Wall clock time and date at job start Tue Mar 31 2020 10:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46936 * 2 1 4 4 C 1.50697 * 109.47208 * 240.00161 * 2 1 3 5 5 H 1.08007 * 119.99708 * 245.67636 * 4 2 1 6 6 C 1.37873 * 120.00614 * 65.66743 * 4 2 1 7 7 N 1.31513 * 120.00398 * 196.35433 * 6 4 2 8 8 Si 1.86806 * 119.99699 * 16.62494 * 6 4 2 9 9 H 1.48503 * 109.47112 * 179.72657 * 8 6 4 10 10 H 1.48501 * 109.47058 * 299.72504 * 8 6 4 11 11 H 1.48498 * 109.47047 * 59.72557 * 8 6 4 12 12 N 1.46496 * 109.46975 * 119.99555 * 2 1 3 13 13 C 1.34777 * 120.00140 * 274.99649 * 12 2 1 14 14 O 1.21354 * 120.00165 * 0.02562 * 13 12 2 15 15 C 1.49344 * 119.99779 * 179.97438 * 13 12 2 16 16 O 1.21382 * 120.00213 * 0.02562 * 15 13 12 17 17 N 1.34777 * 119.99779 * 180.02562 * 15 13 12 18 18 C 1.39819 * 119.99821 * 185.86211 * 17 15 13 19 19 C 1.38857 * 120.08011 * 19.49473 * 18 17 15 20 20 C 1.38234 * 119.94111 * 179.78672 * 19 18 17 21 21 Cl 1.73598 * 119.95666 * 180.25145 * 20 19 18 22 22 C 1.38416 * 120.08857 * 0.46355 * 20 19 18 23 23 C 1.38266 * 120.15447 * 359.79058 * 22 20 19 24 24 C 1.38300 * 120.06336 * 359.97438 * 23 22 20 25 25 F 1.35100 * 120.04273 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.47083 * 306.38685 * 1 2 3 27 27 H 1.09005 * 109.46856 * 66.38223 * 1 2 3 28 28 H 1.08994 * 109.46863 * 186.38211 * 1 2 3 29 29 H 0.96999 * 119.99712 * 355.09713 * 7 6 4 30 30 H 0.97003 * 119.99558 * 95.00617 * 12 2 1 31 31 H 0.97001 * 120.00141 * 5.87005 * 17 15 13 32 32 H 1.08002 * 120.03117 * 0.02562 * 19 18 17 33 33 H 1.07991 * 119.92212 * 179.76243 * 22 20 19 34 34 H 1.07994 * 119.96555 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5756 -1.6389 -1.1340 6 6 1.7984 -0.1752 -2.4794 7 7 1.9391 -0.9229 -3.5521 8 14 1.2889 1.6141 -2.6482 9 1 1.1064 1.9433 -4.0848 10 1 0.0118 1.8356 -1.9235 11 1 2.3434 2.4856 -2.0707 12 7 2.0183 -0.6905 1.1962 13 6 2.1471 -0.0181 2.3571 14 8 1.8581 1.1593 2.4117 15 6 2.6443 -0.7222 3.5767 16 8 2.9329 -1.9000 3.5222 17 7 2.7726 -0.0499 4.7377 18 6 3.3522 -0.6740 5.8465 19 6 4.1485 -1.7986 5.6749 20 6 4.7237 -2.4107 6.7728 21 17 5.7246 -3.8127 6.5581 22 6 4.4992 -1.9098 8.0435 23 6 3.7026 -0.7934 8.2192 24 6 3.1279 -0.1731 7.1249 25 9 2.3493 0.9174 7.2971 26 1 -0.3633 0.6096 0.8273 27 1 -0.3633 0.4117 -0.9416 28 1 -0.3633 -1.0213 0.1142 29 1 2.2756 -1.8290 -3.4709 30 1 2.2491 -1.6317 1.1526 31 1 2.4627 0.8669 4.8041 32 1 4.3215 -2.1923 4.6842 33 1 4.9468 -2.3925 8.8996 34 1 3.5291 -0.4055 9.2120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122941774.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:31 Heat of formation + Delta-G solvation = -88.962892 kcal Electronic energy + Delta-G solvation = -22953.335584 eV Core-core repulsion = 19020.028940 eV Total energy + Delta-G solvation = -3933.306644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.31043 -41.14907 -39.39925 -38.24386 -36.79516 -35.67432 -34.87203 -32.55961 -31.00119 -30.17040 -29.83515 -25.51931 -24.85277 -23.63473 -22.63193 -20.88049 -19.88893 -19.23018 -18.16526 -17.71294 -17.35348 -16.72076 -16.35575 -16.12420 -15.73373 -15.44345 -15.05543 -14.45047 -14.20226 -13.94463 -13.73123 -13.42754 -13.33622 -12.91337 -12.82457 -12.37878 -12.29785 -11.96935 -11.88530 -11.58202 -11.43878 -11.14879 -10.88790 -10.58642 -10.14173 -9.87473 -9.41976 -9.20311 -9.13432 -8.56375 -8.49846 -8.42822 -6.67577 -4.32471 0.43740 0.65698 1.54535 1.73141 2.26271 2.99722 3.30866 3.37956 3.39558 3.52169 3.69088 3.73120 4.22111 4.33737 4.56571 4.71531 4.73594 4.92153 5.08559 5.20458 5.53542 5.57464 5.75588 5.82324 6.21520 6.34949 6.37173 6.48977 6.69546 6.73603 6.98354 7.16369 7.38572 7.52298 8.07293 8.17951 8.35838 8.69249 9.37361 10.73945 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.003128 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.299964 B = 8949.603992 C =10026.478882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.239 3.761 3 H 0.047 0.953 4 C -0.622 4.622 5 H 0.065 0.935 6 C 0.041 3.959 7 N -0.893 5.893 8 Si 1.042 2.958 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.279 1.279 12 N -0.658 5.658 13 C 0.497 3.503 14 O -0.532 6.532 15 C 0.511 3.489 16 O -0.494 6.494 17 N -0.643 5.643 18 C 0.138 3.862 19 C -0.109 4.109 20 C -0.022 4.022 21 Cl -0.055 7.055 22 C -0.106 4.106 23 C -0.117 4.117 24 C 0.070 3.930 25 F -0.130 7.130 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.271 0.729 30 H 0.408 0.592 31 H 0.430 0.570 32 H 0.176 0.824 33 H 0.145 0.855 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.297 -0.860 23.737 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.137 3.863 3 H 0.065 0.935 4 C -0.660 4.660 5 H 0.083 0.917 6 C -0.167 4.167 7 N -0.526 5.526 8 Si 0.869 3.131 9 H -0.207 1.207 10 H -0.196 1.196 11 H -0.205 1.205 12 N -0.307 5.307 13 C 0.275 3.725 14 O -0.411 6.411 15 C 0.295 3.705 16 O -0.367 6.367 17 N -0.289 5.289 18 C 0.041 3.959 19 C -0.130 4.130 20 C -0.049 4.049 21 Cl -0.026 7.026 22 C -0.125 4.125 23 C -0.137 4.137 24 C 0.048 3.952 25 F -0.109 7.109 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.243 0.757 31 H 0.269 0.731 32 H 0.193 0.807 33 H 0.162 0.838 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.862 0.206 22.428 22.759 hybrid contribution 0.416 -1.178 1.234 1.756 sum 4.278 -0.972 23.661 24.065 Atomic orbital electron populations 1.22541 0.98149 1.00614 1.00901 1.19269 0.91081 0.94362 0.81625 0.93506 1.22059 1.42306 1.10840 0.90776 0.91683 1.25708 0.94312 1.05097 0.91550 1.70868 1.40190 1.10414 1.31106 0.84092 0.77597 0.74915 0.76501 1.20701 1.19628 1.20494 1.46265 1.61050 1.14723 1.08668 1.19580 0.81237 0.87283 0.84414 1.90743 1.50620 1.15092 1.84640 1.20983 0.78099 0.86832 0.84619 1.90669 1.46456 1.15099 1.84482 1.43129 1.58579 1.18209 1.08937 1.17655 0.96896 0.95896 0.85486 1.21523 0.95258 0.94770 1.01457 1.20763 0.97736 0.92089 0.94339 1.98393 1.67378 1.39247 1.97602 1.20901 0.99260 0.96236 0.96121 1.20901 0.98245 0.96236 0.98269 1.17406 0.97233 0.88297 0.92241 1.91524 1.72266 1.51139 1.95978 0.94947 0.91302 0.93313 0.91908 0.75711 0.73129 0.80694 0.83755 0.83202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 9.15 37.16 0.34 -3.19 16 2 C 0.24 5.52 2.14 -69.08 -0.15 5.38 16 3 H 0.05 1.14 6.25 -51.93 -0.32 0.82 16 4 C -0.62 -16.41 9.01 -34.44 -0.31 -16.72 16 5 H 0.07 1.81 7.96 -52.48 -0.42 1.39 16 6 C 0.04 1.11 5.31 -17.82 -0.09 1.02 16 7 N -0.89 -26.05 13.70 55.43 0.76 -25.29 16 8 Si 1.04 24.09 26.27 -169.99 -4.47 19.63 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.27 -5.77 5.72 56.52 0.32 -5.45 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 12 N -0.66 -13.19 5.06 -55.40 -0.28 -13.47 16 13 C 0.50 9.14 7.85 -11.63 -0.09 9.05 16 14 O -0.53 -10.70 16.15 5.49 0.09 -10.61 16 15 C 0.51 7.97 7.73 -11.63 -0.09 7.88 16 16 O -0.49 -8.12 13.37 5.47 0.07 -8.05 16 17 N -0.64 -8.41 5.33 -10.25 -0.05 -8.47 16 18 C 0.14 1.65 6.51 -83.66 -0.54 1.11 16 19 C -0.11 -1.32 8.56 -39.35 -0.34 -1.66 16 20 C -0.02 -0.22 6.32 -39.52 -0.25 -0.47 16 21 Cl -0.06 -0.54 28.95 -51.86 -1.50 -2.05 16 22 C -0.11 -0.83 9.82 -39.51 -0.39 -1.21 16 23 C -0.12 -0.91 10.02 -39.55 -0.40 -1.31 16 24 C 0.07 0.72 7.31 -39.23 -0.29 0.43 16 25 F -0.13 -1.38 16.75 2.25 0.04 -1.34 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.52 4.80 -51.93 -0.25 1.27 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.27 7.84 8.73 -40.82 -0.36 7.48 16 30 H 0.41 7.74 7.99 -40.82 -0.33 7.41 16 31 H 0.43 5.17 7.84 -40.82 -0.32 4.85 16 32 H 0.18 2.41 5.42 -52.49 -0.28 2.12 16 33 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 316.63 15.07 4.77 4.77 Total: -1.00 -29.18 316.63 -6.01 -35.19 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -2.84 Total: 9.38 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.60 Total: 0.31 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.42 Total: -47.23 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.16 Total: -18.66 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -4.47 Total: 19.63 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.18 -6.01 -35.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122941774.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.769 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds