Wall clock time and date at job start Tue Mar 31 2020 10:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47465 * 65.00068 * 4 3 2 6 6 C 1.46500 * 119.99608 * 269.99950 * 5 4 3 7 7 C 1.50702 * 109.47242 * 90.00129 * 6 5 4 8 8 H 1.08004 * 119.99979 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00073 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00040 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00060 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47032 * 89.99495 * 11 9 7 13 13 H 1.48497 * 109.47319 * 209.99500 * 11 9 7 14 14 H 1.48500 * 109.47151 * 329.99737 * 11 9 7 15 15 C 1.39002 * 120.00263 * 89.99806 * 5 4 3 16 16 C 1.39114 * 119.69638 * 4.72589 * 15 5 4 17 17 C 1.38327 * 119.11837 * 179.79359 * 16 15 5 18 18 C 1.38835 * 118.51352 * 0.47592 * 17 16 15 19 19 C 1.38151 * 119.32282 * 359.74756 * 18 17 16 20 20 Br 1.89102 * 119.58435 * 180.02562 * 19 18 17 21 21 N 1.32034 * 120.83246 * 0.02562 * 19 18 17 22 22 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 23 23 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 25 25 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 26 26 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 27 27 H 1.09002 * 109.46642 * 184.99995 * 4 3 2 28 28 H 1.09002 * 109.47069 * 304.99524 * 4 3 2 29 29 H 1.09003 * 109.46875 * 209.99786 * 6 5 4 30 30 H 1.08995 * 109.47175 * 329.99625 * 6 5 4 31 31 H 0.96997 * 120.00299 * 179.97438 * 10 9 7 32 32 H 1.07998 * 120.44387 * 0.02562 * 16 15 5 33 33 H 1.08003 * 120.74311 * 180.19916 * 17 16 15 34 34 H 1.08008 * 120.33647 * 179.77013 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1052 -0.8920 -1.3426 7 6 2.7983 -1.4852 -1.8023 8 1 1.9553 -0.8416 -2.0066 9 6 2.6784 -2.8495 -1.9610 10 7 3.7047 -3.6332 -1.7118 11 14 1.0583 -3.5848 -2.5301 12 1 1.0430 -3.6609 -4.0131 13 1 0.9073 -4.9488 -1.9628 14 1 -0.0635 -2.7291 -2.0668 15 6 4.2704 1.3579 -2.3553 16 6 4.2408 2.7435 -2.2350 17 6 4.5404 3.5216 -3.3388 18 6 4.8511 2.8857 -4.5332 19 6 4.8571 1.5051 -4.5831 20 35 5.2799 0.6314 -6.2060 21 7 4.5714 0.7880 -3.5120 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6885 1.8465 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.9784 2.1766 0.0889 28 1 3.8514 0.5683 0.8410 29 1 4.8894 -1.1436 -2.0567 30 1 4.3627 -1.2950 -0.3632 31 1 3.6203 -4.5931 -1.8231 32 1 3.9910 3.2056 -1.2914 33 1 4.5285 4.5996 -3.2740 34 1 5.0859 3.4645 -5.4144 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069018520.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:37 Heat of formation + Delta-G solvation = 13.926820 kcal Electronic energy + Delta-G solvation = -18908.058209 eV Core-core repulsion = 15888.245817 eV Total energy + Delta-G solvation = -3019.812392 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.81497 -37.55492 -35.68137 -32.65683 -32.15791 -31.34635 -29.40951 -28.91681 -26.47822 -25.56851 -23.24199 -23.08075 -21.85903 -20.30961 -17.11121 -16.54389 -16.06986 -15.70640 -15.52796 -14.81603 -14.58704 -14.38311 -14.05489 -13.79492 -13.37886 -12.76433 -12.42374 -12.15565 -11.74826 -11.47568 -11.43350 -11.06485 -10.86500 -10.66751 -10.63236 -10.36288 -10.01492 -9.95902 -9.75202 -9.31808 -8.94195 -8.80060 -8.76719 -8.20526 -6.85483 -5.80309 -3.77937 1.48253 1.81578 1.87192 3.41231 3.47464 3.48093 3.72922 4.24082 4.37085 4.61977 4.99856 5.27989 5.43745 5.47263 5.48375 5.54687 5.58524 5.65846 5.71350 5.76683 5.80314 5.85631 6.17441 6.19776 6.24828 6.53144 6.73923 7.14380 7.55847 7.77999 7.83668 8.12229 8.28881 8.47472 8.69529 9.23370 9.80958 11.27964 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.006421 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.102142 B = 4359.310990 C = 5816.733834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.338 6.338 3 C 0.042 3.958 4 C 0.128 3.872 5 N -0.577 5.577 6 C 0.257 3.743 7 C -0.478 4.478 8 H 0.063 0.937 9 C 0.055 3.945 10 N -0.906 5.906 11 Si 0.889 3.111 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.428 3.572 16 C -0.253 4.253 17 C -0.030 4.030 18 C -0.231 4.231 19 C 0.185 3.815 20 Br -0.030 7.030 21 N -0.497 5.497 22 H 0.030 0.970 23 H 0.081 0.919 24 H 0.027 0.973 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.027 0.973 31 H 0.257 0.743 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 14.851 -1.980 15.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.255 6.255 3 C -0.037 4.037 4 C 0.004 3.996 5 N -0.283 5.283 6 C 0.138 3.862 7 C -0.517 4.517 8 H 0.081 0.919 9 C -0.144 4.144 10 N -0.547 5.547 11 Si 0.718 3.282 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.202 1.202 15 C 0.189 3.811 16 C -0.280 4.280 17 C -0.056 4.056 18 C -0.258 4.258 19 C -0.035 4.035 20 Br 0.054 6.946 21 N -0.215 5.215 22 H 0.049 0.951 23 H 0.100 0.900 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.046 13.062 -2.390 13.320 hybrid contribution -1.396 0.694 0.069 1.561 sum -0.351 13.756 -2.321 13.955 Atomic orbital electron populations 1.22622 0.83127 1.02312 0.98241 1.88435 1.17587 1.24777 1.94742 1.22951 0.95054 0.86708 0.98942 1.21467 0.92258 0.98449 0.87476 1.47224 1.65648 1.08469 1.07005 1.19335 0.98140 0.71248 0.97464 1.21352 0.97002 0.91344 1.41997 0.91876 1.24826 0.96112 0.97117 0.96382 1.69926 1.29834 1.04002 1.50957 0.86648 0.84640 0.78145 0.78723 1.21089 1.21668 1.20230 1.18339 0.88833 0.87301 0.86607 1.21476 1.12811 0.93047 1.00629 1.21115 0.93539 0.99453 0.91539 1.21393 1.11543 0.93020 0.99828 1.22293 0.98433 0.90385 0.92403 1.96686 1.92285 1.81767 1.23895 1.67038 1.17547 1.39256 0.97631 0.95092 0.90047 0.95464 0.93885 0.93978 0.90230 0.89516 0.93894 0.95478 0.93301 0.85216 0.85064 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 101.05 1.11 1.68 16 2 O -0.34 -6.74 7.34 -35.23 -0.26 -7.00 16 3 C 0.04 0.67 6.28 37.16 0.23 0.90 16 4 C 0.13 2.07 5.69 -4.04 -0.02 2.04 16 5 N -0.58 -12.01 2.55 -175.21 -0.45 -12.46 16 6 C 0.26 6.64 5.10 -5.19 -0.03 6.61 16 7 C -0.48 -13.32 7.60 -34.44 -0.26 -13.58 16 8 H 0.06 1.80 6.55 -52.48 -0.34 1.45 16 9 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.91 -27.41 13.29 55.43 0.74 -26.68 16 11 Si 0.89 22.56 29.54 -169.99 -5.02 17.54 16 12 H -0.28 -7.30 7.11 56.52 0.40 -6.89 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.43 8.56 7.37 -155.02 -1.14 7.42 16 16 C -0.25 -3.91 9.27 -39.22 -0.36 -4.28 16 17 C -0.03 -0.41 10.16 -39.33 -0.40 -0.81 16 18 C -0.23 -3.47 9.82 -39.39 -0.39 -3.86 16 19 C 0.19 3.45 7.16 -17.50 -0.13 3.32 16 20 Br -0.03 -0.51 33.86 -68.01 -2.30 -2.81 16 21 N -0.50 -10.91 9.13 -10.84 -0.10 -11.01 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.99 5.98 -51.93 -0.31 0.68 16 28 H 0.09 1.40 7.89 -51.93 -0.41 0.99 16 29 H 0.04 1.24 7.45 -51.93 -0.39 0.85 16 30 H 0.03 0.74 7.89 -51.93 -0.41 0.33 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.13 1.63 6.03 -52.49 -0.32 1.31 16 33 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.13 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 308.88 15.07 4.65 4.65 Total: -1.00 -32.35 308.88 -8.49 -40.84 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -4.27 Total: -4.02 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.48 Total: 0.95 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.19 Total: -50.14 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.26 Total: -7.00 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.30 Total: -2.81 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.35 -8.49 -40.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069018520.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.762 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds