Wall clock time and date at job start Tue Mar 31 2020 10:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46727 * 2 1 4 4 C 1.50692 * 109.47134 * 120.00126 * 2 1 3 5 5 H 1.08001 * 120.00569 * 114.34790 * 4 2 1 6 6 C 1.37882 * 120.00054 * 294.34530 * 4 2 1 7 7 N 1.31515 * 120.00333 * 158.27505 * 6 4 2 8 8 Si 1.86806 * 119.99761 * 338.54963 * 6 4 2 9 9 H 1.48503 * 109.47045 * 269.72138 * 8 6 4 10 10 H 1.48501 * 109.47167 * 29.72317 * 8 6 4 11 11 H 1.48495 * 109.46986 * 149.72450 * 8 6 4 12 12 N 1.46503 * 109.46943 * 240.00139 * 2 1 3 13 13 C 1.34776 * 120.00095 * 84.99769 * 12 2 1 14 14 O 1.21359 * 120.00029 * 359.97438 * 13 12 2 15 15 C 1.49350 * 119.99822 * 179.97438 * 13 12 2 16 16 O 1.21381 * 120.00000 * 0.02562 * 15 13 12 17 17 N 1.34779 * 120.00212 * 180.02562 * 15 13 12 18 18 C 1.39723 * 120.00175 * 185.21318 * 17 15 13 19 19 C 1.38915 * 120.05863 * 31.08396 * 18 17 15 20 20 C 1.38298 * 119.92896 * 179.97438 * 19 18 17 21 21 F 1.35097 * 119.98411 * 179.97438 * 20 19 18 22 22 C 1.38523 * 120.03556 * 0.02562 * 20 19 18 23 23 C 1.38352 * 120.11376 * 359.97438 * 22 20 19 24 24 Cl 1.73602 * 119.96303 * 179.97438 * 23 22 20 25 25 C 1.38244 * 120.07258 * 359.70140 * 23 22 20 26 26 H 1.08991 * 109.46993 * 293.82402 * 1 2 3 27 27 H 1.08993 * 109.47113 * 53.83046 * 1 2 3 28 28 H 1.09006 * 109.47012 * 173.82681 * 1 2 3 29 29 H 0.97001 * 119.99558 * 355.20815 * 7 6 4 30 30 H 0.97003 * 119.99698 * 264.99575 * 12 2 1 31 31 H 0.97002 * 119.99499 * 5.20707 * 17 15 13 32 32 H 1.08008 * 120.03552 * 359.95294 * 19 18 17 33 33 H 1.08001 * 119.94362 * 179.97438 * 22 20 19 34 34 H 1.08001 * 120.01991 * 180.26959 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5759 -1.6387 1.1340 6 6 1.7981 -0.1753 2.4794 7 7 1.8352 -0.9476 3.5432 8 14 1.4203 1.6453 2.6596 9 1 2.6863 2.3965 2.8549 10 1 0.7392 2.1332 1.4335 11 1 0.5351 1.8532 3.8336 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8579 1.1591 -2.4118 15 6 2.6453 -0.7222 -3.5765 16 8 2.9340 -1.8999 -3.5219 17 7 2.7745 -0.0498 -4.7374 18 6 3.1358 -0.7308 -5.9027 19 6 2.7564 -2.0552 -6.0807 20 6 3.1150 -2.7265 -7.2354 21 9 2.7470 -4.0146 -7.4095 22 6 3.8523 -2.0790 -8.2133 23 6 4.2310 -0.7600 -8.0377 24 17 5.1555 0.0474 -9.2653 25 6 3.8693 -0.0825 -6.8882 26 1 -0.3633 0.4151 0.9400 27 1 -0.3633 0.6065 -0.8296 28 1 -0.3633 -1.0218 -0.1105 29 1 1.9583 -1.9046 3.4437 30 1 2.2491 -1.6318 -1.1526 31 1 2.6165 0.9069 -4.7638 32 1 2.1822 -2.5602 -5.3180 33 1 4.1319 -2.6048 -9.1143 34 1 4.1617 0.9484 -6.7539 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123206813.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:19 Heat of formation + Delta-G solvation = -93.567408 kcal Electronic energy + Delta-G solvation = -22700.105827 eV Core-core repulsion = 18766.599517 eV Total energy + Delta-G solvation = -3933.506310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.26326 -41.16398 -39.44577 -38.24206 -36.95074 -35.62118 -34.80019 -32.58098 -30.92443 -30.34008 -29.87719 -25.55596 -24.87222 -23.47120 -22.74217 -20.89739 -19.88570 -19.18960 -18.36752 -17.41363 -17.03307 -16.70767 -16.43428 -16.00869 -15.75152 -15.66871 -15.18168 -14.78356 -14.08168 -13.99049 -13.74704 -13.52127 -13.33548 -12.83406 -12.66944 -12.36191 -12.30464 -12.01341 -11.81862 -11.51966 -11.47873 -11.38935 -10.67377 -10.65040 -10.35031 -9.87198 -9.47090 -9.27017 -9.14049 -8.72248 -8.52607 -8.39981 -6.69783 -4.32517 0.48003 0.57523 1.48593 1.54277 2.31722 2.97043 3.33104 3.37359 3.39091 3.51688 3.64732 3.90401 4.35137 4.47788 4.51097 4.62172 4.66962 4.83950 5.03507 5.08292 5.49864 5.58578 5.68006 5.82009 6.21793 6.33715 6.35195 6.48370 6.70107 6.73230 6.98817 7.14224 7.40239 7.54263 8.08577 8.17543 8.35618 8.68686 9.34900 10.69637 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.026319 B = 0.002711 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.631434 B =10325.520981 C =10977.471527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.240 3.760 3 H 0.049 0.951 4 C -0.629 4.629 5 H 0.066 0.934 6 C 0.046 3.954 7 N -0.887 5.887 8 Si 1.036 2.964 9 H -0.282 1.282 10 H -0.270 1.270 11 H -0.282 1.282 12 N -0.659 5.659 13 C 0.496 3.504 14 O -0.533 6.533 15 C 0.510 3.490 16 O -0.495 6.495 17 N -0.649 5.649 18 C 0.198 3.802 19 C -0.159 4.159 20 C 0.138 3.862 21 F -0.127 7.127 22 C -0.166 4.166 23 C 0.014 3.986 24 Cl -0.052 7.052 25 C -0.149 4.149 26 H 0.060 0.940 27 H 0.031 0.969 28 H 0.047 0.953 29 H 0.273 0.727 30 H 0.407 0.593 31 H 0.429 0.571 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.952 0.985 -23.932 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.138 3.862 3 H 0.067 0.933 4 C -0.667 4.667 5 H 0.084 0.916 6 C -0.162 4.162 7 N -0.519 5.519 8 Si 0.862 3.138 9 H -0.208 1.208 10 H -0.195 1.195 11 H -0.208 1.208 12 N -0.308 5.308 13 C 0.275 3.725 14 O -0.412 6.412 15 C 0.293 3.707 16 O -0.367 6.367 17 N -0.296 5.296 18 C 0.101 3.899 19 C -0.180 4.180 20 C 0.118 3.882 21 F -0.106 7.106 22 C -0.187 4.187 23 C -0.014 4.014 24 Cl -0.023 7.023 25 C -0.170 4.170 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.242 0.758 31 H 0.268 0.732 32 H 0.176 0.824 33 H 0.166 0.834 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.685 2.176 -22.752 23.013 hybrid contribution 0.436 -1.471 -1.249 1.979 sum 3.121 0.705 -24.002 24.214 Atomic orbital electron populations 1.22388 0.98260 1.00319 1.00223 1.19329 0.90982 0.94415 0.81480 0.93298 1.22002 1.42501 1.11474 0.90685 0.91640 1.25671 0.93043 1.05920 0.91549 1.70824 1.42595 1.06906 1.31560 0.84154 0.77735 0.75437 0.76472 1.20794 1.19530 1.20775 1.46303 1.61017 1.14769 1.08698 1.19601 0.81224 0.87294 0.84425 1.90740 1.50872 1.15054 1.84556 1.21003 0.77734 0.87248 0.84685 1.90774 1.45600 1.15593 1.84741 1.43242 1.66984 1.13567 1.05792 1.17165 0.94658 0.91668 0.86377 1.21283 1.03610 0.94916 0.98194 1.17108 0.97485 0.79386 0.94225 1.91551 1.89507 1.34087 1.95406 1.20926 1.02536 0.94166 1.01035 1.20166 0.97508 0.92485 0.91220 1.98399 1.71667 1.79058 1.53156 1.20782 1.00839 1.02022 0.93359 0.92150 0.94965 0.93413 0.91715 0.75773 0.73192 0.82445 0.83441 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.93 37.16 0.33 -2.93 16 2 C 0.24 5.48 2.11 -69.08 -0.15 5.34 16 3 H 0.05 1.18 5.97 -51.93 -0.31 0.87 16 4 C -0.63 -16.45 8.96 -34.44 -0.31 -16.75 16 5 H 0.07 1.81 7.96 -52.49 -0.42 1.39 16 6 C 0.05 1.26 5.23 -17.82 -0.09 1.16 16 7 N -0.89 -25.64 13.70 55.43 0.76 -24.88 16 8 Si 1.04 23.79 26.36 -169.99 -4.48 19.31 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.27 -5.82 5.94 56.52 0.34 -5.48 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 N -0.66 -12.99 5.06 -55.40 -0.28 -13.27 16 13 C 0.50 8.83 7.85 -11.63 -0.09 8.74 16 14 O -0.53 -10.30 16.15 5.49 0.09 -10.21 16 15 C 0.51 7.60 7.64 -11.63 -0.09 7.51 16 16 O -0.49 -8.11 14.00 5.47 0.08 -8.03 16 17 N -0.65 -7.50 5.33 -10.31 -0.05 -7.56 16 18 C 0.20 2.14 6.32 -83.77 -0.53 1.61 16 19 C -0.16 -1.86 8.64 -39.31 -0.34 -2.20 16 20 C 0.14 1.47 7.30 -39.45 -0.29 1.18 16 21 F -0.13 -1.43 17.27 2.25 0.04 -1.39 16 22 C -0.17 -1.48 9.81 -39.43 -0.39 -1.86 16 23 C 0.01 0.12 6.32 -39.54 -0.25 -0.13 16 24 Cl -0.05 -0.40 28.95 -51.86 -1.50 -1.90 16 25 C -0.15 -1.32 9.74 -39.33 -0.38 -1.70 16 26 H 0.06 1.30 5.71 -51.93 -0.30 1.00 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.27 7.82 8.73 -40.82 -0.36 7.46 16 30 H 0.41 7.66 7.99 -40.82 -0.33 7.33 16 31 H 0.43 4.15 8.29 -40.82 -0.34 3.81 16 32 H 0.16 2.05 6.24 -52.48 -0.33 1.72 16 33 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -29.03 319.09 -6.04 -35.07 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -2.93 Total: 8.09 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -2.57 Total: -0.04 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.42 Total: -45.71 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.17 Total: -18.25 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -4.48 Total: 19.31 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.03 -6.04 -35.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123206813.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.495 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds