Wall clock time and date at job start Tue Mar 31 2020 10:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46915 * 2 1 4 4 C 1.50702 * 109.46989 * 119.99561 * 2 1 3 5 5 H 1.08003 * 119.99780 * 94.83985 * 4 2 1 6 6 C 1.37872 * 119.99959 * 274.83649 * 4 2 1 7 7 N 1.31513 * 119.99780 * 174.92135 * 6 4 2 8 8 Si 1.86804 * 120.00461 * 354.92478 * 6 4 2 9 9 H 1.48498 * 109.46880 * 275.04235 * 8 6 4 10 10 H 1.48501 * 109.46614 * 35.04005 * 8 6 4 11 11 H 1.48496 * 109.47149 * 155.03834 * 8 6 4 12 12 N 1.46496 * 109.47342 * 240.00040 * 2 1 3 13 13 C 1.34770 * 120.00373 * 84.99629 * 12 2 1 14 14 O 1.21368 * 120.00181 * 0.02562 * 13 12 2 15 15 C 1.49340 * 120.00439 * 180.02562 * 13 12 2 16 16 O 1.21384 * 119.99610 * 0.02562 * 15 13 12 17 17 N 1.34770 * 120.00439 * 179.97438 * 15 13 12 18 18 C 1.39861 * 120.00356 * 185.66410 * 17 15 13 19 19 C 1.38875 * 120.07252 * 34.00403 * 18 17 15 20 20 C 1.38116 * 119.96139 * 179.72640 * 19 18 17 21 21 C 1.38399 * 120.10426 * 0.57519 * 20 19 18 22 22 Cl 1.73602 * 119.92703 * 179.71921 * 21 20 19 23 23 C 1.38377 * 120.14820 * 359.70266 * 21 20 19 24 24 C 1.38293 * 120.03346 * 359.97438 * 23 21 20 25 25 F 1.35104 * 120.04843 * 180.02562 * 24 23 21 26 26 H 1.09003 * 109.47295 * 294.99236 * 1 2 3 27 27 H 1.09009 * 109.47336 * 54.99241 * 1 2 3 28 28 H 1.08997 * 109.46997 * 174.98921 * 1 2 3 29 29 H 0.97003 * 120.00047 * 180.02562 * 7 6 4 30 30 H 0.97006 * 119.99823 * 265.00461 * 12 2 1 31 31 H 0.97002 * 120.00089 * 5.66199 * 17 15 13 32 32 H 1.08002 * 120.01651 * 0.02562 * 19 18 17 33 33 H 1.07997 * 119.94561 * 180.27728 * 20 19 18 34 34 H 1.07994 * 119.98399 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.2867 -1.7589 1.1827 6 6 2.1671 -0.0216 2.4173 7 7 2.5093 -0.6619 3.5139 8 14 1.8638 1.8209 2.4677 9 1 3.1036 2.5376 2.0747 10 1 0.7708 2.1685 1.5244 11 1 1.4757 2.2212 3.8441 12 7 2.0184 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8588 1.1594 -2.4116 15 6 2.6444 -0.7224 -3.5766 16 8 2.9322 -1.9004 -3.5222 17 7 2.7726 -0.0503 -4.7377 18 6 3.1241 -0.7337 -5.9062 19 6 2.6840 -2.0350 -6.1105 20 6 3.0278 -2.7057 -7.2679 21 6 3.8202 -2.0873 -8.2193 22 17 4.2556 -2.9372 -9.6690 23 6 4.2659 -0.7929 -8.0177 24 6 3.9197 -0.1134 -6.8640 25 9 4.3543 1.1506 -6.6671 26 1 -0.3634 0.4342 0.9315 27 1 -0.3634 0.5896 -0.8418 28 1 -0.3633 -1.0237 -0.0898 29 1 2.6038 -0.1775 4.3489 30 1 2.2490 -1.6318 -1.1525 31 1 2.6210 0.9075 -4.7630 32 1 2.0693 -2.5204 -5.3670 33 1 2.6817 -3.7160 -7.4285 34 1 4.8838 -0.3127 -8.7620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122994626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:37 Heat of formation + Delta-G solvation = -112.528892 kcal Electronic energy + Delta-G solvation = -22830.445045 eV Core-core repulsion = 18896.116503 eV Total energy + Delta-G solvation = -3934.328542 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.13825 -42.20060 -40.53490 -39.40935 -37.64205 -37.09492 -35.96699 -34.42057 -31.99867 -31.80061 -30.75873 -27.34426 -26.52387 -24.52822 -23.65345 -22.32615 -21.41491 -20.46017 -19.23984 -18.62482 -18.54681 -17.79485 -17.35492 -17.28026 -16.74768 -16.71577 -16.36971 -15.92353 -15.37177 -15.17131 -14.99424 -14.63295 -14.55582 -14.32582 -14.25028 -13.53545 -13.41507 -13.24608 -13.14658 -12.91642 -12.76881 -12.59929 -12.34396 -12.05054 -11.82906 -11.46774 -11.31452 -10.88483 -10.77837 -10.12235 -10.11940 -9.37833 -8.39141 -6.47401 -0.45517 -0.08154 0.33094 0.92263 1.12235 1.33689 1.37380 1.46532 1.96760 2.27702 2.30612 2.49320 2.92675 2.98339 3.34547 3.50991 3.82226 3.91311 4.18456 4.37882 4.38738 4.68548 4.74215 4.75982 4.81608 4.94931 4.99790 5.01547 5.20984 5.41551 5.47595 5.50760 5.68476 6.02308 6.37184 6.53488 6.63884 6.91679 7.20703 8.75798 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.002695 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.653085 B =10387.151186 C =10811.292575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.236 3.764 3 H 0.041 0.959 4 C -0.536 4.536 5 H 0.054 0.946 6 C 0.032 3.968 7 N -0.930 5.930 8 Si 0.926 3.074 9 H -0.273 1.273 10 H -0.241 1.241 11 H -0.279 1.279 12 N -0.666 5.666 13 C 0.500 3.500 14 O -0.551 6.551 15 C 0.523 3.477 16 O -0.508 6.508 17 N -0.638 5.638 18 C 0.105 3.895 19 C -0.089 4.089 20 C -0.088 4.088 21 C -0.024 4.024 22 Cl -0.046 7.046 23 C -0.119 4.119 24 C 0.083 3.917 25 F -0.132 7.132 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.272 0.728 30 H 0.413 0.587 31 H 0.432 0.568 32 H 0.150 0.850 33 H 0.168 0.832 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 -1.403 -26.272 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.133 3.867 3 H 0.059 0.941 4 C -0.574 4.574 5 H 0.072 0.928 6 C -0.168 4.168 7 N -0.568 5.568 8 Si 0.750 3.250 9 H -0.199 1.199 10 H -0.164 1.164 11 H -0.204 1.204 12 N -0.315 5.315 13 C 0.279 3.721 14 O -0.431 6.431 15 C 0.305 3.695 16 O -0.381 6.381 17 N -0.286 5.286 18 C 0.010 3.990 19 C -0.109 4.109 20 C -0.107 4.107 21 C -0.051 4.051 22 Cl -0.017 7.017 23 C -0.139 4.139 24 C 0.061 3.939 25 F -0.111 7.111 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.249 0.751 31 H 0.271 0.729 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.819 -1.415 -26.085 26.136 hybrid contribution 0.267 0.920 0.657 1.161 sum 1.086 -0.495 -25.428 25.456 Atomic orbital electron populations 1.22214 0.96202 1.01498 1.00619 1.19067 0.92525 0.93317 0.81758 0.94149 1.21148 1.45440 0.97570 0.93256 0.92756 1.25612 0.93680 1.02651 0.94890 1.69985 1.48061 1.38292 1.00467 0.86085 0.80181 0.80459 0.78302 1.19870 1.16418 1.20411 1.46212 1.61783 1.15076 1.08460 1.19974 0.80239 0.87003 0.84848 1.90728 1.51344 1.15920 1.85085 1.20209 0.78145 0.86868 0.84278 1.90772 1.46785 1.15749 1.84834 1.42994 1.66596 1.13606 1.05359 1.18014 0.99212 0.94797 0.86954 1.21115 0.99497 0.92317 0.98012 1.21242 0.96614 1.01742 0.91124 1.20689 1.00668 0.92994 0.90777 1.98402 1.91774 1.76598 1.34897 1.21004 1.02127 0.93819 0.96964 1.17292 0.98794 0.81325 0.96461 1.91531 1.87826 1.36467 1.95249 0.92497 0.93610 0.92197 0.91912 0.75078 0.72881 0.83262 0.81412 0.81103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.88 9.10 71.98 0.66 -5.22 16 2 C 0.24 10.60 2.12 44.25 0.09 10.70 16 3 H 0.04 1.92 5.34 -2.39 -0.01 1.91 16 4 C -0.54 -28.34 9.06 25.60 0.23 -28.11 16 5 H 0.05 3.11 8.02 -2.91 -0.02 3.09 16 6 C 0.03 1.77 5.47 84.65 0.46 2.23 16 7 N -0.93 -54.62 13.96 21.45 0.30 -54.32 16 8 Si 0.93 42.12 26.20 68.60 1.80 43.91 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 10 H -0.24 -10.23 6.15 99.48 0.61 -9.62 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 N -0.67 -25.91 5.06 -447.55 -2.27 -28.18 16 13 C 0.50 17.80 7.85 87.24 0.68 18.48 16 14 O -0.55 -21.50 16.15 -3.30 -0.05 -21.55 16 15 C 0.52 15.61 7.61 87.24 0.66 16.28 16 16 O -0.51 -16.11 14.23 -3.35 -0.05 -16.15 16 17 N -0.64 -15.70 5.21 -304.65 -1.59 -17.29 16 18 C 0.11 2.29 6.27 38.22 0.24 2.53 16 19 C -0.09 -1.74 8.65 22.39 0.19 -1.55 16 20 C -0.09 -1.31 9.82 22.28 0.22 -1.10 16 21 C -0.02 -0.35 6.32 22.34 0.14 -0.20 16 22 Cl -0.05 -0.59 28.95 -2.72 -0.08 -0.67 16 23 C -0.12 -1.80 9.80 22.32 0.22 -1.58 16 24 C 0.08 1.61 7.31 22.49 0.16 1.77 16 25 F -0.13 -2.75 16.95 44.97 0.76 -1.99 16 26 H 0.06 2.31 6.74 -2.39 -0.02 2.29 16 27 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.41 15.29 8.03 -92.70 -0.74 14.54 16 31 H 0.43 9.82 8.13 -92.71 -0.75 9.06 16 32 H 0.15 3.12 6.48 -2.91 -0.02 3.10 16 33 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -61.77 319.90 2.39 -59.38 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.40 Total: 22.63 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 3.97 Total: 14.23 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -3.55 Total: -99.79 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.10 Total: -37.71 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.76 Total: -1.99 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.80 Total: 43.91 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -61.77 2.39 -59.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122994626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.149 kcal (2) G-P(sol) polarization free energy of solvation -61.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds