Wall clock time and date at job start Tue Mar 31 2020 11:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00004 * 2 1 4 4 H 1.48506 * 109.47101 * 269.99890 * 3 2 1 5 5 H 1.48497 * 109.47288 * 29.99733 * 3 2 1 6 6 H 1.48504 * 109.47125 * 150.00161 * 3 2 1 7 7 C 1.37870 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99948 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00202 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47272 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47465 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47407 * 179.97438 * 11 10 9 13 13 S 1.65607 * 120.00127 * 164.99773 * 12 11 10 14 14 O 1.42107 * 106.40053 * 311.46118 * 13 12 11 15 15 O 1.42099 * 106.40001 * 178.53996 * 13 12 11 16 16 C 1.76198 * 107.21643 * 64.99603 * 13 12 11 17 17 C 1.38252 * 120.00213 * 269.97972 * 16 13 12 18 18 C 1.38212 * 119.99855 * 180.02562 * 17 16 13 19 19 C 1.38254 * 120.00343 * 359.95229 * 18 17 16 20 20 C 1.38218 * 119.99671 * 0.13884 * 19 18 17 21 21 N 1.48026 * 119.99635 * 179.97438 * 20 19 18 22 22 O 1.21802 * 119.99232 * 179.88761 * 21 20 19 23 23 O 1.21794 * 119.99957 * 359.88958 * 21 20 19 24 24 C 1.38215 * 119.99492 * 90.00282 * 16 13 12 25 25 H 0.96999 * 119.99775 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47053 * 59.99879 * 9 7 2 27 27 H 1.09004 * 109.47073 * 299.99550 * 9 7 2 28 28 H 1.09000 * 109.47485 * 59.99606 * 10 9 7 29 29 H 1.09002 * 109.47254 * 299.99954 * 10 9 7 30 30 H 1.09000 * 109.47175 * 59.99313 * 11 10 9 31 31 H 1.09004 * 109.46893 * 299.99386 * 11 10 9 32 32 H 0.96998 * 120.00240 * 344.99794 * 12 11 10 33 33 H 1.08001 * 120.00307 * 359.97438 * 17 16 13 34 34 H 1.07999 * 119.99956 * 179.97438 * 18 17 16 35 35 H 1.07997 * 120.00492 * 180.02562 * 19 18 17 36 36 H 1.07995 * 120.00164 * 359.70284 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0018 13 16 1.9171 -7.6302 0.3726 14 8 1.1532 -7.5182 1.5656 15 8 3.0528 -8.4759 0.2533 16 6 0.7943 -8.1234 -0.8926 17 6 -0.5561 -7.8585 -0.7602 18 6 -1.4369 -8.2458 -1.7524 19 6 -0.9674 -8.8973 -2.8778 20 6 0.3825 -9.1638 -3.0093 21 7 0.8851 -9.8619 -4.2140 22 8 2.0749 -10.0949 -4.3308 23 8 0.1089 -10.2031 -5.0883 24 6 1.2637 -8.7755 -2.0172 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8713 -3.6039 0.8922 29 1 2.8726 -3.6047 -0.8877 30 1 0.8545 -5.0449 -0.8894 31 1 0.8527 -5.0447 0.8906 32 1 3.3643 -5.9420 -0.2150 33 1 -0.9230 -7.3496 0.1190 34 1 -2.4918 -8.0393 -1.6487 35 1 -1.6555 -9.1996 -3.6533 36 1 2.3191 -8.9785 -2.1227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079864599.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:10 Heat of formation + Delta-G solvation = -62.050057 kcal Electronic energy + Delta-G solvation = -23171.279271 eV Core-core repulsion = 19364.643667 eV Total energy + Delta-G solvation = -3806.635604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.081 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.54044 -39.88726 -37.55979 -36.90980 -36.21104 -36.13308 -33.37179 -32.66868 -32.20084 -31.01187 -27.04901 -26.54015 -24.21663 -23.19989 -23.01613 -20.82069 -20.39726 -19.26571 -18.98596 -17.89562 -17.61084 -17.43682 -16.85971 -16.64584 -16.29676 -15.64030 -14.91713 -14.77152 -14.62361 -14.48359 -13.94410 -13.16042 -12.90295 -12.76552 -12.46680 -12.41292 -12.29333 -12.20004 -11.91115 -11.72541 -11.65546 -11.46043 -11.38067 -11.00769 -10.89353 -10.62853 -10.48184 -10.15224 -10.07074 -9.60530 -9.47223 -9.21869 -8.45864 -6.11189 -4.14030 -0.64942 -0.11481 0.13808 0.86167 0.96663 2.42544 2.80466 3.25444 3.32414 3.35364 3.40604 3.69934 3.89606 4.06599 4.17799 4.30553 4.37297 4.57058 4.81960 4.98083 5.09716 5.16725 5.25355 5.28050 5.44487 5.61457 5.69846 5.88563 6.00304 6.40924 6.59344 6.78757 6.93800 7.27173 7.51169 7.62670 7.86918 8.28326 8.92309 9.50972 11.00067 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.003022 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.458926 B = 9264.020096 C = 9904.084465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.116 4.116 11 C 0.109 3.891 12 N -1.108 6.108 13 S 2.696 3.304 14 O -0.944 6.944 15 O -0.954 6.954 16 C -0.678 4.678 17 C 0.030 3.970 18 C -0.132 4.132 19 C -0.006 4.006 20 C -0.067 4.067 21 N 0.029 4.971 22 O -0.152 6.152 23 O -0.156 6.156 24 C 0.046 3.954 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.421 0.579 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.572 -18.525 -3.352 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.156 4.156 11 C -0.016 4.016 12 N -0.871 5.871 13 S 2.782 3.218 14 O -0.934 6.934 15 O -0.944 6.944 16 C -0.762 4.762 17 C 0.011 3.989 18 C -0.152 4.152 19 C -0.025 4.025 20 C -0.150 4.150 21 N 0.549 4.451 22 O -0.369 6.369 23 O -0.372 6.372 24 C 0.026 3.974 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.257 0.743 33 H 0.182 0.818 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.955 -18.618 -2.032 18.960 hybrid contribution 0.436 0.939 -1.225 1.604 sum -2.519 -17.679 -3.257 18.152 Atomic orbital electron populations 1.69951 1.06067 1.26782 1.50577 1.25018 0.94877 0.99357 0.95151 0.86573 0.79860 0.83308 0.78132 1.20654 1.21178 1.19824 1.21197 0.93091 0.90877 1.51004 0.92560 1.19077 0.93903 0.91046 0.97584 1.21866 0.99706 0.92457 1.01537 1.21689 0.91368 0.86906 1.01601 1.55496 1.19746 1.23752 1.88101 1.02082 0.73317 0.72712 0.73727 1.93629 1.72545 1.86056 1.41146 1.93617 1.48644 1.65535 1.86636 1.31532 1.12183 1.14924 1.17563 1.21564 0.90854 0.88661 0.97815 1.21452 1.01866 0.99105 0.92742 1.21414 0.92779 0.90438 0.97909 1.21213 0.95591 1.08560 0.89683 1.43522 1.00936 0.98908 1.01709 1.94585 0.99232 1.58569 1.84521 1.94545 1.54019 1.54573 1.34102 1.20771 1.01474 0.87059 0.88141 0.92896 0.96375 0.96123 0.92110 0.92448 0.92173 0.90173 0.74282 0.81825 0.82199 0.82079 0.81282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -13.94 9.11 -34.44 -0.31 -14.25 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.12 -2.04 5.29 -26.73 -0.14 -2.18 16 11 C 0.11 1.48 6.22 -4.04 -0.03 1.46 16 12 N -1.11 -12.37 6.00 -10.61 -0.06 -12.43 16 13 S 2.70 30.09 5.74 -107.50 -0.62 29.47 16 14 O -0.94 -12.79 16.75 -57.17 -0.96 -13.75 16 15 O -0.95 -12.57 17.28 -57.17 -0.99 -13.56 16 16 C -0.68 -6.51 5.95 -39.58 -0.24 -6.75 16 17 C 0.03 0.24 9.52 -39.59 -0.38 -0.14 16 18 C -0.13 -0.85 10.05 -39.58 -0.40 -1.25 16 19 C -0.01 -0.05 9.56 -39.58 -0.38 -0.43 16 20 C -0.07 -0.68 6.85 -79.94 -0.55 -1.23 16 21 N 0.03 0.35 4.45 33.96 0.15 0.50 16 22 O -0.15 -2.00 18.45 -29.46 -0.54 -2.54 16 23 O -0.16 -1.92 18.45 -29.46 -0.54 -2.47 16 24 C 0.05 0.46 9.03 -39.58 -0.36 0.10 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.08 7.75 -51.93 -0.40 0.68 16 32 H 0.42 4.08 8.65 -34.47 -0.30 3.78 16 33 H 0.16 1.06 7.62 -52.49 -0.40 0.66 16 34 H 0.16 0.52 8.06 -52.49 -0.42 0.09 16 35 H 0.16 0.89 7.61 -52.49 -0.40 0.49 16 36 H 0.17 1.60 7.17 -52.49 -0.38 1.23 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -33.69 336.91 -9.73 -43.42 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -3.95 Total: -1.82 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -3.01 Total: -22.81 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.82 Total: -36.83 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -3.03 Total: -32.32 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 30.09 SS G_CDS: -0.62 Total: 29.47 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.69 -9.73 -43.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079864599.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.628 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds