Wall clock time and date at job start Tue Mar 31 2020 10:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99937 * 2 1 4 4 H 1.48508 * 109.46894 * 239.99783 * 3 2 1 5 5 H 1.48508 * 109.47388 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47465 * 120.00006 * 3 2 1 7 7 C 1.37875 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00020 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47386 * 179.97438 * 9 7 2 11 11 O 1.45194 * 109.47397 * 179.97438 * 10 9 7 12 12 C 1.34227 * 117.00025 * 179.97438 * 11 10 9 13 13 O 1.20821 * 120.00201 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99899 * 180.02562 * 12 11 10 15 15 S 1.81399 * 109.46964 * 179.97438 * 14 12 11 16 16 C 1.81397 * 102.99921 * 180.02562 * 15 14 12 17 17 C 1.50702 * 109.47152 * 180.02562 * 16 15 14 18 18 C 1.38270 * 119.99101 * 270.27576 * 17 16 15 19 19 C 1.38215 * 120.02537 * 180.27948 * 18 17 16 20 20 C 1.38238 * 120.01126 * 359.44038 * 19 18 17 21 21 C 1.38325 * 119.98878 * 0.28199 * 20 19 18 22 22 Cl 1.73606 * 120.01335 * 179.97438 * 21 20 19 23 23 C 1.38193 * 119.99765 * 89.99978 * 17 16 15 24 24 H 0.97004 * 120.00186 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47359 * 59.99408 * 9 7 2 26 26 H 1.08999 * 109.46942 * 299.99655 * 9 7 2 27 27 H 1.09006 * 109.46796 * 59.99743 * 10 9 7 28 28 H 1.09004 * 109.46928 * 300.00336 * 10 9 7 29 29 H 1.08997 * 109.46862 * 60.00177 * 14 12 11 30 30 H 1.08996 * 109.47236 * 299.99901 * 14 12 11 31 31 H 1.08998 * 109.47482 * 59.99881 * 16 15 14 32 32 H 1.09000 * 109.47133 * 299.99750 * 16 15 14 33 33 H 1.07997 * 119.98420 * 0.02562 * 18 17 16 34 34 H 1.08002 * 119.99636 * 179.72646 * 19 18 17 35 35 H 1.07999 * 120.00577 * 180.25936 * 20 19 18 36 36 H 1.08003 * 120.00423 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9196 0.0011 12 6 2.2504 -6.0453 0.0007 13 8 3.4569 -5.9821 0.0003 14 6 1.5662 -7.3881 0.0007 15 16 2.8155 -8.7032 -0.0007 16 6 1.8151 -10.2164 -0.0014 17 6 2.7232 -11.4190 -0.0019 18 6 3.1442 -11.9666 -1.1997 19 6 3.9725 -13.0731 -1.2011 20 6 4.3897 -13.6260 -0.0048 21 6 3.9735 -13.0751 1.1938 22 17 4.4966 -13.7693 2.6966 23 6 3.1396 -11.9709 1.1946 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8906 28 1 2.8720 -3.6044 -0.8895 29 1 0.9431 -7.4783 -0.8891 30 1 0.9437 -7.4787 0.8908 31 1 1.1856 -10.2355 -0.8910 32 1 1.1865 -10.2367 0.8889 33 1 2.8225 -11.5320 -2.1346 34 1 4.2975 -13.5031 -2.1370 35 1 5.0403 -14.4880 -0.0060 36 1 2.8139 -11.5407 2.1302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058856879.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:06 Heat of formation + Delta-G solvation = -82.132806 kcal Electronic energy + Delta-G solvation = -19361.002039 eV Core-core repulsion = 15961.911995 eV Total energy + Delta-G solvation = -3399.090044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.053 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.99934 -39.79611 -36.88846 -36.22462 -33.39864 -33.30080 -31.19258 -31.00912 -29.77308 -27.60073 -25.01161 -23.15174 -22.21211 -21.40415 -20.63225 -17.71791 -17.42173 -16.60300 -16.41102 -16.20496 -16.08512 -15.89496 -15.49495 -14.53235 -14.52278 -14.34558 -14.15875 -13.74876 -13.32858 -13.26596 -12.75517 -12.61286 -12.37088 -12.00044 -11.85508 -11.77209 -11.26908 -11.25511 -11.10921 -10.77818 -10.74937 -10.36237 -10.33649 -9.71201 -9.68014 -9.35302 -9.32737 -9.08291 -8.46865 -7.90532 -6.13100 -4.17765 0.43112 0.75857 1.36527 1.72322 2.20787 2.41602 3.08908 3.25389 3.28833 3.32820 3.36720 4.06695 4.28175 4.36612 4.54920 4.64948 4.77404 4.80117 4.93440 4.96275 5.06158 5.13501 5.23439 5.25667 5.41952 5.74381 5.85076 5.98372 6.02419 6.03765 6.30216 6.57880 6.87104 7.50806 7.57434 7.82315 8.06864 8.20446 8.87402 9.46773 10.98268 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.035980 B = 0.001810 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.019878 B =15462.229027 C =15714.526016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.353 6.353 12 C 0.471 3.529 13 O -0.497 6.497 14 C -0.107 4.107 15 S -0.167 6.167 16 C -0.070 4.070 17 C -0.057 4.057 18 C -0.096 4.096 19 C -0.107 4.107 20 C -0.107 4.107 21 C -0.034 4.034 22 Cl -0.069 7.069 23 C -0.092 4.092 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 -30.109 -0.405 30.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.269 6.269 12 C 0.312 3.688 13 O -0.385 6.385 14 C -0.256 4.256 15 S 0.061 5.939 16 C -0.217 4.217 17 C -0.059 4.059 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.127 4.127 21 C -0.061 4.061 22 Cl -0.040 7.040 23 C -0.112 4.112 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.635 -29.800 -0.266 30.160 hybrid contribution -0.804 0.849 0.160 1.180 sum 3.830 -28.952 -0.106 29.204 Atomic orbital electron populations 1.69965 1.06090 1.27146 1.49625 1.24986 0.94942 0.99419 0.94807 0.86512 0.79470 0.82379 0.78821 1.20045 1.21105 1.20034 1.20932 0.93176 0.90055 1.52423 0.92252 1.19180 0.94179 0.88949 0.98920 1.23727 0.96451 0.78282 1.01197 1.86506 1.42234 1.15573 1.82596 1.22335 0.86302 0.86430 0.73713 1.90686 1.15238 1.87755 1.44832 1.23136 1.01494 0.92374 1.08598 1.87844 1.11497 0.96425 1.98104 1.22449 0.99271 0.93524 1.06498 1.19089 0.98511 0.95223 0.93089 1.21205 0.96885 0.95625 0.97855 1.21122 0.97502 0.96038 0.97822 1.21121 1.00191 1.00550 0.90812 1.20879 1.00619 0.97149 0.87460 1.98385 1.89556 1.83856 1.32231 1.20964 0.96873 0.94614 0.98790 0.92627 0.95313 0.95301 0.92092 0.92085 0.86042 0.86038 0.88454 0.88583 0.84889 0.84716 0.84826 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.68 5.40 37.16 0.20 1.88 16 11 O -0.35 -6.86 10.22 -39.25 -0.40 -7.27 16 12 C 0.47 8.04 7.98 36.01 0.29 8.33 16 13 O -0.50 -9.94 15.61 -18.75 -0.29 -10.24 16 14 C -0.11 -1.24 6.54 36.01 0.24 -1.00 16 15 S -0.17 -1.96 20.86 -107.50 -2.24 -4.20 16 16 C -0.07 -0.52 6.07 36.01 0.22 -0.30 16 17 C -0.06 -0.46 5.14 -104.63 -0.54 -0.99 16 18 C -0.10 -0.68 9.70 -39.58 -0.38 -1.06 16 19 C -0.11 -0.68 10.05 -39.59 -0.40 -1.07 16 20 C -0.11 -0.75 9.83 -39.55 -0.39 -1.14 16 21 C -0.03 -0.28 6.32 -39.50 -0.25 -0.53 16 22 Cl -0.07 -0.56 28.96 -51.86 -1.50 -2.07 16 23 C -0.09 -0.76 9.49 -39.55 -0.38 -1.14 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.34 8.13 -51.93 -0.42 0.91 16 28 H 0.06 1.34 8.13 -51.93 -0.42 0.91 16 29 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.10 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.10 0.59 8.08 -51.92 -0.42 0.17 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -32.15 349.51 -10.01 -42.17 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -4.61 Total: -4.52 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -1.95 Total: -10.01 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.74 Total: -25.44 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.69 Total: -17.50 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -2.24 Total: -4.20 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.15 -10.01 -42.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058856879.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.967 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds