Wall clock time and date at job start Tue Mar 31 2020 10:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46671 * 2 1 4 4 C 1.50704 * 109.46717 * 240.00617 * 2 1 3 5 5 O 1.20829 * 119.99207 * 239.99368 * 4 2 1 6 6 O 1.34225 * 120.00443 * 59.99585 * 4 2 1 7 7 C 1.45190 * 117.00097 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47379 * 179.97438 * 7 6 4 9 9 C 1.50700 * 115.54757 * 65.11017 * 8 7 6 10 10 H 1.07999 * 120.00378 * 266.11087 * 9 8 7 11 11 C 1.37880 * 120.00026 * 86.11445 * 9 8 7 12 12 N 1.31517 * 120.00081 * 353.70294 * 11 9 8 13 13 Si 1.86800 * 120.00034 * 173.70411 * 11 9 8 14 14 H 1.48505 * 109.47020 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46967 * 119.99756 * 13 11 9 16 16 H 1.48500 * 109.47304 * 239.99740 * 13 11 9 17 17 C 1.53000 * 117.50342 * 279.44216 * 8 7 6 18 18 C 1.53006 * 117.50356 * 210.78050 * 8 7 6 19 19 C 1.50696 * 109.47253 * 120.00447 * 2 1 3 20 20 C 1.33350 * 125.18476 * 239.98720 * 19 2 1 21 21 C 1.38474 * 114.92788 * 179.76971 * 20 19 2 22 22 C 1.33499 * 114.88397 * 0.49832 * 21 20 19 23 23 Cl 1.73599 * 125.21193 * 179.79742 * 22 21 20 24 24 S 1.75878 * 125.19301 * 60.02463 * 19 2 1 25 25 H 1.08997 * 109.47272 * 299.99528 * 1 2 3 26 26 H 1.08997 * 109.47648 * 59.99634 * 1 2 3 27 27 H 1.09003 * 109.46993 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47524 * 300.00467 * 7 6 4 29 29 H 1.09004 * 109.46841 * 60.00691 * 7 6 4 30 30 H 0.96993 * 120.00133 * 179.97438 * 12 11 9 31 31 H 1.09003 * 117.49758 * 359.97438 * 17 8 7 32 32 H 1.08998 * 117.50297 * 145.01793 * 17 8 7 33 33 H 1.08994 * 117.49626 * 214.98221 * 18 8 7 34 34 H 1.08999 * 117.49363 * 359.97438 * 18 8 7 35 35 H 1.08005 * 122.53738 * 0.05112 * 20 19 2 36 36 H 1.08001 * 122.56042 * 180.30467 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7270 -1.6927 -1.1197 6 8 1.7079 -0.2517 -2.4497 7 6 2.2275 -0.9855 -3.5897 8 6 1.7553 -0.3191 -4.8834 9 6 2.2815 1.0718 -5.1277 10 1 1.7037 1.9300 -4.8178 11 6 3.5007 1.2488 -5.7468 12 7 4.2604 0.2086 -6.0125 13 14 4.0734 2.9659 -6.2082 14 1 3.0437 3.9565 -5.8036 15 1 5.3495 3.2662 -5.5106 16 1 4.2826 3.0401 -7.6765 17 6 0.3359 -0.6314 -5.3619 18 6 1.5402 -1.2173 -6.1033 19 6 2.0324 -0.7105 1.2304 20 6 2.8025 -0.1646 2.1723 21 6 3.1363 -1.0110 3.2161 22 6 2.6448 -2.2482 3.1154 23 17 2.8995 -3.5232 4.2656 24 16 1.6932 -2.3863 1.6427 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.3169 -0.9844 -3.5567 29 1 1.8639 -2.0126 -3.5570 30 1 5.1179 0.3331 -6.4483 31 1 -0.2613 -1.3121 -4.7551 32 1 -0.2170 0.1689 -5.8536 33 1 1.7790 -0.8021 -7.0823 34 1 1.7356 -2.2830 -5.9841 35 1 3.1366 0.8614 2.1268 36 1 3.7502 -0.6954 4.0468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175183666.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:12 Heat of formation + Delta-G solvation = -52.367798 kcal Electronic energy + Delta-G solvation = -21113.459428 eV Core-core repulsion = 17715.660091 eV Total energy + Delta-G solvation = -3397.799336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.053 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54560 -39.21893 -38.54276 -37.67253 -36.92798 -35.00248 -34.01470 -29.60840 -28.70679 -27.35952 -25.84147 -24.48303 -22.98310 -21.75150 -21.19258 -20.60331 -18.75004 -18.51771 -18.09800 -17.35130 -16.91315 -16.72795 -16.53338 -15.70933 -15.08390 -14.77789 -14.68092 -14.49078 -14.14569 -13.98372 -13.66738 -13.57749 -13.24339 -12.94654 -12.87929 -12.82451 -12.70118 -12.37660 -12.34505 -12.08930 -12.02617 -11.70514 -11.65386 -11.58606 -11.29204 -10.77036 -10.49369 -10.08857 -9.60968 -9.50016 -8.13594 -6.24856 -0.27004 0.08997 0.84045 1.19393 1.21773 1.41193 1.44370 1.50062 1.55347 1.93125 2.42924 3.15626 3.33827 3.42188 3.76067 3.97433 4.14338 4.20273 4.30240 4.38499 4.46697 4.50021 4.65652 4.76489 4.82372 4.85960 4.93345 4.97090 5.05893 5.18618 5.23119 5.32740 5.45918 5.58531 5.69496 5.75706 6.35971 6.79385 6.81445 7.44289 8.95381 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.021898 B = 0.003144 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.323474 B = 8905.034877 C = 9258.224575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 H 0.151 0.849 4 C 0.447 3.553 5 O -0.538 6.538 6 O -0.339 6.339 7 C 0.130 3.870 8 C 0.006 3.994 9 C -0.502 4.502 10 H 0.058 0.942 11 C 0.022 3.978 12 N -0.911 5.911 13 Si 0.952 3.048 14 H -0.263 1.263 15 H -0.284 1.284 16 H -0.280 1.280 17 C -0.176 4.176 18 C -0.149 4.149 19 C -0.172 4.172 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.165 4.165 23 Cl -0.014 7.014 24 S 0.151 5.849 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.260 0.740 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.176 0.824 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.537 -1.107 18.746 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 H 0.168 0.832 4 C 0.291 3.709 5 O -0.429 6.429 6 O -0.254 6.254 7 C 0.056 3.944 8 C 0.005 3.995 9 C -0.540 4.540 10 H 0.076 0.924 11 C -0.178 4.178 12 N -0.548 5.548 13 Si 0.778 3.222 14 H -0.186 1.186 15 H -0.210 1.210 16 H -0.206 1.206 17 C -0.213 4.213 18 C -0.187 4.187 19 C -0.290 4.290 20 C -0.148 4.148 21 C -0.148 4.148 22 C -0.309 4.309 23 Cl 0.015 6.985 24 S 0.415 5.585 25 H 0.122 0.878 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.194 0.806 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.975 -2.765 18.081 19.576 hybrid contribution 1.826 1.207 0.073 2.190 sum -5.149 -1.558 18.154 18.934 Atomic orbital electron populations 1.21869 0.88953 1.03294 1.05509 1.19594 0.99727 1.00283 0.83138 0.83166 1.24351 0.77386 0.82909 0.86264 1.90645 1.36854 1.27529 1.87840 1.86503 1.68602 1.55694 1.14644 1.22491 0.96963 0.92049 0.82868 1.18869 0.95561 0.95592 0.89437 1.20682 1.03811 0.90882 1.38615 0.92355 1.25738 0.96497 1.00214 0.95382 1.70119 1.11305 1.31193 1.42219 0.85592 0.78141 0.80656 0.77829 1.18647 1.21027 1.20628 1.23022 0.91093 1.02846 1.04304 1.22471 1.02487 0.96966 0.96736 1.24123 1.06885 0.97099 1.00858 1.20295 0.98390 1.03002 0.93142 1.20422 1.02105 0.90787 1.01489 1.25458 1.10962 0.95375 0.99057 1.98355 1.95465 1.48435 1.56266 1.84586 1.49227 1.10636 1.14024 0.87774 0.89982 0.92691 0.94369 0.93603 0.93080 0.89083 0.89450 0.91233 0.90655 0.80628 0.80964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.05 71.98 0.65 -2.09 16 2 C -0.01 -0.17 3.20 -12.29 -0.04 -0.21 16 3 H 0.15 3.03 8.08 -2.39 -0.02 3.01 16 4 C 0.45 16.23 7.22 71.24 0.51 16.74 16 5 O -0.54 -22.58 15.00 21.96 0.33 -22.25 16 6 O -0.34 -14.14 10.06 -51.37 -0.52 -14.65 16 7 C 0.13 6.13 5.29 71.98 0.38 6.51 16 8 C 0.01 0.28 1.62 -52.93 -0.09 0.20 16 9 C -0.50 -26.86 8.77 25.60 0.22 -26.64 16 10 H 0.06 3.10 7.82 -2.91 -0.02 3.08 16 11 C 0.02 1.18 5.38 84.65 0.46 1.64 16 12 N -0.91 -51.67 12.88 21.45 0.28 -51.40 16 13 Si 0.95 42.52 29.54 68.60 2.03 44.54 16 14 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 C -0.18 -7.19 9.96 30.62 0.30 -6.89 16 18 C -0.15 -6.80 9.37 30.62 0.29 -6.52 16 19 C -0.17 -4.12 4.60 24.58 0.11 -4.01 16 20 C -0.12 -2.33 10.01 21.22 0.21 -2.12 16 21 C -0.12 -2.22 10.13 21.25 0.22 -2.01 16 22 C -0.16 -3.69 7.10 66.75 0.47 -3.21 16 23 Cl -0.01 -0.28 29.29 -2.72 -0.08 -0.36 16 24 S 0.15 3.85 22.18 -56.49 -1.25 2.60 16 25 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.69 8.11 -2.39 -0.02 1.67 16 27 H 0.05 1.14 8.00 -2.39 -0.02 1.12 16 28 H 0.04 2.05 8.13 -2.39 -0.02 2.03 16 29 H 0.05 2.04 8.08 -2.38 -0.02 2.02 16 30 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 31 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 33 H 0.07 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -63.96 345.36 5.58 -58.39 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.09 Total: 11.74 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 3.71 Total: -28.61 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.28 Total: -51.40 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.19 Total: -36.90 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.25 Total: 2.60 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -63.96 5.58 -58.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175183666.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.019 kcal (2) G-P(sol) polarization free energy of solvation -63.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds