Wall clock time and date at job start Tue Mar 31 2020 10:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99953 * 2 1 4 4 H 1.48492 * 109.46953 * 239.99714 * 3 2 1 5 5 H 1.48496 * 109.47067 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46734 * 119.99900 * 3 2 1 7 7 C 1.38722 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00357 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99884 * 0.02562 * 7 2 1 10 10 C 1.76198 * 100.00101 * 185.11535 * 9 7 2 11 11 C 1.39223 * 120.02188 * 265.53190 * 10 9 7 12 12 C 1.38129 * 120.19979 * 179.97438 * 11 10 9 13 13 C 1.38092 * 120.24370 * 359.71512 * 12 11 10 14 14 C 1.39631 * 120.03553 * 0.55998 * 13 12 11 15 15 C 1.47847 * 120.09791 * 179.71838 * 14 13 12 16 16 N 1.31961 * 126.55986 * 359.72599 * 15 14 13 17 17 C 1.34967 * 105.51490 * 179.97438 * 16 15 14 18 18 C 1.48336 * 126.32497 * 179.97438 * 17 16 15 19 19 C 1.46749 * 127.12324 * 179.71183 * 18 17 16 20 20 C 1.34340 * 106.00744 * 179.82797 * 19 18 17 21 21 O 1.34173 * 108.99990 * 0.43532 * 20 19 18 22 22 C 1.33979 * 110.77290 * 359.70616 * 21 20 19 23 23 N 1.30905 * 107.35020 * 359.97438 * 17 16 15 24 24 O 1.21271 * 110.31871 * 0.02562 * 23 17 16 25 25 C 1.38837 * 120.01826 * 85.50737 * 10 9 7 26 26 H 0.97006 * 119.99971 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.89747 * 359.97438 * 11 10 9 28 28 H 1.07998 * 119.87993 * 180.02562 * 12 11 10 29 29 H 1.08006 * 119.98062 * 180.30000 * 13 12 11 30 30 H 1.07996 * 126.99474 * 359.97438 * 19 18 17 31 31 H 1.07994 * 125.50227 * 180.14511 * 20 19 18 32 32 H 1.07997 * 125.76917 * 179.97438 * 22 21 20 33 33 H 1.07996 * 120.12455 * 0.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0099 -1.2014 0.0005 8 1 3.0898 -1.2014 0.0010 9 16 1.1289 -2.7273 0.0005 10 6 2.4726 -3.8564 0.1560 11 6 3.0367 -4.4286 -0.9809 12 6 4.0905 -5.3138 -0.8633 13 6 4.5954 -5.6327 0.3818 14 6 4.0335 -5.0692 1.5291 15 6 4.5689 -5.4144 2.8633 16 7 5.5658 -6.2398 3.1207 17 6 5.6967 -6.2400 4.4640 18 6 6.6864 -7.0163 5.2503 19 6 6.8479 -7.0254 6.7088 20 6 7.8591 -7.8721 6.9643 21 8 8.3229 -8.3613 5.8042 22 6 7.6348 -7.8617 4.7689 23 7 4.7889 -5.4287 4.9448 24 8 4.1346 -4.9476 4.0441 25 6 2.9697 -4.1757 1.4124 26 1 -0.4850 0.8401 0.0004 27 1 2.6492 -4.1796 -1.9577 28 1 4.5245 -5.7544 -1.7487 29 1 5.4227 -6.3217 0.4685 30 1 6.2698 -6.4670 7.4302 31 1 8.2406 -8.1157 7.9448 32 1 7.8054 -8.0917 3.7276 33 1 2.5341 -3.7334 2.2961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350821532.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:56 Heat of formation + Delta-G solvation = 89.718590 kcal Electronic energy + Delta-G solvation = -21311.641103 eV Core-core repulsion = 17818.895601 eV Total energy + Delta-G solvation = -3492.745502 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.051 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.62474 -43.47179 -40.05043 -37.20730 -34.92542 -34.62530 -33.36568 -32.01367 -31.30198 -30.77131 -27.71370 -26.10028 -25.59228 -23.67867 -23.35926 -22.15485 -21.59554 -20.04530 -19.36069 -19.27389 -18.35412 -17.73582 -17.03645 -16.91710 -16.88714 -16.23607 -16.07127 -15.71251 -14.91056 -14.62362 -14.57075 -14.20916 -13.96522 -13.80308 -13.44846 -13.42938 -13.27518 -13.14589 -12.94591 -12.62491 -12.41397 -12.25711 -12.13868 -11.69350 -11.19808 -10.77266 -10.60677 -9.90251 -9.74325 -9.58738 -8.78280 -8.37102 -6.16606 -0.71861 0.04509 0.19862 0.81416 1.04762 1.32526 1.40434 1.46662 1.51385 1.66436 1.83104 1.92841 2.23342 2.36258 2.66189 2.77077 2.96613 3.43265 3.59334 3.81803 3.90444 3.99714 4.06894 4.21175 4.36299 4.43373 4.51819 4.59603 4.71850 4.78287 4.87350 4.99365 5.21252 5.25756 5.32508 5.41527 5.46490 5.78690 5.96538 6.18488 6.90392 7.04216 8.69417 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.020329 B = 0.002823 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.024688 B = 9917.371009 C =10646.861518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.022 3.978 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.071 0.929 9 S -0.084 6.084 10 C -0.123 4.123 11 C -0.053 4.053 12 C -0.115 4.115 13 C -0.045 4.045 14 C -0.058 4.058 15 C 0.249 3.751 16 N -0.478 5.478 17 C 0.249 3.751 18 C -0.170 4.170 19 C -0.213 4.213 20 C -0.010 4.010 21 O -0.174 6.174 22 C 0.051 3.949 23 N -0.403 5.403 24 O 0.066 5.934 25 C -0.049 4.049 26 H 0.273 0.727 27 H 0.142 0.858 28 H 0.178 0.822 29 H 0.163 0.837 30 H 0.156 0.844 31 H 0.254 0.746 32 H 0.240 0.760 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.650 -16.756 6.758 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.183 4.183 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.684 4.684 8 H 0.089 0.911 9 S 0.151 5.849 10 C -0.234 4.234 11 C -0.074 4.074 12 C -0.134 4.134 13 C -0.065 4.065 14 C -0.062 4.062 15 C 0.032 3.968 16 N -0.212 5.212 17 C -0.021 4.021 18 C -0.173 4.173 19 C -0.233 4.233 20 C -0.076 4.076 21 O -0.068 6.068 22 C -0.021 4.021 23 N -0.115 5.115 24 O 0.011 5.989 25 C -0.072 4.072 26 H 0.083 0.917 27 H 0.160 0.840 28 H 0.195 0.805 29 H 0.180 0.820 30 H 0.174 0.826 31 H 0.270 0.730 32 H 0.256 0.744 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 15.742 -17.119 7.448 24.420 hybrid contribution 0.662 1.872 0.301 2.008 sum 16.404 -15.247 7.750 23.698 Atomic orbital electron populations 1.70093 1.07448 1.28812 1.47843 1.25935 0.95963 1.02694 0.93732 0.85162 0.78069 0.76537 0.79301 1.18689 1.19888 1.19489 1.23061 0.94802 0.91597 1.58905 0.91125 1.83579 1.07853 0.98165 1.95335 1.22453 1.02981 1.02690 0.95314 1.22166 0.93768 0.93305 0.98152 1.21517 0.95939 0.97662 0.98328 1.21516 0.98231 0.96746 0.89978 1.17346 0.99574 1.03400 0.85866 1.26485 0.90106 0.90331 0.89837 1.72147 1.16831 1.20362 1.11850 1.23264 0.95654 0.95976 0.87156 1.18891 0.99943 1.04944 0.93541 1.22950 1.02700 1.04804 0.92852 1.24693 0.96197 0.96714 0.89959 1.83969 1.51063 1.56920 1.14843 1.24609 0.90317 0.93643 0.93557 1.74891 1.09513 1.15163 1.11897 1.85396 1.47400 1.53340 1.12776 1.21741 0.93592 0.94033 0.97822 0.91745 0.84048 0.80477 0.81985 0.82607 0.73041 0.74392 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.01 13.22 21.63 0.29 -52.72 16 2 C 0.02 1.23 5.49 84.84 0.47 1.70 16 3 Si 0.99 43.26 29.55 68.60 2.03 45.29 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -29.94 9.46 67.94 0.64 -29.30 16 8 H 0.07 3.87 7.79 -2.91 -0.02 3.85 16 9 S -0.08 -4.31 21.41 -56.49 -1.21 -5.52 16 10 C -0.12 -4.97 5.45 22.65 0.12 -4.85 16 11 C -0.05 -1.68 9.79 22.48 0.22 -1.46 16 12 C -0.12 -2.70 10.02 22.21 0.22 -2.47 16 13 C -0.05 -1.11 9.70 22.57 0.22 -0.89 16 14 C -0.06 -1.80 5.87 -20.12 -0.12 -1.92 16 15 C 0.25 7.97 8.00 87.30 0.70 8.67 16 16 N -0.48 -14.11 11.27 -302.23 -3.41 -17.51 16 17 C 0.25 7.53 8.06 137.31 1.11 8.63 16 18 C -0.17 -4.02 6.33 -18.91 -0.12 -4.13 16 19 C -0.21 -4.08 11.15 23.60 0.26 -3.81 16 20 C -0.01 -0.12 12.04 66.93 0.81 0.68 16 21 O -0.17 -2.56 10.54 1.86 0.02 -2.54 16 22 C 0.05 0.86 12.07 67.27 0.81 1.67 16 23 N -0.40 -13.73 12.20 -57.66 -0.70 -14.43 16 24 O 0.07 2.32 11.11 69.68 0.77 3.09 16 25 C -0.05 -1.85 9.48 22.70 0.22 -1.63 16 26 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 27 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 28 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 29 H 0.16 3.11 7.87 -2.91 -0.02 3.08 16 30 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.25 0.58 8.06 -2.91 -0.02 0.56 16 32 H 0.24 2.68 8.06 -2.91 -0.02 2.65 16 33 H 0.12 4.86 7.94 -2.91 -0.02 4.83 16 Total: -1.00 -71.14 325.72 4.51 -66.63 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 1.16 Total: 6.83 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 5.56 Total: -29.11 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -3.82 Total: -84.67 kcal Atomic # 8 Polarization: -0.24 SS G_CDS: 0.79 Total: 0.56 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -4.31 SS G_CDS: -1.21 Total: -5.52 kcal Total: -71.14 4.51 -66.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350821532.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.346 kcal (2) G-P(sol) polarization free energy of solvation -71.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds