Wall clock time and date at job start Tue Mar 31 2020 11:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00004 * 2 1 4 4 H 1.48506 * 109.47101 * 269.99890 * 3 2 1 5 5 H 1.48497 * 109.47288 * 29.99733 * 3 2 1 6 6 H 1.48504 * 109.47125 * 150.00161 * 3 2 1 7 7 C 1.37870 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99948 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00202 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47272 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47465 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47407 * 179.97438 * 11 10 9 13 13 S 1.65607 * 120.00127 * 164.99773 * 12 11 10 14 14 O 1.42107 * 106.40053 * 311.46118 * 13 12 11 15 15 O 1.42099 * 106.40001 * 178.53996 * 13 12 11 16 16 C 1.76198 * 107.21643 * 64.99603 * 13 12 11 17 17 C 1.38252 * 120.00213 * 269.97972 * 16 13 12 18 18 C 1.38212 * 119.99855 * 180.02562 * 17 16 13 19 19 C 1.38254 * 120.00343 * 359.95229 * 18 17 16 20 20 C 1.38218 * 119.99671 * 0.13884 * 19 18 17 21 21 N 1.48026 * 119.99635 * 179.97438 * 20 19 18 22 22 O 1.21802 * 119.99232 * 179.88761 * 21 20 19 23 23 O 1.21794 * 119.99957 * 359.88958 * 21 20 19 24 24 C 1.38215 * 119.99492 * 90.00282 * 16 13 12 25 25 H 0.96999 * 119.99775 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47053 * 59.99879 * 9 7 2 27 27 H 1.09004 * 109.47073 * 299.99550 * 9 7 2 28 28 H 1.09000 * 109.47485 * 59.99606 * 10 9 7 29 29 H 1.09002 * 109.47254 * 299.99954 * 10 9 7 30 30 H 1.09000 * 109.47175 * 59.99313 * 11 10 9 31 31 H 1.09004 * 109.46893 * 299.99386 * 11 10 9 32 32 H 0.96998 * 120.00240 * 344.99794 * 12 11 10 33 33 H 1.08001 * 120.00307 * 359.97438 * 17 16 13 34 34 H 1.07999 * 119.99956 * 179.97438 * 18 17 16 35 35 H 1.07997 * 120.00492 * 180.02562 * 19 18 17 36 36 H 1.07995 * 120.00164 * 359.70284 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0018 13 16 1.9171 -7.6302 0.3726 14 8 1.1532 -7.5182 1.5656 15 8 3.0528 -8.4759 0.2533 16 6 0.7943 -8.1234 -0.8926 17 6 -0.5561 -7.8585 -0.7602 18 6 -1.4369 -8.2458 -1.7524 19 6 -0.9674 -8.8973 -2.8778 20 6 0.3825 -9.1638 -3.0093 21 7 0.8851 -9.8619 -4.2140 22 8 2.0749 -10.0949 -4.3308 23 8 0.1089 -10.2031 -5.0883 24 6 1.2637 -8.7755 -2.0172 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8713 -3.6039 0.8922 29 1 2.8726 -3.6047 -0.8877 30 1 0.8545 -5.0449 -0.8894 31 1 0.8527 -5.0447 0.8906 32 1 3.3643 -5.9420 -0.2150 33 1 -0.9230 -7.3496 0.1190 34 1 -2.4918 -8.0393 -1.6487 35 1 -1.6555 -9.1996 -3.6533 36 1 2.3191 -8.9785 -2.1227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079864599.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:08 Heat of formation + Delta-G solvation = -84.938680 kcal Electronic energy + Delta-G solvation = -23172.271796 eV Core-core repulsion = 19364.643667 eV Total energy + Delta-G solvation = -3807.628129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.081 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.41359 -40.57176 -38.55820 -37.82807 -37.42439 -37.14217 -35.18067 -33.38860 -32.85864 -32.65044 -28.22117 -27.86206 -24.92795 -24.77703 -23.79220 -22.25678 -21.29784 -20.20915 -19.88250 -18.78244 -18.59859 -18.53579 -18.14826 -17.50298 -17.35539 -16.61505 -16.43447 -16.05055 -15.66488 -15.37551 -14.65925 -14.31463 -14.10548 -13.83373 -13.76435 -13.59405 -13.37763 -13.27124 -13.23662 -12.85406 -12.80196 -12.53518 -12.49221 -12.42352 -12.33247 -12.23369 -11.69292 -11.39959 -11.19717 -11.13136 -10.77759 -10.53703 -10.50280 -8.18533 -6.27717 -1.43809 -0.92939 -0.65225 0.07164 0.16285 1.42173 1.43045 1.53347 1.68537 1.98262 2.42723 2.52650 2.97556 3.15967 3.19701 3.38711 3.55950 3.66085 3.83620 3.99205 4.23728 4.27003 4.33935 4.46711 4.58694 4.68043 4.70440 4.95771 4.99104 5.18763 5.23553 5.23794 5.56231 5.78230 5.88793 5.98349 6.27716 6.32210 6.89442 7.41359 8.92816 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.003022 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.458926 B = 9264.020096 C = 9904.084465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.117 3.883 12 N -1.105 6.105 13 S 2.718 3.282 14 O -0.968 6.968 15 O -0.976 6.976 16 C -0.681 4.681 17 C 0.026 3.974 18 C -0.117 4.117 19 C 0.000 4.000 20 C -0.083 4.083 21 N 0.030 4.970 22 O -0.192 6.192 23 O -0.151 6.151 24 C 0.035 3.965 25 H 0.263 0.737 26 H 0.002 0.998 27 H 0.000 1.000 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.429 0.571 33 H 0.181 0.819 34 H 0.201 0.799 35 H 0.185 0.815 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.443 -18.504 -3.519 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.009 4.009 12 N -0.868 5.868 13 S 2.806 3.194 14 O -0.958 6.958 15 O -0.967 6.967 16 C -0.768 4.768 17 C 0.007 3.993 18 C -0.136 4.136 19 C -0.019 4.019 20 C -0.167 4.167 21 N 0.546 4.454 22 O -0.401 6.401 23 O -0.371 6.371 24 C 0.015 3.985 25 H 0.072 0.928 26 H 0.020 0.980 27 H 0.019 0.981 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.266 0.734 33 H 0.198 0.802 34 H 0.218 0.782 35 H 0.203 0.797 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.714 -18.601 -2.171 19.092 hybrid contribution 0.583 0.909 -1.180 1.600 sum -3.131 -17.691 -3.351 18.276 Atomic orbital electron populations 1.70063 1.07524 1.27652 1.51778 1.25876 0.95731 1.03012 0.94970 0.85553 0.78750 0.79037 0.78341 1.20000 1.20999 1.18968 1.21713 0.93610 0.92497 1.50262 0.92256 1.18988 0.94475 0.92400 0.95736 1.21633 0.98644 0.92476 1.01895 1.21462 0.91239 0.85510 1.02648 1.55295 1.19990 1.23238 1.88258 1.01159 0.72759 0.72036 0.73401 1.93597 1.72927 1.86283 1.42946 1.93588 1.50052 1.65938 1.87082 1.31148 1.12701 1.16065 1.16842 1.21957 0.90263 0.88223 0.98866 1.21908 1.03457 0.97098 0.91125 1.21832 0.91799 0.89407 0.98828 1.21379 0.96768 1.09573 0.88936 1.43807 1.00696 0.98673 1.02192 1.94585 0.99891 1.60322 1.85296 1.94510 1.53769 1.54172 1.34656 1.20792 1.01635 0.87540 0.88521 0.92838 0.97953 0.98149 0.92156 0.91727 0.90484 0.89998 0.73441 0.80176 0.78214 0.79727 0.81657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.63 13.29 21.45 0.28 -53.34 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 42.46 29.54 68.60 2.03 44.49 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.54 -28.87 9.11 25.60 0.23 -28.64 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.02 1.03 4.97 29.85 0.15 1.18 16 10 C -0.11 -3.67 5.29 30.59 0.16 -3.51 16 11 C 0.12 3.00 6.22 86.38 0.54 3.54 16 12 N -1.10 -23.33 6.00 -187.49 -1.12 -24.46 16 13 S 2.72 58.18 5.74 -56.49 -0.32 57.86 16 14 O -0.97 -25.16 16.75 -128.00 -2.14 -27.30 16 15 O -0.98 -25.45 17.28 -128.00 -2.21 -27.67 16 16 C -0.68 -12.03 5.95 22.27 0.13 -11.90 16 17 C 0.03 0.34 9.52 22.27 0.21 0.55 16 18 C -0.12 -1.04 10.05 22.27 0.22 -0.81 16 19 C 0.00 0.00 9.56 22.27 0.21 0.22 16 20 C -0.08 -1.57 6.85 36.37 0.25 -1.32 16 21 N 0.03 0.71 4.45 -46.46 -0.21 0.50 16 22 O -0.19 -5.22 18.45 18.88 0.35 -4.87 16 23 O -0.15 -3.56 18.45 18.89 0.35 -3.21 16 24 C 0.04 0.69 9.03 22.27 0.20 0.89 16 25 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 2.10 7.75 -2.38 -0.02 2.08 16 32 H 0.43 7.83 8.65 -96.75 -0.84 6.99 16 33 H 0.18 1.76 7.62 -2.91 -0.02 1.74 16 34 H 0.20 0.20 8.06 -2.91 -0.02 0.17 16 35 H 0.19 1.35 7.61 -2.91 -0.02 1.33 16 36 H 0.17 3.22 7.17 -2.91 -0.02 3.20 16 Total: -1.00 -72.75 336.91 0.06 -72.69 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 0.29 Total: 4.54 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 2.77 Total: -39.23 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -1.05 Total: -77.30 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -3.66 Total: -63.05 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: 58.18 SS G_CDS: -0.32 Total: 57.86 kcal Total: -72.75 0.06 -72.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079864599.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.249 kcal (2) G-P(sol) polarization free energy of solvation -72.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds