Wall clock time and date at job start Tue Mar 31 2020 10:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47169 * 2 1 4 4 C 1.50708 * 109.47078 * 120.00228 * 2 1 3 5 5 H 1.07996 * 119.99619 * 114.43460 * 4 2 1 6 6 C 1.37876 * 119.99900 * 294.42924 * 4 2 1 7 7 N 1.31505 * 119.99986 * 162.95969 * 6 4 2 8 8 Si 1.86804 * 119.99834 * 343.23795 * 6 4 2 9 9 H 1.48498 * 109.47007 * 269.72186 * 8 6 4 10 10 H 1.48496 * 109.47365 * 29.72285 * 8 6 4 11 11 H 1.48500 * 109.46595 * 149.72288 * 8 6 4 12 12 N 1.46509 * 109.47014 * 239.99978 * 2 1 3 13 13 C 1.34774 * 119.99686 * 85.00163 * 12 2 1 14 14 O 1.21358 * 120.00173 * 359.97438 * 13 12 2 15 15 C 1.49343 * 119.99776 * 179.97438 * 13 12 2 16 16 O 1.21383 * 120.00513 * 0.02562 * 15 13 12 17 17 N 1.34772 * 120.00340 * 179.97438 * 15 13 12 18 18 C 1.39769 * 120.00624 * 186.22926 * 17 15 13 19 19 C 1.38935 * 120.06587 * 19.80127 * 18 17 15 20 20 C 1.38101 * 119.98493 * 179.75169 * 19 18 17 21 21 C 1.38291 * 120.11558 * 0.55266 * 20 19 18 22 22 C 1.38474 * 120.13792 * 359.70260 * 21 20 19 23 23 F 1.35100 * 119.99445 * 180.02562 * 22 21 20 24 24 C 1.38434 * 120.01596 * 0.02562 * 22 21 20 25 25 Cl 1.73602 * 120.06184 * 180.02562 * 24 22 21 26 26 H 1.08998 * 109.46976 * 294.21450 * 1 2 3 27 27 H 1.08994 * 109.46831 * 54.21691 * 1 2 3 28 28 H 1.09006 * 109.46960 * 174.21894 * 1 2 3 29 29 H 0.97006 * 120.00122 * 355.18502 * 7 6 4 30 30 H 0.97001 * 120.00052 * 265.00214 * 12 2 1 31 31 H 0.97005 * 119.99830 * 6.22230 * 17 15 13 32 32 H 1.07995 * 120.00774 * 0.02562 * 19 18 17 33 33 H 1.07990 * 119.94034 * 180.27336 * 20 19 18 34 34 H 1.08003 * 119.92800 * 179.72075 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.5771 -1.6380 1.1339 6 6 1.7966 -0.1763 2.4795 7 7 1.9242 -0.9280 3.5509 8 14 1.2882 1.6132 2.6492 9 1 2.4992 2.4601 2.7953 10 1 0.5352 2.0308 1.4393 11 1 0.4260 1.7712 3.8479 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3572 14 8 1.8580 1.1591 -2.4117 15 6 2.6454 -0.7221 -3.5764 16 8 2.9341 -1.8999 -3.5220 17 7 2.7736 -0.0500 -4.7375 18 6 3.1143 -0.7345 -5.9075 19 6 2.9241 -2.1082 -5.9907 20 6 3.2565 -2.7822 -7.1493 21 6 3.7894 -2.0938 -8.2238 22 6 3.9861 -0.7254 -8.1444 23 9 4.5064 -0.0557 -9.1961 24 6 3.6496 -0.0434 -6.9877 25 17 3.8950 1.6723 -6.8871 26 1 -0.3633 0.4215 0.9372 27 1 -0.3633 0.6009 -0.8336 28 1 -0.3633 -1.0225 -0.1035 29 1 2.1157 -1.8746 3.4593 30 1 2.2490 -1.6318 -1.1527 31 1 2.6294 0.9090 -4.7612 32 1 2.5122 -2.6483 -5.1510 33 1 3.1042 -3.8493 -7.2148 34 1 4.0525 -2.6246 -9.1269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287761499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:25 Heat of formation + Delta-G solvation = -107.215191 kcal Electronic energy + Delta-G solvation = -22941.398421 eV Core-core repulsion = 19007.300299 eV Total energy + Delta-G solvation = -3934.098123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.09278 -42.38664 -40.61622 -39.34368 -37.74473 -37.22216 -36.13500 -34.51114 -31.80623 -31.62823 -30.96899 -27.04433 -26.51344 -24.33490 -23.86691 -22.29772 -21.42421 -20.53145 -19.56714 -19.03904 -18.18690 -17.76304 -17.47822 -17.19205 -16.85809 -16.62501 -16.49713 -15.67507 -15.46237 -15.31674 -15.05100 -14.66625 -14.49034 -14.32051 -14.22362 -13.75651 -13.55102 -13.34321 -12.90841 -12.77067 -12.61202 -12.46745 -12.19664 -12.09467 -11.89525 -11.53754 -11.17633 -10.78332 -10.56572 -10.18720 -9.88528 -9.45700 -8.82830 -6.48253 -0.43521 -0.15145 0.38360 0.74404 1.05500 1.51158 1.51880 1.71999 1.92923 2.37880 2.40960 2.44797 2.98474 2.99140 3.25439 3.60626 3.69935 3.96493 4.17444 4.43312 4.53633 4.62371 4.66384 4.70058 4.92375 4.99510 5.02480 5.20352 5.27204 5.41396 5.51937 5.62696 5.71523 5.97814 6.23336 6.45885 6.52945 6.88991 7.28025 8.56672 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.027947 B = 0.003019 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.647580 B = 9271.779053 C = 9955.429987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.242 3.758 3 H 0.040 0.960 4 C -0.620 4.620 5 H 0.040 0.960 6 C -0.002 4.002 7 N -0.925 5.925 8 Si 1.072 2.928 9 H -0.276 1.276 10 H -0.243 1.243 11 H -0.280 1.280 12 N -0.665 5.665 13 C 0.499 3.501 14 O -0.548 6.548 15 C 0.523 3.477 16 O -0.499 6.499 17 N -0.635 5.635 18 C 0.171 3.829 19 C -0.149 4.149 20 C -0.047 4.047 21 C -0.148 4.148 22 C 0.122 3.878 23 F -0.128 7.128 24 C -0.123 4.123 25 Cl -0.047 7.047 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.260 0.740 30 H 0.411 0.589 31 H 0.429 0.571 32 H 0.160 0.840 33 H 0.181 0.819 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 -1.525 -25.602 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.138 3.862 3 H 0.058 0.942 4 C -0.658 4.658 5 H 0.058 0.942 6 C -0.203 4.203 7 N -0.559 5.559 8 Si 0.893 3.107 9 H -0.201 1.201 10 H -0.166 1.166 11 H -0.205 1.205 12 N -0.314 5.314 13 C 0.279 3.721 14 O -0.427 6.427 15 C 0.306 3.694 16 O -0.373 6.373 17 N -0.280 5.280 18 C 0.074 3.926 19 C -0.170 4.170 20 C -0.066 4.066 21 C -0.167 4.167 22 C 0.101 3.899 23 F -0.107 7.107 24 C -0.153 4.153 25 Cl -0.018 7.018 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.247 0.753 31 H 0.269 0.731 32 H 0.177 0.823 33 H 0.198 0.802 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.222 -0.162 -24.399 24.430 hybrid contribution 0.766 -0.956 -0.730 1.426 sum 1.988 -1.118 -25.129 25.232 Atomic orbital electron populations 1.22345 0.96664 1.01128 1.00830 1.19079 0.92101 0.93559 0.81459 0.94240 1.22209 1.40824 1.10493 0.92293 0.94206 1.26908 0.93310 1.08637 0.91435 1.70925 1.45550 1.07544 1.31875 0.83744 0.78061 0.71276 0.77586 1.20140 1.16618 1.20519 1.46069 1.61876 1.14928 1.08562 1.19948 0.80342 0.87036 0.84813 1.90733 1.51141 1.15876 1.84984 1.20198 0.78196 0.86823 0.84222 1.90677 1.46557 1.15595 1.84512 1.43147 1.65791 1.13529 1.05550 1.17467 0.97819 0.92578 0.84688 1.21867 1.02261 0.91352 1.01480 1.21446 0.93181 1.02286 0.89652 1.21552 1.02246 0.90392 1.02514 1.17297 0.98719 0.90965 0.82890 1.91543 1.83948 1.80722 1.54451 1.20728 1.11114 0.86812 0.96678 1.98393 1.95495 1.09783 1.98177 0.92271 0.93425 0.92786 0.93104 0.75258 0.73126 0.82301 0.80210 0.80364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.19 8.81 71.98 0.63 -5.56 16 2 C 0.24 10.90 2.11 44.25 0.09 11.00 16 3 H 0.04 1.88 6.14 -2.39 -0.01 1.86 16 4 C -0.62 -32.80 9.01 25.60 0.23 -32.57 16 5 H 0.04 2.26 7.96 -2.91 -0.02 2.24 16 6 C 0.00 -0.09 5.31 84.66 0.45 0.36 16 7 N -0.92 -54.73 13.70 21.45 0.29 -54.44 16 8 Si 1.07 47.65 26.20 68.60 1.80 49.45 16 9 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.24 -9.71 5.63 99.48 0.56 -9.15 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.66 -25.98 5.06 -447.51 -2.27 -28.25 16 13 C 0.50 17.83 7.85 87.24 0.68 18.51 16 14 O -0.55 -21.47 16.15 -3.27 -0.05 -21.52 16 15 C 0.52 15.61 7.72 87.24 0.67 16.29 16 16 O -0.50 -15.33 13.40 -3.35 -0.04 -15.38 16 17 N -0.63 -16.18 5.23 -304.78 -1.59 -17.77 16 18 C 0.17 3.86 6.49 38.22 0.25 4.11 16 19 C -0.15 -2.92 8.77 22.40 0.20 -2.73 16 20 C -0.05 -0.59 10.04 22.25 0.22 -0.37 16 21 C -0.15 -1.81 10.02 22.34 0.22 -1.58 16 22 C 0.12 2.19 7.27 22.37 0.16 2.36 16 23 F -0.13 -2.45 16.84 44.97 0.76 -1.70 16 24 C -0.12 -2.61 6.34 22.49 0.14 -2.46 16 25 Cl -0.05 -1.02 27.38 -2.72 -0.07 -1.10 16 26 H 0.06 2.44 5.22 -2.39 -0.01 2.42 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.26 15.46 8.73 -92.70 -0.81 14.65 16 30 H 0.41 15.30 8.00 -92.71 -0.74 14.56 16 31 H 0.43 10.57 7.12 -92.70 -0.66 9.91 16 32 H 0.16 3.49 5.45 -2.91 -0.02 3.48 16 33 H 0.18 0.99 8.06 -2.92 -0.02 0.97 16 34 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -62.68 314.55 2.39 -60.29 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.39 Total: 23.05 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 3.96 Total: 7.36 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -3.57 Total: -100.46 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -0.10 Total: -36.90 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.76 Total: -1.70 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 1.80 Total: 49.45 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.07 Total: -1.10 kcal Total: -62.68 2.39 -60.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287761499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.923 kcal (2) G-P(sol) polarization free energy of solvation -62.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds