Wall clock time and date at job start Tue Mar 31 2020 10:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46915 * 2 1 4 4 C 1.50702 * 109.46989 * 119.99561 * 2 1 3 5 5 H 1.08003 * 119.99780 * 94.83985 * 4 2 1 6 6 C 1.37872 * 119.99959 * 274.83649 * 4 2 1 7 7 N 1.31513 * 119.99780 * 174.92135 * 6 4 2 8 8 Si 1.86804 * 120.00461 * 354.92478 * 6 4 2 9 9 H 1.48498 * 109.46880 * 275.04235 * 8 6 4 10 10 H 1.48501 * 109.46614 * 35.04005 * 8 6 4 11 11 H 1.48496 * 109.47149 * 155.03834 * 8 6 4 12 12 N 1.46496 * 109.47342 * 240.00040 * 2 1 3 13 13 C 1.34770 * 120.00373 * 84.99629 * 12 2 1 14 14 O 1.21368 * 120.00181 * 0.02562 * 13 12 2 15 15 C 1.49340 * 120.00439 * 180.02562 * 13 12 2 16 16 O 1.21384 * 119.99610 * 0.02562 * 15 13 12 17 17 N 1.34770 * 120.00439 * 179.97438 * 15 13 12 18 18 C 1.39861 * 120.00356 * 185.66410 * 17 15 13 19 19 C 1.38875 * 120.07252 * 34.00403 * 18 17 15 20 20 C 1.38116 * 119.96139 * 179.72640 * 19 18 17 21 21 C 1.38399 * 120.10426 * 0.57519 * 20 19 18 22 22 Cl 1.73602 * 119.92703 * 179.71921 * 21 20 19 23 23 C 1.38377 * 120.14820 * 359.70266 * 21 20 19 24 24 C 1.38293 * 120.03346 * 359.97438 * 23 21 20 25 25 F 1.35104 * 120.04843 * 180.02562 * 24 23 21 26 26 H 1.09003 * 109.47295 * 294.99236 * 1 2 3 27 27 H 1.09009 * 109.47336 * 54.99241 * 1 2 3 28 28 H 1.08997 * 109.46997 * 174.98921 * 1 2 3 29 29 H 0.97003 * 120.00047 * 180.02562 * 7 6 4 30 30 H 0.97006 * 119.99823 * 265.00461 * 12 2 1 31 31 H 0.97002 * 120.00089 * 5.66199 * 17 15 13 32 32 H 1.08002 * 120.01651 * 0.02562 * 19 18 17 33 33 H 1.07997 * 119.94561 * 180.27728 * 20 19 18 34 34 H 1.07994 * 119.98399 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.2867 -1.7589 1.1827 6 6 2.1671 -0.0216 2.4173 7 7 2.5093 -0.6619 3.5139 8 14 1.8638 1.8209 2.4677 9 1 3.1036 2.5376 2.0747 10 1 0.7708 2.1685 1.5244 11 1 1.4757 2.2212 3.8441 12 7 2.0184 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8588 1.1594 -2.4116 15 6 2.6444 -0.7224 -3.5766 16 8 2.9322 -1.9004 -3.5222 17 7 2.7726 -0.0503 -4.7377 18 6 3.1241 -0.7337 -5.9062 19 6 2.6840 -2.0350 -6.1105 20 6 3.0278 -2.7057 -7.2679 21 6 3.8202 -2.0873 -8.2193 22 17 4.2556 -2.9372 -9.6690 23 6 4.2659 -0.7929 -8.0177 24 6 3.9197 -0.1134 -6.8640 25 9 4.3543 1.1506 -6.6671 26 1 -0.3634 0.4342 0.9315 27 1 -0.3634 0.5896 -0.8418 28 1 -0.3633 -1.0237 -0.0898 29 1 2.6038 -0.1775 4.3489 30 1 2.2490 -1.6318 -1.1525 31 1 2.6210 0.9075 -4.7630 32 1 2.0693 -2.5204 -5.3670 33 1 2.6817 -3.7160 -7.4285 34 1 4.8838 -0.3127 -8.7620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122994626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:38 Heat of formation + Delta-G solvation = -92.888464 kcal Electronic energy + Delta-G solvation = -22829.593372 eV Core-core repulsion = 18896.116503 eV Total energy + Delta-G solvation = -3933.476869 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.30651 -41.02287 -39.40222 -38.22632 -36.88727 -35.58843 -34.76047 -32.47923 -31.22204 -30.17785 -29.78681 -25.52336 -25.17517 -23.65478 -22.65020 -20.89245 -19.90224 -19.16954 -18.21161 -17.57585 -17.09334 -16.66560 -16.13352 -15.94585 -15.63806 -15.52478 -15.25363 -14.51066 -14.23063 -14.05125 -13.69453 -13.50151 -13.40260 -12.77572 -12.69794 -12.45832 -12.37428 -11.90956 -11.71534 -11.54761 -11.36719 -11.27788 -10.95271 -10.59157 -10.56620 -9.96806 -9.45615 -9.36728 -9.30570 -8.81425 -8.53407 -8.44141 -6.30901 -4.35718 0.41854 0.66132 1.56296 1.63052 2.31254 2.99085 3.19627 3.27996 3.32657 3.43032 3.69704 3.79033 4.23775 4.24263 4.50998 4.66275 4.77032 5.00276 5.08454 5.15813 5.50940 5.59335 5.69694 5.86173 6.16048 6.32573 6.35893 6.49880 6.69886 6.73959 6.95931 7.14248 7.30748 7.51809 7.90866 8.31942 8.42667 8.70285 9.28103 10.80616 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.002695 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.653085 B =10387.151186 C =10811.292575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.232 3.768 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.082 0.918 6 C 0.083 3.917 7 N -0.885 5.885 8 Si 0.871 3.129 9 H -0.272 1.272 10 H -0.257 1.257 11 H -0.284 1.284 12 N -0.660 5.660 13 C 0.496 3.504 14 O -0.535 6.535 15 C 0.512 3.488 16 O -0.496 6.496 17 N -0.650 5.650 18 C 0.128 3.872 19 C -0.083 4.083 20 C -0.096 4.096 21 C -0.027 4.027 22 Cl -0.059 7.059 23 C -0.126 4.126 24 C 0.088 3.912 25 F -0.127 7.127 26 H 0.060 0.940 27 H 0.031 0.969 28 H 0.049 0.951 29 H 0.269 0.731 30 H 0.408 0.592 31 H 0.428 0.572 32 H 0.156 0.844 33 H 0.146 0.854 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.943 -1.805 -23.831 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.131 3.869 3 H 0.070 0.930 4 C -0.575 4.575 5 H 0.100 0.900 6 C -0.122 4.122 7 N -0.520 5.520 8 Si 0.697 3.303 9 H -0.198 1.198 10 H -0.181 1.181 11 H -0.210 1.210 12 N -0.309 5.309 13 C 0.275 3.725 14 O -0.414 6.414 15 C 0.295 3.705 16 O -0.369 6.369 17 N -0.298 5.298 18 C 0.032 3.968 19 C -0.103 4.103 20 C -0.115 4.115 21 C -0.054 4.054 22 Cl -0.030 7.030 23 C -0.146 4.146 24 C 0.066 3.934 25 F -0.105 7.105 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.244 0.756 31 H 0.267 0.733 32 H 0.174 0.826 33 H 0.164 0.836 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.992 -1.817 -23.585 23.676 hybrid contribution 0.163 1.145 0.075 1.159 sum 1.154 -0.671 -23.510 23.548 Atomic orbital electron populations 1.22318 0.97945 1.00555 1.00265 1.19301 0.91306 0.94365 0.81975 0.92966 1.20953 1.46263 0.98556 0.91740 0.89961 1.24866 0.93631 0.98489 0.95207 1.69871 1.45956 1.36497 0.99718 0.86971 0.79950 0.85567 0.77801 1.19761 1.18131 1.20972 1.46455 1.61056 1.14863 1.08512 1.19632 0.81151 0.87298 0.84455 1.90744 1.50881 1.15115 1.84615 1.20962 0.77739 0.87263 0.84523 1.90768 1.45831 1.15533 1.84754 1.43182 1.67469 1.13496 1.05639 1.17844 0.97648 0.94143 0.87173 1.21094 0.99276 0.92612 0.97354 1.21026 0.97419 1.00989 0.92057 1.20582 1.01323 0.93022 0.90492 1.98388 1.91946 1.76907 1.35723 1.20789 1.02618 0.93858 0.97341 1.17209 0.98664 0.81431 0.96132 1.91544 1.87737 1.36075 1.95156 0.92063 0.95029 0.93157 0.92062 0.75625 0.73331 0.82634 0.83595 0.83138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.10 37.16 0.34 -2.81 16 2 C 0.23 5.27 2.12 -69.08 -0.15 5.12 16 3 H 0.05 1.27 5.34 -51.93 -0.28 0.99 16 4 C -0.54 -14.01 9.06 -34.44 -0.31 -14.32 16 5 H 0.08 2.28 8.02 -52.48 -0.42 1.86 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.88 -25.46 13.96 55.43 0.77 -24.68 16 8 Si 0.87 20.51 26.20 -169.99 -4.45 16.06 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.26 -5.82 6.15 56.52 0.35 -5.47 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.66 -12.94 5.06 -55.40 -0.28 -13.22 16 13 C 0.50 9.02 7.85 -11.64 -0.09 8.93 16 14 O -0.53 -10.70 16.15 5.48 0.09 -10.61 16 15 C 0.51 7.84 7.61 -11.64 -0.09 7.76 16 16 O -0.50 -8.05 14.23 5.47 0.08 -7.97 16 17 N -0.65 -8.32 5.21 -10.24 -0.05 -8.37 16 18 C 0.13 1.48 6.27 -83.63 -0.52 0.95 16 19 C -0.08 -0.87 8.65 -39.39 -0.34 -1.21 16 20 C -0.10 -0.83 9.82 -39.57 -0.39 -1.21 16 21 C -0.03 -0.23 6.32 -39.47 -0.25 -0.48 16 22 Cl -0.06 -0.46 28.95 -51.86 -1.50 -1.96 16 23 C -0.13 -1.11 9.80 -39.51 -0.39 -1.49 16 24 C 0.09 0.92 7.31 -39.24 -0.29 0.63 16 25 F -0.13 -1.41 16.95 2.25 0.04 -1.37 16 26 H 0.06 1.29 6.74 -51.93 -0.35 0.94 16 27 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.41 7.52 8.03 -40.82 -0.33 7.19 16 31 H 0.43 5.06 8.13 -40.82 -0.33 4.73 16 32 H 0.16 1.71 6.48 -52.49 -0.34 1.37 16 33 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -29.11 319.90 -5.99 -35.10 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -2.93 Total: 8.19 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -2.57 Total: 4.01 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.44 Total: -46.27 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.17 Total: -18.58 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.45 Total: 16.06 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.50 Total: -1.96 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.11 -5.99 -35.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122994626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.785 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds