Wall clock time and date at job start Tue Mar 31 2020 10:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99887 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99446 * 3 2 1 7 7 C 1.38798 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99325 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00523 * 0.02562 * 7 2 1 10 10 C 1.80993 * 99.99993 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47026 * 179.97438 * 10 9 7 12 12 O 1.20821 * 120.00202 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00143 * 179.97438 * 11 10 9 14 14 C 1.45192 * 117.00255 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47122 * 29.99976 * 14 13 11 16 16 C 1.52995 * 109.47453 * 150.00089 * 14 13 11 17 17 H 1.08998 * 110.27873 * 185.63788 * 16 14 13 18 18 C 1.54952 * 110.30837 * 307.83601 * 16 14 13 19 19 C 1.55311 * 100.94159 * 155.35941 * 18 16 14 20 20 C 1.54377 * 102.25178 * 325.86569 * 19 18 16 21 21 O 1.43236 * 107.59089 * 21.35836 * 20 19 18 22 22 C 1.52994 * 109.47175 * 270.00343 * 14 13 11 23 23 F 1.39897 * 109.47672 * 59.99671 * 22 14 13 24 24 F 1.39903 * 109.47485 * 179.97438 * 22 14 13 25 25 F 1.39905 * 109.47212 * 299.99480 * 22 14 13 26 26 H 0.97005 * 119.99723 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47224 * 299.99934 * 10 9 7 28 28 H 1.09006 * 109.47317 * 59.99980 * 10 9 7 29 29 H 1.09001 * 111.12657 * 273.27519 * 18 16 14 30 30 H 1.08996 * 111.12599 * 37.43987 * 18 16 14 31 31 H 1.09002 * 110.84631 * 207.67611 * 19 18 16 32 32 H 1.08998 * 111.02455 * 84.13433 * 19 18 16 33 33 H 1.08997 * 109.83089 * 261.84498 * 20 19 18 34 34 H 1.08996 * 109.90881 * 140.91390 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1042 1.6962 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7954 -5.5016 0.0011 13 8 2.8404 -6.3390 0.0008 14 6 2.2607 -7.6702 0.0008 15 1 1.2995 -7.6480 -0.5126 16 6 3.2022 -8.6365 -0.7208 17 1 2.7363 -9.6173 -0.8162 18 6 3.5780 -8.0792 -2.1169 19 6 4.9353 -8.7928 -2.3635 20 6 5.5302 -8.8660 -0.9409 21 8 4.4470 -8.7427 -0.0118 22 6 2.0576 -8.1379 1.4433 23 9 1.1967 -7.2544 2.1033 24 9 1.4985 -9.4204 1.4435 25 9 3.2913 -8.1665 2.1024 26 1 -0.4850 0.8401 -0.0004 27 1 3.1243 -3.7314 -0.8895 28 1 3.1243 -3.7314 0.8906 29 1 2.8409 -8.3673 -2.8664 30 1 3.7030 -6.9968 -2.0872 31 1 5.5718 -8.1995 -3.0201 32 1 4.7833 -9.7917 -2.7723 33 1 6.2382 -8.0504 -0.7937 34 1 6.0331 -9.8223 -0.7976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158888611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:21 Heat of formation + Delta-G solvation = -302.403818 kcal Electronic energy + Delta-G solvation = -24927.926589 eV Core-core repulsion = 20536.718972 eV Total energy + Delta-G solvation = -4391.207617 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.063 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.24381 -48.81705 -48.66047 -41.93269 -40.34300 -37.83496 -34.61126 -33.47268 -32.96786 -31.14596 -28.67515 -27.70762 -25.02421 -23.28717 -22.62641 -22.09732 -20.12750 -19.72294 -19.54838 -19.31832 -18.51865 -17.76909 -17.51313 -16.99743 -16.89291 -16.53810 -16.09653 -15.61845 -15.54883 -15.33536 -15.15895 -14.86308 -14.83849 -14.71567 -14.61402 -14.40714 -14.26828 -13.76923 -13.50107 -13.19541 -12.87592 -12.73746 -12.70240 -12.65264 -12.21265 -11.96037 -11.82559 -11.75973 -11.73147 -11.14492 -10.59069 -10.40441 -8.74286 -8.37553 -6.17475 0.73045 0.89157 1.37570 1.45176 1.49009 1.53970 1.68321 2.23481 2.37484 2.58664 2.75293 2.97918 2.99464 3.24221 3.41004 3.56107 3.60168 3.81067 3.95123 4.11943 4.13761 4.22492 4.36987 4.39307 4.79067 4.87489 4.88621 4.96713 5.02258 5.25797 5.41085 5.92072 6.17767 6.43494 7.04430 8.71338 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.003640 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.675791 B = 7690.862468 C = 8433.898990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.019 3.981 3 Si 0.998 3.002 4 H -0.279 1.279 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.550 4.550 8 H 0.087 0.913 9 S -0.130 6.130 10 C -0.107 4.107 11 C 0.483 3.517 12 O -0.499 6.499 13 O -0.317 6.317 14 C 0.044 3.956 15 H 0.146 0.854 16 C 0.082 3.918 17 H 0.130 0.870 18 C -0.149 4.149 19 C -0.142 4.142 20 C 0.042 3.958 21 O -0.389 6.389 22 C 0.437 3.563 23 F -0.191 7.191 24 F -0.169 7.169 25 F -0.167 7.167 26 H 0.273 0.727 27 H 0.130 0.870 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.027 -20.086 -5.046 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.204 1.204 5 H -0.188 1.188 6 H -0.185 1.185 7 C -0.698 4.698 8 H 0.105 0.895 9 S 0.097 5.903 10 C -0.256 4.256 11 C 0.325 3.675 12 O -0.385 6.385 13 O -0.234 6.234 14 C -0.014 4.014 15 H 0.164 0.836 16 C 0.024 3.976 17 H 0.147 0.853 18 C -0.187 4.187 19 C -0.180 4.180 20 C -0.034 4.034 21 O -0.309 6.309 22 C 0.383 3.617 23 F -0.173 7.173 24 F -0.151 7.151 25 F -0.148 7.148 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.137 0.863 29 H 0.129 0.871 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.410 -20.289 -4.786 22.871 hybrid contribution 1.169 1.157 0.449 1.705 sum 10.579 -19.133 -4.336 22.289 Atomic orbital electron populations 1.70153 1.07915 1.28880 1.47607 1.26083 0.95935 1.03181 0.93472 0.85008 0.77828 0.75671 0.79555 1.20400 1.18828 1.18470 1.23164 0.95552 0.91552 1.59504 0.89537 1.85536 1.08666 0.98890 1.97182 1.23102 1.04622 0.89315 1.08520 1.23315 0.85076 0.87493 0.71645 1.90696 1.17703 1.85444 1.44637 1.86791 1.39238 1.13399 1.83987 1.24407 1.03397 0.82475 0.91134 0.83633 1.23367 0.85837 0.96592 0.91775 0.85254 1.23317 0.99284 1.01766 0.94327 1.23102 0.95416 1.02732 0.96718 1.23355 0.89241 1.02419 0.88349 1.88548 1.14837 1.94734 1.32788 1.20940 0.74275 0.75647 0.90850 1.93247 1.71236 1.69120 1.83682 1.93188 1.85506 1.39468 1.96926 1.93242 1.42437 1.96068 1.83094 0.91826 0.85244 0.86320 0.87074 0.90538 0.88441 0.88282 0.91315 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.17 13.22 21.65 0.29 -53.89 16 2 C 0.02 1.03 5.49 84.86 0.47 1.49 16 3 Si 1.00 42.34 29.55 68.60 2.03 44.37 16 4 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 7 C -0.55 -30.30 9.50 67.95 0.65 -29.66 16 8 H 0.09 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.13 -6.86 20.57 -56.49 -1.16 -8.03 16 10 C -0.11 -4.17 6.27 71.24 0.45 -3.72 16 11 C 0.48 17.52 7.48 71.24 0.53 18.05 16 12 O -0.50 -20.84 14.28 21.98 0.31 -20.52 16 13 O -0.32 -9.41 8.64 -48.92 -0.42 -9.83 16 14 C 0.04 1.08 2.08 30.59 0.06 1.15 16 15 H 0.15 3.37 7.16 -2.39 -0.02 3.36 16 16 C 0.08 1.48 3.14 31.26 0.10 1.58 16 17 H 0.13 1.69 8.00 -2.39 -0.02 1.67 16 18 C -0.15 -2.11 6.51 32.06 0.21 -1.90 16 19 C -0.14 -1.45 7.02 31.86 0.22 -1.22 16 20 C 0.04 0.62 7.79 72.45 0.56 1.18 16 21 O -0.39 -8.45 9.12 -146.01 -1.33 -9.78 16 22 C 0.44 12.37 2.85 71.98 0.20 12.57 16 23 F -0.19 -6.58 15.97 44.97 0.72 -5.86 16 24 F -0.17 -4.20 16.93 44.97 0.76 -3.44 16 25 F -0.17 -5.05 15.42 44.97 0.69 -4.35 16 26 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 27 H 0.13 4.40 8.14 -2.39 -0.02 4.38 16 28 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 29 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.37 7.10 -2.39 -0.02 1.36 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -70.58 318.51 6.48 -64.10 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.14 Total: 7.70 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 3.45 Total: -0.47 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.29 Total: -53.89 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.44 Total: -40.14 kcal Atomic # 9 Polarization: -15.82 SS G_CDS: 2.17 Total: -13.65 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -6.86 SS G_CDS: -1.16 Total: -8.03 kcal Total: -70.58 6.48 -64.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158888611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -238.301 kcal (2) G-P(sol) polarization free energy of solvation -70.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -308.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -302.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds