Wall clock time and date at job start Tue Mar 31 2020 10:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34901 * 117.00367 * 2 1 4 4 O 1.21623 * 119.99529 * 0.02562 * 3 2 1 5 5 C 1.46469 * 120.00300 * 179.97438 * 3 2 1 6 6 O 1.34939 * 125.99467 * 0.30814 * 5 3 2 7 7 C 1.33911 * 109.37781 * 180.16891 * 6 5 3 8 8 C 1.50697 * 125.60991 * 179.83013 * 7 6 5 9 9 O 1.45199 * 109.46937 * 269.69470 * 8 7 6 10 10 C 1.34234 * 116.99947 * 179.97438 * 9 8 7 11 11 O 1.20822 * 120.00090 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99997 * 179.72219 * 10 9 8 13 13 S 1.80998 * 109.47038 * 179.97438 * 12 10 9 14 14 C 1.76208 * 99.99785 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00106 * 0.02562 * 14 13 12 16 16 C 1.38796 * 119.99736 * 180.02562 * 14 13 12 17 17 N 1.31635 * 119.99774 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00141 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47351 * 90.00092 * 18 16 14 20 20 H 1.48504 * 109.47449 * 209.99909 * 18 16 14 21 21 H 1.48495 * 109.47396 * 329.99894 * 18 16 14 22 22 C 1.35173 * 108.78116 * 359.56492 * 7 6 5 23 23 C 1.36636 * 125.99634 * 179.97438 * 5 3 2 24 24 C 1.50706 * 126.64632 * 0.02562 * 23 5 3 25 25 H 1.08992 * 109.47129 * 59.99773 * 1 2 3 26 26 H 1.09001 * 109.47030 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47181 * 299.99976 * 1 2 3 28 28 H 1.08997 * 109.47315 * 149.69654 * 8 7 6 29 29 H 1.09002 * 109.47266 * 29.68855 * 8 7 6 30 30 H 1.09001 * 109.47201 * 300.00712 * 12 10 9 31 31 H 1.09001 * 109.46880 * 60.00295 * 12 10 9 32 32 H 0.96998 * 119.99494 * 180.02562 * 17 16 14 33 33 H 1.07997 * 126.43316 * 180.23991 * 22 7 6 34 34 H 1.08996 * 109.47062 * 270.02098 * 24 23 5 35 35 H 1.08994 * 109.47401 * 30.02669 * 24 23 5 36 36 H 1.09003 * 109.46745 * 150.02677 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4021 2.2219 0.0005 5 6 3.5272 1.2786 0.0006 6 8 4.3763 0.2298 -0.0048 7 6 5.6377 0.6794 0.0014 8 6 6.8755 -0.1801 0.0020 9 8 7.2725 -0.4560 1.3712 10 6 8.3652 -1.2154 1.5476 11 8 8.9702 -1.6353 0.5897 12 6 8.8414 -1.5385 2.9404 13 16 10.3243 -2.5720 2.8464 14 6 10.6535 -2.7917 4.5635 15 1 10.0068 -2.3376 5.2997 16 6 11.7439 -3.5483 4.9698 17 7 11.9895 -3.7128 6.2525 18 14 12.8628 -4.3330 3.6964 19 1 13.9589 -3.3918 3.3532 20 1 13.4401 -5.5848 4.2489 21 1 12.0790 -4.6466 2.4747 22 6 5.6180 2.0309 0.0012 23 6 4.2713 2.4245 0.0001 24 6 3.7470 3.8375 -0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 7.6817 0.3436 -0.5115 29 1 6.6665 -1.1185 -0.5117 30 1 9.0752 -0.6139 3.4681 31 1 8.0586 -2.0749 3.4767 32 1 12.7517 -4.2413 6.5364 33 1 6.4775 2.6849 0.0017 34 1 3.6204 4.1775 -1.0282 35 1 2.7865 3.8689 0.5137 36 1 4.4553 4.4880 0.5128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058681471.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:35 Heat of formation + Delta-G solvation = -172.163053 kcal Electronic energy + Delta-G solvation = -22369.413212 eV Core-core repulsion = 18525.709999 eV Total energy + Delta-G solvation = -3843.703213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.075 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.05137 -41.60128 -41.34690 -37.84230 -37.77159 -35.33129 -34.68111 -33.24656 -31.41513 -29.64937 -28.76627 -27.89540 -27.49016 -23.63648 -22.81223 -22.54232 -21.03943 -19.97173 -19.46870 -18.87665 -18.20370 -17.99518 -17.78335 -17.63971 -17.09650 -16.92197 -16.13876 -15.92795 -15.27566 -15.15520 -14.90711 -14.55498 -14.43101 -14.22495 -14.06058 -13.87946 -13.73383 -13.56477 -13.34414 -13.14540 -13.01346 -12.94357 -12.76271 -12.01893 -11.95043 -11.91118 -11.78740 -11.73380 -11.17229 -10.86766 -10.62431 -9.93375 -9.05244 -8.51566 -6.25170 -0.55118 0.57940 0.99097 1.02551 1.09836 1.33456 1.43135 1.51775 1.60644 1.73439 2.01758 2.24694 2.65155 2.86692 3.16731 3.52884 3.62690 3.74365 3.97334 4.08085 4.12482 4.17174 4.21286 4.29327 4.38552 4.42532 4.51371 4.66756 4.73414 4.92840 4.93308 5.07662 5.08557 5.31337 5.62736 5.70508 6.12755 6.41164 6.54516 6.92275 8.60712 Molecular weight = 314.07amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.002265 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.920594 B =12360.480814 C =12679.758393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.554 3.446 4 O -0.497 6.497 5 C -0.090 4.090 6 O -0.160 6.160 7 C 0.020 3.980 8 C 0.139 3.861 9 O -0.349 6.349 10 C 0.498 3.502 11 O -0.509 6.509 12 C -0.092 4.092 13 S -0.157 6.157 14 C -0.532 4.532 15 H 0.065 0.935 16 C 0.045 3.955 17 N -0.915 5.915 18 Si 0.915 3.085 19 H -0.260 1.260 20 H -0.261 1.261 21 H -0.232 1.232 22 C -0.179 4.179 23 C -0.068 4.068 24 C -0.097 4.097 25 H 0.073 0.927 26 H 0.132 0.868 27 H 0.070 0.930 28 H 0.136 0.864 29 H 0.099 0.901 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.278 0.722 33 H 0.195 0.805 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.941 12.970 -15.841 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.400 3.600 4 O -0.388 6.388 5 C -0.140 4.140 6 O -0.056 6.056 7 C -0.032 4.032 8 C 0.066 3.934 9 O -0.267 6.267 10 C 0.340 3.660 11 O -0.396 6.396 12 C -0.240 4.240 13 S 0.070 5.930 14 C -0.680 4.680 15 H 0.083 0.917 16 C -0.160 4.160 17 N -0.553 5.553 18 Si 0.736 3.264 19 H -0.185 1.185 20 H -0.185 1.185 21 H -0.156 1.156 22 C -0.198 4.198 23 C -0.070 4.070 24 C -0.153 4.153 25 H 0.092 0.908 26 H 0.150 0.850 27 H 0.089 0.911 28 H 0.154 0.846 29 H 0.117 0.883 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.212 0.788 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.473 12.354 -16.915 28.600 hybrid contribution -0.314 -0.033 1.186 1.228 sum -19.788 12.321 -15.729 28.121 Atomic orbital electron populations 1.23704 0.73146 1.06203 1.03363 1.86674 1.26217 1.31268 1.83587 1.19178 0.85452 0.82358 0.73062 1.90900 1.64547 1.36013 1.47375 1.20781 0.88176 0.86275 1.18751 1.84074 1.15734 1.35095 1.70727 1.22363 0.83007 0.94113 1.03707 1.21452 0.90674 1.00199 0.81064 1.86538 1.43582 1.64551 1.32050 1.22760 0.77418 0.74474 0.91333 1.90686 1.55691 1.50289 1.42952 1.22961 1.01455 1.05547 0.94057 1.84601 1.32633 1.65667 1.10137 1.22422 1.16670 1.38437 0.90453 0.91719 1.25587 0.97968 0.95298 0.97192 1.70020 1.29694 1.39696 1.15894 0.85862 0.80386 0.79463 0.80639 1.18463 1.18528 1.15603 1.21975 0.98082 0.93707 1.06020 1.21069 0.92479 0.96572 0.96927 1.20582 1.02250 0.88304 1.04186 0.90843 0.85027 0.91127 0.84600 0.88290 0.85323 0.85776 0.91284 0.78761 0.89007 0.90650 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.36 -7.38 10.58 -56.77 -0.60 -7.98 16 3 C 0.55 12.43 7.93 69.97 0.55 12.98 16 4 O -0.50 -11.68 14.53 19.43 0.28 -11.39 16 5 C -0.09 -2.04 7.18 24.04 0.17 -1.87 16 6 O -0.16 -3.87 10.67 -4.89 -0.05 -3.92 16 7 C 0.02 0.41 6.95 24.98 0.17 0.59 16 8 C 0.14 2.81 5.99 71.23 0.43 3.23 16 9 O -0.35 -9.22 10.20 -51.46 -0.53 -9.75 16 10 C 0.50 15.99 7.98 71.24 0.57 16.56 16 11 O -0.51 -18.62 15.61 21.98 0.34 -18.28 16 12 C -0.09 -3.31 6.27 71.24 0.45 -2.86 16 13 S -0.16 -7.41 18.55 -56.49 -1.05 -8.46 16 14 C -0.53 -29.85 10.04 67.95 0.68 -29.17 16 15 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 16 C 0.05 2.58 5.50 84.86 0.47 3.04 16 17 N -0.92 -54.54 13.97 21.65 0.30 -54.23 16 18 Si 0.91 43.03 27.74 68.60 1.90 44.93 16 19 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 21 H -0.23 -10.72 6.74 99.48 0.67 -10.05 16 22 C -0.18 -2.98 10.72 22.07 0.24 -2.74 16 23 C -0.07 -1.27 6.20 -19.73 -0.12 -1.39 16 24 C -0.10 -1.33 9.82 71.24 0.70 -0.63 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.14 2.11 8.13 -2.39 -0.02 2.09 16 29 H 0.10 1.95 8.13 -2.39 -0.02 1.93 16 30 H 0.13 4.23 8.14 -2.39 -0.02 4.21 16 31 H 0.12 4.20 8.14 -2.40 -0.02 4.18 16 32 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.20 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.24 6.45 -2.39 -0.02 1.22 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -70.96 342.05 7.18 -63.77 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.08 Total: 6.04 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.50 Total: -0.72 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.30 Total: -54.23 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -0.55 Total: -51.33 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.90 Total: 44.93 kcal Atomic # 16 Polarization: -7.41 SS G_CDS: -1.05 Total: -8.46 kcal Total: -70.96 7.18 -63.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058681471.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.389 kcal (2) G-P(sol) polarization free energy of solvation -70.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds