333 kcal (2) G-P(sol) polarization free energy of solvation -36.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds