Wall clock time and date at job start Tue Mar 31 2020 10:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38868 * 123.64540 * 140.78367 * 3 2 1 5 5 C 1.33297 * 115.05332 * 180.31688 * 4 3 2 6 6 S 1.70524 * 111.43328 * 359.72455 * 5 4 3 7 7 C 1.38166 * 123.64671 * 320.59185 * 3 2 1 8 8 C 1.46680 * 125.49973 * 359.97269 * 7 3 2 9 9 O 1.21688 * 120.00069 * 359.72123 * 8 7 3 10 10 N 1.34782 * 119.99787 * 179.72151 * 8 7 3 11 11 C 1.39810 * 119.99724 * 175.50428 * 10 8 7 12 12 C 1.38995 * 120.03545 * 215.15963 * 11 10 8 13 13 C 1.38151 * 120.06429 * 179.97438 * 12 11 10 14 14 C 1.38179 * 120.13614 * 359.71829 * 13 12 11 15 15 C 1.38911 * 120.07894 * 0.55740 * 14 13 12 16 16 O 1.35751 * 120.03426 * 179.71955 * 15 14 13 17 17 C 1.34831 * 116.99633 * 354.35112 * 16 15 14 18 18 H 1.07994 * 120.00599 * 5.02186 * 17 16 15 19 19 C 1.38657 * 119.99730 * 185.02443 * 17 16 15 20 20 N 1.31552 * 120.00445 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99867 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46956 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46743 * 120.00177 * 21 19 17 24 24 H 1.48501 * 109.47124 * 239.99918 * 21 19 17 25 25 C 1.38740 * 120.04172 * 35.14178 * 11 10 8 26 26 H 1.07997 * 122.47547 * 0.02562 * 4 3 2 27 27 H 1.08000 * 124.28596 * 179.74515 * 5 4 3 28 28 H 0.97005 * 119.99738 * 355.50329 * 10 8 7 29 29 H 1.08002 * 119.96731 * 359.95309 * 12 11 10 30 30 H 1.07997 * 119.93319 * 180.02562 * 13 12 11 31 31 H 1.08002 * 119.96164 * 180.30259 * 14 13 12 32 32 H 0.96996 * 120.00592 * 180.02562 * 20 19 17 33 33 H 1.08007 * 120.06867 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3370 0.8967 -0.7309 5 6 4.6550 0.7387 -0.6102 6 16 5.0346 -0.5487 0.4416 7 6 3.3339 -0.8877 0.7302 8 6 2.8122 -1.9467 1.6008 9 8 1.6109 -2.0931 1.7280 10 7 3.6635 -2.7575 2.2600 11 6 3.1696 -3.7049 3.1617 12 6 3.8872 -4.0107 4.3121 13 6 3.3994 -4.9464 5.2039 14 6 2.1945 -5.5767 4.9582 15 6 1.4754 -5.2797 3.8075 16 8 0.2945 -5.9036 3.5643 17 6 -0.0669 -6.8837 4.4168 18 1 0.5319 -7.0857 5.2926 19 6 -1.2075 -7.6322 4.1692 20 7 -1.9373 -7.3860 3.1028 21 14 -1.7078 -8.9905 5.3501 22 1 -0.7268 -9.0658 6.4622 23 1 -3.0567 -8.6980 5.8980 24 1 -1.7375 -10.2879 4.6282 25 6 1.9624 -4.3406 2.9095 26 1 2.8995 1.6618 -1.3550 27 1 5.3896 1.3491 -1.1144 28 1 4.6188 -2.6837 2.1086 29 1 4.8272 -3.5166 4.5089 30 1 3.9585 -5.1821 6.0973 31 1 1.8135 -6.3041 5.6597 32 1 -2.7353 -7.9094 2.9297 33 1 1.4025 -4.1043 2.0167 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052031403.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:30 Heat of formation + Delta-G solvation = 14.243369 kcal Electronic energy + Delta-G solvation = -21752.587506 eV Core-core repulsion = 18256.569152 eV Total energy + Delta-G solvation = -3496.018353 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.051 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75495 -40.50309 -39.35362 -38.13842 -37.11069 -35.71783 -34.29359 -31.89509 -30.97837 -29.96354 -27.49253 -27.04658 -24.21241 -23.24786 -22.30705 -22.25537 -20.23226 -19.91387 -18.94773 -18.17619 -17.11050 -16.97246 -16.80893 -16.66674 -15.98119 -15.91997 -15.59518 -15.52716 -15.16168 -14.97603 -14.51881 -14.44814 -14.27392 -13.90640 -13.63262 -13.56264 -13.24733 -13.15210 -12.96751 -12.72975 -12.40256 -12.12192 -12.10031 -11.57828 -11.43499 -10.97299 -10.80510 -10.09424 -9.62318 -9.39660 -8.92348 -8.48900 -6.19114 -1.00688 0.18269 0.41377 0.68192 0.73194 0.91975 1.32477 1.42161 1.52919 1.62911 1.67086 1.77966 2.16611 2.40613 2.80709 2.90309 3.12477 3.37946 3.67234 3.95781 4.12283 4.27577 4.34748 4.39063 4.61776 4.71239 4.74984 4.97374 5.04284 5.07072 5.08841 5.35004 5.38349 5.61019 5.71578 6.00516 6.15660 6.24898 6.38792 6.92927 6.94768 7.77836 8.75399 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.020344 B = 0.003207 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.968997 B = 8729.946381 C = 9898.771306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.280 3.720 3 C 0.020 3.980 4 C -0.122 4.122 5 C -0.204 4.204 6 S 0.369 5.631 7 C -0.268 4.268 8 C 0.570 3.430 9 O -0.551 6.551 10 N -0.643 5.643 11 C 0.181 3.819 12 C -0.196 4.196 13 C -0.047 4.047 14 C -0.251 4.251 15 C 0.124 3.876 16 O -0.239 6.239 17 C -0.413 4.413 18 H 0.109 0.891 19 C -0.030 4.030 20 N -0.927 5.927 21 Si 1.026 2.974 22 H -0.244 1.244 23 H -0.271 1.271 24 H -0.267 1.267 25 C -0.214 4.214 26 H 0.177 0.823 27 H 0.228 0.772 28 H 0.429 0.571 29 H 0.172 0.828 30 H 0.165 0.835 31 H 0.124 0.876 32 H 0.272 0.728 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.097 16.079 -4.295 30.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.036 4.036 3 C -0.002 4.002 4 C -0.151 4.151 5 C -0.341 4.341 6 S 0.638 5.362 7 C -0.392 4.392 8 C 0.358 3.642 9 O -0.429 6.429 10 N -0.290 5.290 11 C 0.086 3.914 12 C -0.216 4.216 13 C -0.065 4.065 14 C -0.271 4.271 15 C 0.073 3.927 16 O -0.146 6.146 17 C -0.489 4.489 18 H 0.127 0.873 19 C -0.227 4.227 20 N -0.565 5.565 21 Si 0.844 3.156 22 H -0.167 1.167 23 H -0.196 1.196 24 H -0.192 1.192 25 C -0.236 4.236 26 H 0.194 0.806 27 H 0.244 0.756 28 H 0.270 0.730 29 H 0.190 0.810 30 H 0.182 0.818 31 H 0.142 0.858 32 H 0.081 0.919 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 24.604 15.377 -4.015 29.291 hybrid contribution -2.055 -0.103 -0.492 2.116 sum 22.549 15.274 -4.507 27.605 Atomic orbital electron populations 1.81208 1.13917 1.09087 1.09112 1.25522 0.92790 0.92547 0.92736 1.15706 0.84226 0.99007 1.01228 1.19909 0.92757 1.00611 1.01797 1.25752 1.00161 1.03892 1.04334 1.82715 0.94815 1.23108 1.35517 1.24789 1.02714 1.03605 1.08128 1.17674 0.85863 0.81088 0.79572 1.90986 1.17204 1.71313 1.63400 1.42935 1.10867 1.33589 1.41578 1.17252 0.93315 0.89837 0.90946 1.20952 1.03606 1.04038 0.93038 1.21083 0.93047 0.93277 0.99086 1.21367 0.99359 1.07465 0.98919 1.19685 0.86254 0.92392 0.94344 1.83971 1.32077 1.46646 1.51857 1.21989 1.10872 1.10789 1.05257 0.87341 1.26779 0.95105 1.01230 0.99537 1.70243 1.16306 1.41500 1.28468 0.84442 0.78765 0.75457 0.76915 1.16660 1.19621 1.19224 1.20196 1.00160 1.01788 1.01439 0.80589 0.75553 0.73042 0.81013 0.81750 0.85803 0.91935 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.29 18.54 19.00 0.35 -17.94 16 2 C 0.28 9.19 13.90 88.33 1.23 10.42 16 3 C 0.02 0.43 5.74 -21.90 -0.13 0.30 16 4 C -0.12 -1.26 9.99 21.30 0.21 -1.04 16 5 C -0.20 -0.66 10.87 66.70 0.72 0.06 16 6 S 0.37 2.20 22.15 -56.49 -1.25 0.94 16 7 C -0.27 -5.57 6.50 24.46 0.16 -5.41 16 8 C 0.57 18.14 7.62 86.45 0.66 18.80 16 9 O -0.55 -25.26 12.79 -4.31 -0.06 -25.31 16 10 N -0.64 -17.05 5.32 -307.13 -1.64 -18.69 16 11 C 0.18 6.44 6.29 38.17 0.24 6.68 16 12 C -0.20 -5.53 9.96 22.43 0.22 -5.31 16 13 C -0.05 -1.48 10.03 22.23 0.22 -1.25 16 14 C -0.25 -11.07 9.17 22.42 0.21 -10.86 16 15 C 0.12 6.74 6.64 22.56 0.15 6.89 16 16 O -0.24 -15.73 9.76 -22.77 -0.22 -15.96 16 17 C -0.41 -25.43 9.49 67.92 0.64 -24.78 16 18 H 0.11 5.98 5.20 -2.91 -0.02 5.96 16 19 C -0.03 -1.80 5.49 84.83 0.47 -1.33 16 20 N -0.93 -61.08 13.67 21.61 0.30 -60.78 16 21 Si 1.03 44.86 29.55 68.60 2.03 46.89 16 22 H -0.24 -9.58 7.11 99.48 0.71 -8.87 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 C -0.21 -10.63 8.64 22.52 0.19 -10.43 16 26 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 27 H 0.23 -1.24 8.06 -2.91 -0.02 -1.26 16 28 H 0.43 6.45 7.95 -92.70 -0.74 5.71 16 29 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 30 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.12 5.46 5.63 -2.91 -0.02 5.45 16 32 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 33 H 0.10 5.41 6.22 -2.91 -0.02 5.39 16 Total: -1.00 -99.02 318.98 5.18 -93.83 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.47 Total: 14.27 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 5.20 Total: -17.26 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -0.99 Total: -97.41 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -0.28 Total: -41.27 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.25 Total: 0.94 kcal Total: -99.02 5.18 -93.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052031403.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.077 kcal (2) G-P(sol) polarization free energy of solvation -99.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds