Wall clock time and date at job start Tue Mar 31 2020 10:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99574 * 2 1 4 4 C 1.50695 * 109.47348 * 270.00614 * 3 2 1 5 5 H 1.07995 * 119.99999 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99705 * 180.02562 * 4 3 2 7 7 N 1.31505 * 120.00266 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99593 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47349 * 89.99561 * 8 6 4 10 10 H 1.48505 * 109.46796 * 209.99508 * 8 6 4 11 11 H 1.48497 * 109.47217 * 329.99391 * 8 6 4 12 12 C 1.34773 * 120.00366 * 180.02562 * 2 1 3 13 13 O 1.21356 * 120.00059 * 174.34295 * 12 2 1 14 14 C 1.49351 * 119.99773 * 354.34320 * 12 2 1 15 15 O 1.21378 * 120.00212 * 359.86544 * 14 12 2 16 16 N 1.34779 * 119.99704 * 179.86749 * 14 12 2 17 17 C 1.39727 * 119.99653 * 185.11573 * 16 14 12 18 18 C 1.38920 * 120.05518 * 324.58408 * 17 16 14 19 19 C 1.38308 * 119.92149 * 180.02562 * 18 17 16 20 20 F 1.35096 * 119.97568 * 179.97438 * 19 18 17 21 21 C 1.38516 * 120.03806 * 359.97438 * 19 18 17 22 22 C 1.38354 * 120.11765 * 0.02562 * 21 19 18 23 23 Cl 1.73602 * 119.96299 * 179.97438 * 22 21 19 24 24 C 1.38246 * 120.07209 * 0.02562 * 22 21 19 25 25 H 1.09007 * 109.46417 * 264.05591 * 1 2 3 26 26 H 1.08988 * 109.47466 * 24.05511 * 1 2 3 27 27 H 1.08999 * 109.46705 * 144.06065 * 1 2 3 28 28 H 1.09004 * 109.47107 * 30.00732 * 3 2 1 29 29 H 1.08996 * 109.46864 * 150.00275 * 3 2 1 30 30 H 0.97002 * 119.99962 * 180.02562 * 7 6 4 31 31 H 0.97001 * 120.00514 * 5.11123 * 16 14 12 32 32 H 1.07993 * 120.03989 * 0.02646 * 18 17 16 33 33 H 1.08006 * 119.94362 * 180.28102 * 21 19 18 34 34 H 1.08003 * 120.01977 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7040 -1.4207 5 1 2.0980 1.0961 -2.2416 6 6 3.1267 2.8778 -1.6726 7 7 3.5540 3.6178 -0.6730 8 14 3.4384 3.4168 -3.4337 9 1 2.3088 4.2599 -3.9007 10 1 4.6990 4.1995 -3.4960 11 1 3.5556 2.2196 -4.3045 12 6 2.1390 -1.1671 -0.0005 13 8 3.3481 -1.1696 -0.1041 14 6 1.3977 -2.4575 0.1264 15 8 0.1886 -2.4549 0.2325 16 7 2.0715 -3.6248 0.1232 17 6 1.3727 -4.8347 0.1341 18 6 0.1833 -4.9449 0.8434 19 6 -0.5058 -6.1440 0.8527 20 9 -1.6623 -6.2525 1.5425 21 6 -0.0110 -7.2336 0.1552 22 6 1.1734 -7.1256 -0.5517 23 17 1.7904 -8.4940 -1.4240 24 6 1.8667 -5.9296 -0.5634 25 1 -0.3632 -0.1064 1.0222 26 1 -0.3634 0.9383 -0.4188 27 1 -0.3633 -0.8321 -0.6032 28 1 1.6084 2.0284 0.5140 29 1 3.1499 1.1385 0.5138 30 1 4.0307 4.4437 -0.8502 31 1 3.0414 -3.6250 0.1132 32 1 -0.2027 -4.0953 1.3868 33 1 -0.5527 -8.1680 0.1598 34 1 2.7914 -5.8464 -1.1152 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283444784.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:59 Heat of formation + Delta-G solvation = -95.899294 kcal Electronic energy + Delta-G solvation = -22914.743959 eV Core-core repulsion = 18981.136530 eV Total energy + Delta-G solvation = -3933.607429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.05992 -42.29494 -40.53550 -39.28307 -37.70781 -37.08928 -35.77243 -34.66634 -31.67284 -31.13257 -30.04162 -27.82191 -26.47887 -24.80194 -24.06402 -22.92002 -21.14014 -19.56775 -18.81121 -18.75767 -17.96166 -17.63072 -17.41333 -17.07311 -16.83384 -16.74261 -16.48857 -16.10179 -15.72934 -15.19473 -14.90841 -14.62595 -14.36911 -14.20548 -13.88211 -13.67499 -13.40383 -13.33375 -12.99888 -12.82079 -12.75438 -12.58466 -12.28405 -12.23196 -12.14422 -11.75288 -11.44703 -10.65352 -10.47008 -9.88198 -9.69552 -9.52554 -8.25182 -6.39571 -0.34666 -0.16829 0.38460 0.79933 1.24617 1.39764 1.41355 1.52252 2.00424 2.29805 2.36446 2.49226 3.03125 3.06577 3.22925 3.77694 3.84083 3.86119 3.95530 4.33124 4.41991 4.67317 4.74331 4.82244 4.87612 4.91324 4.92546 5.08466 5.13520 5.40045 5.54482 5.67849 5.81910 5.98383 6.31293 6.56661 6.67015 6.93402 7.30918 8.82494 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.021167 B = 0.002925 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.502484 B = 9569.210819 C =10390.906544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.571 5.571 3 C 0.256 3.744 4 C -0.547 4.547 5 H 0.054 0.946 6 C 0.013 3.987 7 N -0.925 5.925 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.272 1.272 12 C 0.489 3.511 13 O -0.551 6.551 14 C 0.524 3.476 15 O -0.500 6.500 16 N -0.635 5.635 17 C 0.179 3.821 18 C -0.163 4.163 19 C 0.126 3.874 20 F -0.133 7.133 21 C -0.150 4.150 22 C 0.010 3.990 23 Cl -0.039 7.039 24 C -0.134 4.134 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.035 0.965 29 H 0.014 0.986 30 H 0.269 0.731 31 H 0.435 0.565 32 H 0.147 0.853 33 H 0.169 0.831 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 -22.907 1.473 23.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.302 5.302 3 C 0.136 3.864 4 C -0.586 4.586 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.792 3.208 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.197 1.197 12 C 0.271 3.729 13 O -0.431 6.431 14 C 0.307 3.693 15 O -0.374 6.374 16 N -0.283 5.283 17 C 0.084 3.916 18 C -0.184 4.184 19 C 0.106 3.894 20 F -0.111 7.111 21 C -0.170 4.170 22 C -0.018 4.018 23 Cl -0.010 7.010 24 C -0.154 4.154 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.276 0.724 32 H 0.164 0.836 33 H 0.186 0.814 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.798 -22.751 1.483 23.792 hybrid contribution 0.599 0.683 -0.544 1.059 sum -6.199 -22.069 0.939 22.942 Atomic orbital electron populations 1.22197 0.77059 1.03816 1.03072 1.48116 1.09055 1.05969 1.67020 1.19062 0.91510 0.79032 0.96786 1.21622 1.37340 1.06914 0.92683 0.92760 1.25795 0.94708 0.96236 1.01937 1.70024 1.38619 1.14767 1.32985 0.85411 0.78051 0.78258 0.79087 1.19118 1.20473 1.19674 1.20044 0.87390 0.85337 0.80113 1.90732 1.14793 1.87152 1.50375 1.20149 0.87288 0.85052 0.76858 1.90701 1.13709 1.86898 1.46113 1.43026 1.12107 1.02446 1.70720 1.17205 0.93063 0.85254 0.96092 1.21329 0.96768 0.98329 1.02002 1.17168 0.83567 0.93829 0.94832 1.91533 1.45975 1.96545 1.77092 1.21143 0.96753 0.99994 0.99126 1.20224 0.94757 0.89491 0.97325 1.98410 1.86689 1.41642 1.74287 1.21017 1.03251 0.90549 1.00632 0.91163 0.90980 0.89056 0.94703 0.96807 0.92199 0.72402 0.83578 0.81368 0.81711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.71 9.27 127.77 1.18 3.90 16 2 N -0.57 -24.18 2.86 -852.84 -2.44 -26.62 16 3 C 0.26 13.26 5.09 85.63 0.44 13.69 16 4 C -0.55 -30.49 9.39 25.60 0.24 -30.25 16 5 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.72 5.46 84.66 0.46 1.18 16 7 N -0.92 -53.87 13.29 21.45 0.28 -53.58 16 8 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 12 C 0.49 19.55 7.72 87.24 0.67 20.22 16 13 O -0.55 -25.16 16.12 -3.26 -0.05 -25.21 16 14 C 0.52 16.23 7.61 87.24 0.66 16.90 16 15 O -0.50 -15.66 10.71 -3.33 -0.04 -15.69 16 16 N -0.64 -15.31 5.32 -304.86 -1.62 -16.94 16 17 C 0.18 3.78 6.29 38.21 0.24 4.02 16 18 C -0.16 -3.66 8.67 22.45 0.19 -3.46 16 19 C 0.13 2.49 7.30 22.35 0.16 2.65 16 20 F -0.13 -2.80 17.27 44.97 0.78 -2.03 16 21 C -0.15 -2.35 9.80 22.36 0.22 -2.13 16 22 C 0.01 0.15 6.32 22.30 0.14 0.29 16 23 Cl -0.04 -0.54 28.95 -2.72 -0.08 -0.62 16 24 C -0.13 -2.23 9.75 22.43 0.22 -2.01 16 25 H 0.07 2.10 8.13 -2.38 -0.02 2.08 16 26 H 0.07 2.42 8.03 -2.39 -0.02 2.40 16 27 H 0.09 2.92 5.84 -2.39 -0.01 2.91 16 28 H 0.04 1.82 8.07 -2.38 -0.02 1.80 16 29 H 0.01 0.80 7.51 -2.39 -0.02 0.78 16 30 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.44 9.26 8.30 -92.71 -0.77 8.49 16 32 H 0.15 3.70 6.23 -2.91 -0.02 3.68 16 33 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -64.79 322.36 4.10 -60.69 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.40 Total: 9.44 kcal Atomic # 6 Polarization: 20.16 SS G_CDS: 4.84 Total: 25.00 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -3.77 Total: -97.13 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.09 Total: -40.91 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -64.79 4.10 -60.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283444784.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.209 kcal (2) G-P(sol) polarization free energy of solvation -64.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds