Wall clock time and date at job start Tue Mar 31 2020 10:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99887 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99446 * 3 2 1 7 7 C 1.38798 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99325 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00523 * 0.02562 * 7 2 1 10 10 C 1.80993 * 99.99993 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47026 * 179.97438 * 10 9 7 12 12 O 1.20821 * 120.00202 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00143 * 179.97438 * 11 10 9 14 14 C 1.45192 * 117.00255 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47122 * 29.99976 * 14 13 11 16 16 C 1.52995 * 109.47453 * 150.00089 * 14 13 11 17 17 H 1.08998 * 110.27873 * 185.63788 * 16 14 13 18 18 C 1.54952 * 110.30837 * 307.83601 * 16 14 13 19 19 C 1.55311 * 100.94159 * 155.35941 * 18 16 14 20 20 C 1.54377 * 102.25178 * 325.86569 * 19 18 16 21 21 O 1.43236 * 107.59089 * 21.35836 * 20 19 18 22 22 C 1.52994 * 109.47175 * 270.00343 * 14 13 11 23 23 F 1.39897 * 109.47672 * 59.99671 * 22 14 13 24 24 F 1.39903 * 109.47485 * 179.97438 * 22 14 13 25 25 F 1.39905 * 109.47212 * 299.99480 * 22 14 13 26 26 H 0.97005 * 119.99723 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47224 * 299.99934 * 10 9 7 28 28 H 1.09006 * 109.47317 * 59.99980 * 10 9 7 29 29 H 1.09001 * 111.12657 * 273.27519 * 18 16 14 30 30 H 1.08996 * 111.12599 * 37.43987 * 18 16 14 31 31 H 1.09002 * 110.84631 * 207.67611 * 19 18 16 32 32 H 1.08998 * 111.02455 * 84.13433 * 19 18 16 33 33 H 1.08997 * 109.83089 * 261.84498 * 20 19 18 34 34 H 1.08996 * 109.90881 * 140.91390 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1042 1.6962 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7954 -5.5016 0.0011 13 8 2.8404 -6.3390 0.0008 14 6 2.2607 -7.6702 0.0008 15 1 1.2995 -7.6480 -0.5126 16 6 3.2022 -8.6365 -0.7208 17 1 2.7363 -9.6173 -0.8162 18 6 3.5780 -8.0792 -2.1169 19 6 4.9353 -8.7928 -2.3635 20 6 5.5302 -8.8660 -0.9409 21 8 4.4470 -8.7427 -0.0118 22 6 2.0576 -8.1379 1.4433 23 9 1.1967 -7.2544 2.1033 24 9 1.4985 -9.4204 1.4435 25 9 3.2913 -8.1665 2.1024 26 1 -0.4850 0.8401 -0.0004 27 1 3.1243 -3.7314 -0.8895 28 1 3.1243 -3.7314 0.8906 29 1 2.8409 -8.3673 -2.8664 30 1 3.7030 -6.9968 -2.0872 31 1 5.5718 -8.1995 -3.0201 32 1 4.7833 -9.7917 -2.7723 33 1 6.2382 -8.0504 -0.7937 34 1 6.0331 -9.8223 -0.7976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158888611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:22 Heat of formation + Delta-G solvation = -282.968855 kcal Electronic energy + Delta-G solvation = -24927.083825 eV Core-core repulsion = 20536.718972 eV Total energy + Delta-G solvation = -4390.364854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.063 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.06176 -47.63698 -47.45004 -40.66053 -39.45596 -36.48416 -32.56788 -32.52248 -32.15944 -29.66279 -27.78389 -25.60184 -23.99946 -22.13711 -22.00216 -20.99539 -18.68151 -18.47072 -18.17714 -17.88038 -17.24170 -16.88017 -16.41104 -15.70926 -15.50478 -14.87931 -14.63303 -14.39589 -14.38552 -14.06459 -13.96292 -13.84209 -13.64824 -13.60675 -13.47119 -13.11459 -12.71596 -12.63164 -12.25163 -12.07307 -11.68019 -11.59564 -11.21021 -11.15172 -11.08698 -10.86739 -10.75233 -10.28971 -9.97730 -9.83389 -9.14225 -8.43201 -6.65786 -6.30902 -4.04529 2.12241 2.32184 2.70263 3.16520 3.19897 3.24783 3.25410 3.36736 3.60059 3.76920 4.10357 4.15075 4.19146 4.42803 4.53480 4.68798 4.75748 4.76848 4.91426 5.05138 5.11679 5.37045 5.38808 5.44610 5.51959 5.58160 5.67022 5.83074 5.98311 6.28174 6.61686 7.51539 7.86971 8.26323 9.14537 10.76517 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.003640 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.675791 B = 7690.862468 C = 8433.898990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.076 3.924 3 Si 0.922 3.078 4 H -0.282 1.282 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.076 0.924 9 S -0.054 6.054 10 C -0.126 4.126 11 C 0.473 3.527 12 O -0.471 6.471 13 O -0.326 6.326 14 C 0.047 3.953 15 H 0.137 0.863 16 C 0.082 3.918 17 H 0.104 0.896 18 C -0.149 4.149 19 C -0.153 4.153 20 C 0.051 3.949 21 O -0.361 6.361 22 C 0.441 3.559 23 F -0.172 7.172 24 F -0.180 7.180 25 F -0.161 7.161 26 H 0.271 0.729 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.154 -19.352 -3.996 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.134 4.134 3 Si 0.748 3.252 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.686 4.686 8 H 0.094 0.906 9 S 0.173 5.827 10 C -0.274 4.274 11 C 0.314 3.686 12 O -0.355 6.355 13 O -0.244 6.244 14 C -0.011 4.011 15 H 0.155 0.845 16 C 0.024 3.976 17 H 0.121 0.879 18 C -0.186 4.186 19 C -0.190 4.190 20 C -0.025 4.025 21 O -0.280 6.280 22 C 0.386 3.614 23 F -0.153 7.153 24 F -0.161 7.161 25 F -0.142 7.142 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.510 -19.528 -3.733 21.252 hybrid contribution 1.701 1.107 0.094 2.031 sum 9.211 -18.421 -3.639 20.915 Atomic orbital electron populations 1.69999 1.06000 1.27834 1.46353 1.24998 0.95062 0.99109 0.94224 0.86169 0.79213 0.80891 0.78941 1.20746 1.19787 1.19825 1.22795 0.95012 0.91071 1.59742 0.90560 1.85451 1.03860 0.96500 1.96914 1.23325 1.07340 0.89929 1.06781 1.23714 0.85466 0.87230 0.72237 1.90700 1.16540 1.84977 1.43261 1.86829 1.40147 1.12753 1.84631 1.23981 1.01824 0.83538 0.91788 0.84538 1.23125 0.86476 0.96366 0.91592 0.87880 1.23278 0.97632 1.02748 0.94942 1.23105 0.96620 1.01601 0.97695 1.23155 0.89946 1.01750 0.87672 1.88578 1.13779 1.94613 1.31054 1.20685 0.74812 0.75477 0.90392 1.93283 1.70590 1.68330 1.83121 1.93174 1.85696 1.40289 1.96955 1.93257 1.42096 1.96022 1.82820 0.91951 0.87626 0.87551 0.89165 0.88704 0.89491 0.90346 0.90796 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.42 13.22 55.49 0.73 -24.69 16 2 C 0.08 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 8 H 0.08 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.05 -1.39 20.57 -107.50 -2.21 -3.60 16 10 C -0.13 -2.48 6.27 36.01 0.23 -2.26 16 11 C 0.47 8.67 7.48 36.01 0.27 8.94 16 12 O -0.47 -9.77 14.28 -18.75 -0.27 -10.04 16 13 O -0.33 -4.99 8.64 -41.90 -0.36 -5.35 16 14 C 0.05 0.61 2.08 -26.74 -0.06 0.56 16 15 H 0.14 1.66 7.16 -51.93 -0.37 1.29 16 16 C 0.08 0.84 3.14 -25.70 -0.08 0.76 16 17 H 0.10 0.83 8.00 -51.93 -0.42 0.42 16 18 C -0.15 -1.24 6.51 -24.48 -0.16 -1.40 16 19 C -0.15 -1.01 7.02 -24.78 -0.17 -1.19 16 20 C 0.05 0.43 7.79 37.88 0.30 0.73 16 21 O -0.36 -4.24 9.12 -38.34 -0.35 -4.59 16 22 C 0.44 6.39 2.85 37.15 0.11 6.49 16 23 F -0.17 -2.94 15.97 2.25 0.04 -2.90 16 24 F -0.18 -2.33 16.93 2.25 0.04 -2.29 16 25 F -0.16 -2.47 15.42 2.25 0.03 -2.44 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.11 1.87 8.14 -51.92 -0.42 1.45 16 28 H 0.11 1.99 8.14 -51.91 -0.42 1.57 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.94 7.10 -51.93 -0.37 0.57 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 318.51 15.07 4.80 4.80 Total: -1.00 -32.29 318.51 -5.61 -37.90 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -3.66 Total: -2.74 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 0.62 Total: 0.11 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.73 Total: -24.69 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.98 Total: -19.99 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 0.11 Total: -7.64 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.21 Total: -3.60 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.29 -5.61 -37.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158888611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -245.069 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -282.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds