Wall clock time and date at job start Tue Mar 31 2020 11:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 120.00006 * 2 1 4 4 H 1.48497 * 109.47027 * 240.00012 * 3 2 1 5 5 H 1.48504 * 109.47365 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47233 * 119.99537 * 3 2 1 7 7 C 1.38811 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99997 * 197.02665 * 7 2 1 9 9 N 1.36939 * 120.00092 * 17.02812 * 7 2 1 10 10 C 1.47075 * 120.88126 * 206.63458 * 9 7 2 11 11 C 1.53233 * 108.52180 * 231.20470 * 10 9 7 12 12 N 1.46893 * 109.34274 * 306.17093 * 11 10 9 13 13 C 1.46901 * 111.00049 * 187.25140 * 12 11 10 14 14 C 1.50701 * 109.46943 * 170.00296 * 13 12 11 15 15 C 1.38224 * 119.99987 * 105.00541 * 14 13 12 16 16 C 1.38337 * 119.99980 * 179.75105 * 15 14 13 17 17 Cl 1.73593 * 120.00050 * 180.22817 * 16 15 14 18 18 C 1.38384 * 119.99653 * 0.24256 * 16 15 14 19 19 C 1.38178 * 120.00190 * 0.03099 * 18 16 15 20 20 C 1.38338 * 120.00285 * 285.25184 * 14 13 12 21 21 Cl 1.73606 * 119.99608 * 0.02562 * 20 14 13 22 22 C 1.46906 * 111.26728 * 63.10566 * 12 11 10 23 23 C 1.47082 * 120.87998 * 26.65683 * 9 7 2 24 24 H 0.97002 * 119.99872 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.62707 * 111.49574 * 10 9 7 26 26 H 1.08994 * 109.79090 * 351.01614 * 10 9 7 27 27 H 1.08998 * 109.49392 * 186.21159 * 11 10 9 28 28 H 1.08999 * 109.51606 * 66.14954 * 11 10 9 29 29 H 1.08997 * 109.47114 * 50.00010 * 13 12 11 30 30 H 1.09004 * 109.47329 * 290.00281 * 13 12 11 31 31 H 1.07994 * 120.00233 * 0.02562 * 15 14 13 32 32 H 1.08002 * 119.99551 * 180.02562 * 18 16 15 33 33 H 1.07996 * 119.99591 * 179.97438 * 19 18 16 34 34 H 1.09002 * 109.49062 * 56.85675 * 22 12 11 35 35 H 1.09003 * 109.49134 * 176.93766 * 22 12 11 36 36 H 1.08996 * 109.62936 * 248.50251 * 23 9 7 37 37 H 1.09002 * 109.62626 * 8.89475 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0547 -1.2226 0.2744 9 7 1.3706 -2.3622 -0.3462 10 6 1.8302 -3.6608 0.1692 11 6 2.0034 -4.6201 -1.0131 12 7 0.7571 -4.6657 -1.7892 13 6 0.8223 -5.7010 -2.8295 14 6 -0.5435 -5.8879 -3.4384 15 6 -0.8145 -5.3827 -4.6961 16 6 -2.0667 -5.5588 -5.2572 17 17 -2.4052 -4.9295 -6.8392 18 6 -3.0494 -6.2365 -4.5571 19 6 -2.7802 -6.7366 -3.2975 20 6 -1.5276 -6.5608 -2.7365 21 17 -1.1893 -7.1891 -1.1539 22 6 0.4433 -3.3538 -2.3711 23 6 0.2060 -2.3427 -1.2444 24 1 -0.4850 0.8401 -0.0004 25 1 1.0902 -4.0626 0.8614 26 1 2.7832 -3.5374 0.6833 27 1 2.2368 -5.6176 -0.6410 28 1 2.8159 -4.2702 -1.6499 29 1 1.1546 -6.6401 -2.3871 30 1 1.5263 -5.3947 -3.6033 31 1 -0.0474 -4.8544 -5.2426 32 1 -4.0268 -6.3743 -4.9954 33 1 -3.5473 -7.2650 -2.7511 34 1 1.2774 -3.0211 -2.9889 35 1 -0.4548 -3.4331 -2.9837 36 1 -0.6900 -2.6178 -0.6881 37 1 0.0842 -1.3442 -1.6643 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087759929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:28 Heat of formation + Delta-G solvation = 44.101605 kcal Electronic energy + Delta-G solvation = -21765.750174 eV Core-core repulsion = 18402.383110 eV Total energy + Delta-G solvation = -3363.367064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.065 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.82161 -37.88262 -36.78738 -36.15392 -34.58507 -32.19886 -30.82820 -30.45556 -29.88282 -27.21565 -24.80281 -22.99331 -22.65430 -22.47936 -21.13140 -19.05608 -17.26591 -16.77977 -16.06113 -15.88474 -15.29927 -14.54108 -14.44660 -14.23943 -13.87806 -13.74487 -13.43511 -13.07791 -12.98634 -12.74224 -12.40599 -12.13137 -11.87404 -11.54344 -11.41708 -11.10974 -11.02194 -10.93534 -10.71696 -10.69115 -10.44980 -10.29322 -10.03434 -9.73994 -9.61324 -9.13117 -8.60428 -8.47735 -7.81610 -6.63676 -5.75458 -3.16527 0.84911 1.00936 1.89516 2.24003 3.30102 3.39770 3.45632 3.46545 4.36959 4.52031 4.55457 4.60887 4.90967 5.08617 5.23652 5.38500 5.42357 5.47282 5.58965 5.73087 5.81226 5.91232 5.94353 5.96881 6.15686 6.19415 6.25797 6.35001 6.42362 6.55850 6.72483 6.96395 7.27033 7.56969 7.67736 7.72591 7.83929 8.46242 9.23982 9.87588 10.46240 11.33291 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.004132 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.192619 B = 6774.849304 C = 7928.893935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.594 5.594 10 C 0.150 3.850 11 C 0.047 3.953 12 N -0.520 5.520 13 C 0.088 3.912 14 C -0.049 4.049 15 C -0.093 4.093 16 C -0.033 4.033 17 Cl -0.069 7.069 18 C -0.103 4.103 19 C -0.103 4.103 20 C -0.007 4.007 21 Cl -0.047 7.047 22 C 0.035 3.965 23 C 0.180 3.820 24 H 0.254 0.746 25 H 0.025 0.975 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.028 0.972 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.024 0.976 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.324 -15.689 -10.314 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.318 5.318 10 C 0.024 3.976 11 C -0.082 4.082 12 N -0.244 5.244 13 C -0.039 4.039 14 C -0.051 4.051 15 C -0.113 4.113 16 C -0.060 4.060 17 Cl -0.040 7.040 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.035 4.035 21 Cl -0.017 7.017 22 C -0.094 4.094 23 C 0.054 3.946 24 H 0.064 0.936 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.788 -15.636 -9.952 19.143 hybrid contribution 0.966 1.142 -0.627 1.622 sum -3.822 -14.494 -10.579 18.346 Atomic orbital electron populations 1.70026 1.05191 1.25540 1.53995 1.25010 0.95272 0.98288 1.01059 0.86384 0.78908 0.83497 0.78067 1.21146 1.21624 1.20911 1.19147 0.92541 0.84839 1.41688 0.91735 1.44104 1.34223 1.01232 1.52223 1.20947 0.97735 0.86441 0.92527 1.22612 0.89277 0.99506 0.96833 1.61993 1.34543 1.05345 1.22545 1.21072 0.90952 0.97682 0.94232 1.19682 0.96427 0.96082 0.92920 1.20948 0.95775 0.99665 0.94901 1.20902 0.95560 1.01236 0.88317 1.98375 1.95346 1.85812 1.24454 1.20944 0.99048 0.98058 0.94196 1.20999 0.95586 1.00586 0.95031 1.20835 0.94672 0.99742 0.88244 1.98390 1.95279 1.84808 1.23254 1.22930 0.98566 0.89236 0.98669 1.20825 0.88938 0.96454 0.88348 0.93593 0.95661 0.92684 0.91978 0.95405 0.89652 0.94142 0.84381 0.84315 0.84148 0.95734 0.92270 0.95661 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 11.15 55.49 0.62 -25.84 16 2 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 3 Si 0.90 21.81 29.59 -169.99 -5.03 16.79 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.99 9.63 -15.06 -0.15 -7.13 16 8 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -15.12 3.04 -172.02 -0.52 -15.64 16 10 C 0.15 3.20 6.69 -3.61 -0.02 3.17 16 11 C 0.05 0.82 5.62 -3.71 -0.02 0.80 16 12 N -0.52 -8.97 4.50 -235.77 -1.06 -10.03 16 13 C 0.09 1.23 4.43 -4.97 -0.02 1.21 16 14 C -0.05 -0.65 4.42 -104.59 -0.46 -1.11 16 15 C -0.09 -1.14 8.69 -39.55 -0.34 -1.49 16 16 C -0.03 -0.38 6.32 -39.49 -0.25 -0.63 16 17 Cl -0.07 -0.73 28.96 -51.86 -1.50 -2.24 16 18 C -0.10 -1.06 9.83 -39.55 -0.39 -1.45 16 19 C -0.10 -1.11 9.83 -39.55 -0.39 -1.50 16 20 C -0.01 -0.09 6.31 -39.50 -0.25 -0.34 16 21 Cl -0.05 -0.61 27.54 -51.86 -1.43 -2.04 16 22 C 0.03 0.68 5.46 -3.70 -0.02 0.66 16 23 C 0.18 4.40 5.43 -3.60 -0.02 4.38 16 24 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 1.12 7.96 -51.93 -0.41 0.71 16 27 H 0.06 0.94 7.99 -51.93 -0.41 0.52 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 1.10 7.43 -51.93 -0.39 0.71 16 30 H 0.04 0.54 7.93 -51.93 -0.41 0.13 16 31 H 0.14 1.58 8.00 -52.49 -0.42 1.16 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 1.09 6.48 -51.93 -0.34 0.76 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 2.37 6.11 -51.93 -0.32 2.05 16 LS Contribution 330.47 15.07 4.98 4.98 Total: -1.00 -29.54 330.47 -11.15 -40.69 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -4.78 Total: -3.20 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.42 Total: -3.46 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.97 Total: -51.52 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -2.93 Total: -4.28 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.54 -11.15 -40.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087759929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.789 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds