Wall clock time and date at job start Tue Mar 31 2020 11:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99668 * 2 1 4 4 C 1.50704 * 109.47190 * 269.99899 * 3 2 1 5 5 H 1.07997 * 119.99853 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99639 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99338 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00308 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47029 * 90.00209 * 8 6 4 10 10 H 1.48502 * 109.47087 * 210.00331 * 8 6 4 11 11 H 1.48501 * 109.47395 * 330.00228 * 8 6 4 12 12 C 1.34776 * 120.00210 * 180.02562 * 2 1 3 13 13 O 1.21359 * 119.99932 * 174.42804 * 12 2 1 14 14 C 1.49349 * 119.99558 * 354.41981 * 12 2 1 15 15 O 1.21375 * 120.00296 * 0.74168 * 14 12 2 16 16 N 1.34776 * 119.99503 * 180.74112 * 14 12 2 17 17 C 1.39821 * 119.99558 * 185.87092 * 16 14 12 18 18 C 1.38889 * 120.08232 * 23.68708 * 17 16 14 19 19 C 1.38120 * 119.97357 * 179.76651 * 18 17 16 20 20 C 1.38287 * 120.13029 * 0.53102 * 19 18 17 21 21 C 1.38376 * 120.15414 * 359.70333 * 20 19 18 22 22 Cl 1.73604 * 119.98689 * 180.02562 * 21 20 19 23 23 C 1.38408 * 120.02724 * 0.03750 * 21 20 19 24 24 F 1.35103 * 120.06594 * 180.02562 * 23 21 20 25 25 H 1.09001 * 109.47076 * 263.82265 * 1 2 3 26 26 H 1.09004 * 109.46882 * 23.81669 * 1 2 3 27 27 H 1.08998 * 109.47166 * 143.81918 * 1 2 3 28 28 H 1.08995 * 109.47349 * 30.00154 * 3 2 1 29 29 H 1.09001 * 109.46816 * 150.00488 * 3 2 1 30 30 H 0.97008 * 119.99789 * 180.02562 * 7 6 4 31 31 H 0.97001 * 120.00415 * 6.14032 * 16 14 12 32 32 H 1.08002 * 120.01577 * 0.02562 * 18 17 16 33 33 H 1.08005 * 119.93737 * 180.24796 * 19 18 17 34 34 H 1.07995 * 119.92281 * 179.71985 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.3456 3.2575 -2.9126 8 14 3.7349 3.9281 -0.2529 9 1 5.1082 3.5060 0.1225 10 1 3.7507 5.3550 -0.6641 11 1 2.8293 3.7587 0.9117 12 6 2.1389 -1.1672 -0.0005 13 8 3.3482 -1.1696 -0.1026 14 6 1.3975 -2.4575 0.1247 15 8 0.1869 -2.4558 0.2133 16 7 2.0726 -3.6239 0.1392 17 6 1.3748 -4.8356 0.1325 18 6 0.0814 -4.8913 -0.3704 19 6 -0.6041 -6.0904 -0.3803 20 6 -0.0091 -7.2342 0.1196 21 6 1.2776 -7.1838 0.6263 22 17 2.0206 -8.6226 1.2522 23 6 1.9723 -5.9868 0.6346 24 9 3.2288 -5.9368 1.1286 25 1 -0.3633 -0.1106 1.0217 26 1 -0.3633 0.9402 -0.4150 27 1 -0.3633 -0.8295 -0.6067 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 3.8230 4.0831 -3.0899 31 1 3.0424 -3.6228 0.1582 32 1 -0.3868 -3.9982 -0.7573 33 1 -1.6084 -6.1339 -0.7752 34 1 -0.5497 -8.1691 0.1143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271702316.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:03 Heat of formation + Delta-G solvation = -89.177891 kcal Electronic energy + Delta-G solvation = -23174.193220 eV Core-core repulsion = 19240.877253 eV Total energy + Delta-G solvation = -3933.315967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.15761 -42.33139 -40.50970 -39.31390 -37.75467 -37.19695 -35.89144 -34.65909 -31.58375 -31.13430 -30.60908 -27.84752 -26.41551 -24.72174 -23.96350 -22.84850 -21.10578 -19.56120 -19.19681 -18.75454 -18.58226 -17.69118 -17.53949 -17.15950 -16.94271 -16.60668 -16.22078 -15.92721 -15.69118 -15.19836 -15.12262 -14.48466 -14.41718 -14.14140 -13.97343 -13.76813 -13.54305 -13.37588 -13.11081 -13.05696 -12.64754 -12.47840 -12.28518 -12.11807 -12.03195 -11.75973 -11.67475 -10.84118 -10.50031 -9.84823 -9.67806 -9.39789 -8.34927 -6.42017 -0.36446 -0.15865 0.41508 0.77398 1.17233 1.36384 1.39119 1.47661 1.97060 2.31045 2.38189 2.39803 2.84848 2.98857 3.11672 3.63988 3.74250 4.06310 4.16574 4.37965 4.50162 4.61222 4.69660 4.76929 4.83703 4.87619 5.00931 5.10924 5.22627 5.33139 5.39720 5.59844 5.70420 6.11865 6.23690 6.46767 6.59614 6.85187 7.21991 8.81807 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.030102 B = 0.002915 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.959323 B = 9601.793887 C =10089.548800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.566 5.566 3 C 0.220 3.780 4 C -0.541 4.541 5 H 0.030 0.970 6 C 0.014 3.986 7 N -0.943 5.943 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.277 1.277 11 H -0.234 1.234 12 C 0.489 3.511 13 O -0.553 6.553 14 C 0.526 3.474 15 O -0.489 6.489 16 N -0.639 5.639 17 C 0.115 3.885 18 C -0.112 4.112 19 C -0.077 4.077 20 C -0.089 4.089 21 C -0.060 4.060 22 Cl -0.045 7.045 23 C 0.061 3.939 24 F -0.134 7.134 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.032 0.968 30 H 0.270 0.730 31 H 0.428 0.572 32 H 0.157 0.843 33 H 0.181 0.819 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.323 -21.836 9.251 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.297 5.297 3 C 0.098 3.902 4 C -0.580 4.580 5 H 0.048 0.952 6 C -0.185 4.185 7 N -0.583 5.583 8 Si 0.770 3.230 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.157 1.157 12 C 0.271 3.729 13 O -0.432 6.432 14 C 0.309 3.691 15 O -0.363 6.363 16 N -0.284 5.284 17 C 0.019 3.981 18 C -0.132 4.132 19 C -0.095 4.095 20 C -0.108 4.108 21 C -0.088 4.088 22 Cl -0.016 7.016 23 C 0.038 3.962 24 F -0.113 7.113 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.266 0.734 32 H 0.174 0.826 33 H 0.199 0.801 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -10.369 -21.707 9.220 25.763 hybrid contribution 1.689 0.711 0.115 1.836 sum -8.681 -20.996 9.335 24.563 Atomic orbital electron populations 1.22289 0.76454 1.04162 1.03526 1.47867 1.09272 1.05349 1.67219 1.19652 0.93158 0.81218 0.96124 1.21454 1.37391 1.07123 0.92008 0.95182 1.25850 0.95115 0.98807 0.98722 1.70046 1.42330 1.24487 1.21410 0.85713 0.79765 0.77708 0.79786 1.19873 1.20186 1.15693 1.20069 0.87386 0.85493 0.79941 1.90744 1.15006 1.87167 1.50263 1.20008 0.87417 0.84631 0.77047 1.90638 1.13035 1.86751 1.45913 1.43014 1.12071 1.03031 1.70293 1.17867 0.94849 0.83592 1.01808 1.21689 0.91975 1.01487 0.98082 1.21514 1.01639 0.89526 0.96825 1.21419 0.91266 1.01513 0.96629 1.20915 0.96033 0.86807 1.05025 1.98397 1.82471 1.35218 1.85476 1.17205 0.81887 0.93425 1.03674 1.91509 1.37291 1.97001 1.85462 0.90314 0.90718 0.89027 0.91843 0.95021 0.92124 0.73365 0.82584 0.80135 0.80537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.41 9.27 127.77 1.18 3.60 16 2 N -0.57 -22.92 2.86 -852.83 -2.44 -25.35 16 3 C 0.22 10.24 4.16 85.63 0.36 10.60 16 4 C -0.54 -30.95 9.94 25.60 0.25 -30.70 16 5 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 6 C 0.01 0.78 5.47 84.66 0.46 1.24 16 7 N -0.94 -58.47 13.96 21.45 0.30 -58.17 16 8 Si 0.95 42.62 27.47 68.60 1.88 44.50 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.23 -9.27 6.54 99.48 0.65 -8.62 16 12 C 0.49 19.54 7.72 87.24 0.67 20.22 16 13 O -0.55 -25.65 16.13 -3.27 -0.05 -25.70 16 14 C 0.53 16.60 7.58 87.24 0.66 17.26 16 15 O -0.49 -14.44 10.37 -3.33 -0.03 -14.47 16 16 N -0.64 -17.72 5.30 -304.68 -1.61 -19.34 16 17 C 0.11 2.73 6.45 38.23 0.25 2.98 16 18 C -0.11 -2.21 8.73 22.40 0.20 -2.02 16 19 C -0.08 -0.95 10.04 22.25 0.22 -0.73 16 20 C -0.09 -1.09 9.82 22.31 0.22 -0.87 16 21 C -0.06 -1.08 6.32 22.34 0.14 -0.93 16 22 Cl -0.04 -0.77 28.61 -2.72 -0.08 -0.85 16 23 C 0.06 1.37 7.28 22.51 0.16 1.54 16 24 F -0.13 -3.37 16.37 44.97 0.74 -2.64 16 25 H 0.08 2.07 8.13 -2.39 -0.02 2.05 16 26 H 0.07 2.33 8.03 -2.39 -0.02 2.31 16 27 H 0.09 2.74 5.83 -2.39 -0.01 2.73 16 28 H 0.06 2.66 7.13 -2.39 -0.02 2.65 16 29 H 0.03 1.53 6.93 -2.39 -0.02 1.52 16 30 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 31 H 0.43 11.83 7.92 -92.71 -0.73 11.09 16 32 H 0.16 3.37 5.72 -2.91 -0.02 3.35 16 33 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.18 1.03 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -70.98 316.76 3.87 -67.10 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.39 Total: 12.73 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 4.78 Total: 22.18 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -3.75 Total: -102.86 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -0.09 Total: -40.18 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.74 Total: -2.64 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.50 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -70.98 3.87 -67.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271702316.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.076 kcal (2) G-P(sol) polarization free energy of solvation -70.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds