Wall clock time and date at job start Tue Mar 31 2020 10:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47413 * 352.70776 * 3 2 1 5 5 C 1.36810 * 119.99942 * 262.45062 * 4 3 2 6 6 H 1.08000 * 120.00312 * 205.61757 * 5 4 3 7 7 C 1.39079 * 119.99869 * 25.61447 * 5 4 3 8 8 N 1.31337 * 120.00225 * 25.34255 * 7 5 4 9 9 Si 1.86811 * 120.00104 * 205.34522 * 7 5 4 10 10 H 1.48499 * 109.46783 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47114 * 120.00279 * 9 7 5 12 12 H 1.48500 * 109.46826 * 239.99994 * 9 7 5 13 13 C 1.34774 * 120.00573 * 82.44870 * 4 3 2 14 14 O 1.21599 * 120.00662 * 181.53969 * 13 4 3 15 15 C 1.47776 * 119.99559 * 1.54416 * 13 4 3 16 16 C 1.38495 * 119.28333 * 172.34549 * 15 13 4 17 17 C 1.40551 * 118.53705 * 180.02562 * 16 15 13 18 18 C 1.40282 * 122.08651 * 179.97438 * 17 16 15 19 19 C 1.36285 * 119.47911 * 180.02562 * 18 17 16 20 20 C 1.39298 * 120.96867 * 359.97438 * 19 18 17 21 21 C 1.36309 * 121.09279 * 0.02562 * 20 19 18 22 22 C 1.40192 * 119.57878 * 0.27712 * 21 20 19 23 23 C 1.40872 * 121.85425 * 180.27107 * 22 21 20 24 24 Cl 1.73603 * 119.89489 * 359.42983 * 23 22 21 25 25 N 1.30992 * 120.21293 * 179.72841 * 23 22 21 26 26 H 4.40633 * 5.51397 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46872 * 232.70278 * 3 2 1 28 28 H 1.09010 * 109.46819 * 112.70870 * 3 2 1 29 29 H 0.97008 * 120.00577 * 179.97438 * 8 7 5 30 30 H 1.07996 * 120.73534 * 0.03173 * 16 15 13 31 31 H 1.08000 * 120.26238 * 0.03202 * 18 17 16 32 32 H 1.07995 * 119.51835 * 179.97438 * 19 18 17 33 33 H 1.08001 * 119.45290 * 180.02562 * 20 19 18 34 34 H 1.07998 * 120.21082 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3691 0.1753 5 6 3.5100 -1.8080 1.4156 6 1 4.2275 -2.6096 1.5107 7 6 2.9672 -1.2219 2.5541 8 7 1.7916 -0.6393 2.4960 9 14 3.9104 -1.2633 4.1661 10 1 5.1990 -1.9741 3.9674 11 1 4.1753 0.1254 4.6205 12 1 3.1062 -1.9749 5.1919 13 6 3.2154 -2.1969 -0.8852 14 8 3.5948 -3.3424 -0.7350 15 6 2.8427 -1.7124 -2.2306 16 6 3.0805 -2.5190 -3.3310 17 6 2.7204 -2.0424 -4.6032 18 6 2.9278 -2.7965 -5.7677 19 6 2.5587 -2.2821 -6.9746 20 6 1.9783 -1.0193 -7.0682 21 6 1.7623 -0.2597 -5.9572 22 6 2.1347 -0.7527 -4.6988 23 6 1.9287 -0.0109 -3.5190 24 17 1.2082 1.5663 -3.6033 25 7 2.2843 -0.5050 -2.3591 26 1 -1.0498 -0.0004 0.0002 27 1 3.0090 0.6235 0.8175 28 1 3.0091 0.3976 -0.9481 29 1 1.4128 -0.2308 3.2902 30 1 3.5326 -3.4928 -3.2142 31 1 3.3765 -3.7772 -5.7084 32 1 2.7185 -2.8620 -7.8715 33 1 1.6947 -0.6357 -8.0372 34 1 1.3109 0.7173 -6.0462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312157502.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:47 Heat of formation + Delta-G solvation = 84.465136 kcal Electronic energy + Delta-G solvation = -22986.384731 eV Core-core repulsion = 19491.367716 eV Total energy + Delta-G solvation = -3495.017015 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.056 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.06036 -40.35888 -38.30776 -37.63767 -37.16188 -34.13873 -33.77868 -33.00021 -32.26983 -30.75557 -28.27089 -27.15927 -25.23704 -24.97018 -23.22584 -21.86398 -19.68971 -19.20587 -18.84172 -18.36831 -17.74118 -17.15676 -16.54078 -16.29865 -16.23688 -15.99051 -15.35349 -15.21963 -14.91997 -14.72276 -14.27066 -14.20186 -13.79616 -13.60114 -13.45690 -12.92124 -12.72134 -12.69076 -12.42717 -12.39464 -12.13679 -12.03577 -11.23603 -11.14068 -11.05921 -10.76356 -10.65509 -10.21741 -10.03668 -9.82942 -9.09360 -8.40773 -6.02022 -0.88931 -0.35730 0.61828 0.78752 1.29372 1.41264 1.55468 1.56291 2.08282 2.31059 2.39072 2.55663 2.89113 2.90798 3.09868 3.38583 3.55284 3.68422 3.80257 3.98655 4.01990 4.16434 4.28556 4.35401 4.62699 4.67074 4.80564 4.83472 5.02106 5.07760 5.37270 5.39147 5.40638 5.45499 5.47440 5.86466 5.99326 6.30577 6.56410 7.02818 7.25495 7.30837 7.88522 8.56288 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.004618 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.420182 B = 6062.302894 C = 7121.693575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.110 4.110 3 C 0.236 3.764 4 N -0.415 5.415 5 C -0.363 4.363 6 H 0.081 0.919 7 C 0.009 3.991 8 N -0.850 5.850 9 Si 0.989 3.011 10 H -0.268 1.268 11 H -0.262 1.262 12 H -0.276 1.276 13 C 0.469 3.531 14 O -0.624 6.624 15 C 0.066 3.934 16 C -0.096 4.096 17 C -0.034 4.034 18 C -0.111 4.111 19 C -0.083 4.083 20 C -0.096 4.096 21 C -0.099 4.099 22 C -0.099 4.099 23 C 0.199 3.801 24 Cl -0.008 7.008 25 N -0.467 5.467 26 H 0.223 0.777 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.277 0.723 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 4.576 -20.085 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.111 4.111 3 C 0.114 3.886 4 N -0.128 5.128 5 C -0.490 4.490 6 H 0.099 0.901 7 C -0.198 4.198 8 N -0.484 5.484 9 Si 0.811 3.189 10 H -0.192 1.192 11 H -0.187 1.187 12 H -0.202 1.202 13 C 0.259 3.741 14 O -0.513 6.513 15 C -0.058 4.058 16 C -0.117 4.117 17 C -0.039 4.039 18 C -0.129 4.129 19 C -0.102 4.102 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.103 4.103 23 C 0.018 3.982 24 Cl 0.020 6.980 25 N -0.180 5.180 26 H 0.240 0.760 27 H 0.086 0.914 28 H 0.132 0.868 29 H 0.087 0.913 30 H 0.169 0.831 31 H 0.172 0.828 32 H 0.188 0.812 33 H 0.188 0.812 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.416 4.670 -18.968 19.586 hybrid contribution 0.042 -0.391 0.943 1.021 sum -1.374 4.279 -18.026 18.577 Atomic orbital electron populations 1.24763 0.96032 1.01058 1.06766 1.22861 0.94235 0.99149 0.94884 1.18627 0.85461 0.83220 1.01259 1.43796 1.52010 1.10271 1.06757 1.19695 1.24555 1.22518 0.82215 0.90127 1.26256 0.95053 0.95947 1.02520 1.70222 1.13088 1.33327 1.31724 0.84975 0.78531 0.78772 0.76581 1.19181 1.18699 1.20176 1.18158 0.85982 0.85157 0.84808 1.90552 1.55592 1.19400 1.85737 1.20734 1.00199 0.90342 0.94505 1.22256 0.97776 1.00666 0.91044 1.18268 0.97921 0.93599 0.94144 1.21315 1.00319 1.00517 0.90742 1.21524 0.94785 0.95683 0.98233 1.21487 0.96353 0.93864 0.99656 1.21301 0.98948 1.01433 0.90145 1.18789 1.02426 0.94577 0.94483 1.22275 0.96429 0.89939 0.89535 1.98380 1.80380 1.21342 1.97873 1.67226 1.11120 1.13001 1.26670 0.76047 0.91389 0.86817 0.91325 0.83136 0.82785 0.81221 0.81243 0.83131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.15 19.25 74.32 1.43 -10.72 16 2 C -0.11 -5.42 9.69 31.13 0.30 -5.11 16 3 C 0.24 11.83 4.76 84.58 0.40 12.23 16 4 N -0.41 -23.32 2.58 -648.80 -1.67 -24.99 16 5 C -0.36 -21.35 9.10 84.12 0.77 -20.58 16 6 H 0.08 5.00 7.57 -2.91 -0.02 4.98 16 7 C 0.01 0.51 4.69 84.97 0.40 0.91 16 8 N -0.85 -46.49 10.17 21.68 0.22 -46.27 16 9 Si 0.99 42.40 29.62 68.60 2.03 44.44 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 12 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 13 C 0.47 25.85 7.51 86.77 0.65 26.51 16 14 O -0.62 -37.76 16.03 -4.03 -0.06 -37.83 16 15 C 0.07 2.99 6.59 41.45 0.27 3.26 16 16 C -0.10 -3.54 9.41 22.90 0.22 -3.33 16 17 C -0.03 -0.99 5.74 -21.29 -0.12 -1.11 16 18 C -0.11 -2.17 9.81 22.31 0.22 -1.95 16 19 C -0.08 -1.08 9.95 22.07 0.22 -0.86 16 20 C -0.10 -1.23 9.95 22.07 0.22 -1.01 16 21 C -0.10 -1.89 9.45 22.29 0.21 -1.68 16 22 C -0.10 -2.78 5.75 -21.24 -0.12 -2.90 16 23 C 0.20 6.62 7.35 85.46 0.63 7.25 16 24 Cl -0.01 -0.23 27.72 -2.72 -0.08 -0.31 16 25 N -0.47 -19.22 4.70 -174.96 -0.82 -20.04 16 26 H 0.22 8.25 7.80 -4.43 -0.03 8.21 16 27 H 0.07 3.50 7.02 -2.39 -0.02 3.48 16 28 H 0.11 5.27 5.41 -2.38 -0.01 5.26 16 29 H 0.28 14.08 8.31 -92.70 -0.77 13.31 16 30 H 0.15 5.47 7.62 -2.91 -0.02 5.45 16 31 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 33 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 34 H 0.15 2.36 7.03 -2.91 -0.02 2.34 16 Total: -1.00 -74.96 316.08 6.46 -68.50 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 1.15 Total: 15.60 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.69 Total: 0.90 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -2.27 Total: -91.31 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.06 Total: -37.83 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.31 kcal Total: -74.96 6.46 -68.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312157502.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.967 kcal (2) G-P(sol) polarization free energy of solvation -74.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds