Wall clock time and date at job start Tue Mar 31 2020 10:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45200 * 109.47665 * 2 1 4 4 C 1.34224 * 117.00203 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00087 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00012 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.46959 * 324.99858 * 6 4 3 8 8 S 1.81401 * 109.47307 * 204.99890 * 6 4 3 9 9 C 1.81396 * 103.00100 * 174.99999 * 8 6 4 10 10 C 1.50701 * 109.47105 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99671 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00040 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99883 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99968 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47160 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47318 * 119.99886 * 14 12 10 17 17 H 1.48506 * 109.46877 * 239.99874 * 14 12 10 18 18 C 1.50703 * 109.47227 * 84.99860 * 6 4 3 19 19 C 1.38265 * 119.99306 * 59.72116 * 18 6 4 20 20 C 1.38217 * 120.02753 * 179.76448 * 19 18 6 21 21 C 1.38240 * 120.01219 * 0.51544 * 20 19 18 22 22 C 1.38338 * 119.98514 * 359.74489 * 21 20 19 23 23 Cl 1.73595 * 120.01212 * 180.02562 * 22 21 20 24 24 C 1.38192 * 119.99205 * 239.99986 * 18 6 4 25 25 H 1.08999 * 109.47443 * 59.99369 * 1 2 3 26 26 H 1.08996 * 109.47903 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46942 * 300.00008 * 1 2 3 28 28 H 1.09000 * 109.46942 * 239.99992 * 2 1 3 29 29 H 1.09003 * 109.47079 * 120.00294 * 2 1 3 30 30 H 1.09004 * 109.47026 * 300.00121 * 9 8 6 31 31 H 1.08994 * 109.47210 * 59.99878 * 9 8 6 32 32 H 0.96997 * 119.99792 * 180.02562 * 13 12 10 33 33 H 1.08000 * 119.98698 * 0.02562 * 19 18 6 34 34 H 1.08000 * 119.99334 * 180.25473 * 20 19 18 35 35 H 1.07996 * 120.00779 * 179.71653 * 21 20 19 36 36 H 1.07994 * 120.01192 * 0.02562 * 24 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5864 -0.0015 6 6 3.9208 2.9372 0.0000 7 1 3.2815 3.5951 -0.5888 8 16 5.5839 2.9039 -0.7236 9 6 6.0410 4.6585 -0.7769 10 6 7.4216 4.8004 -1.3642 11 1 7.9693 3.9227 -1.6740 12 6 7.9857 6.0506 -1.5051 13 7 7.3188 7.1193 -1.1274 14 14 9.6967 6.2264 -2.2339 15 1 10.2293 4.8832 -2.5765 16 1 9.6289 7.0603 -3.4607 17 1 10.5924 6.8755 -1.2430 18 6 3.9991 3.4480 1.4157 19 6 4.7532 2.7689 2.3548 20 6 4.8295 3.2394 3.6522 21 6 4.1430 4.3834 4.0143 22 6 3.3840 5.0602 3.0765 23 17 2.5222 6.4972 3.5303 24 6 3.3124 4.5917 1.7764 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.3260 5.2016 -1.3950 31 1 6.0318 5.0673 0.2335 32 1 7.7155 7.9988 -1.2269 33 1 5.2864 1.8728 2.0734 34 1 5.4220 2.7108 4.3842 35 1 4.1989 4.7483 5.0291 36 1 2.7194 5.1193 1.0441 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:46 Heat of formation + Delta-G solvation = -78.364298 kcal Electronic energy + Delta-G solvation = -21091.895154 eV Core-core repulsion = 17692.968524 eV Total energy + Delta-G solvation = -3398.926629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.053 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.53798 -39.15348 -36.64775 -36.35648 -33.25480 -33.11032 -31.70225 -30.66641 -28.55953 -28.00456 -23.72010 -23.07655 -22.64400 -22.10546 -20.84286 -17.77260 -17.26143 -16.87218 -16.45326 -16.06189 -15.61818 -15.47385 -14.79342 -14.45344 -14.25617 -13.70389 -13.59228 -13.24385 -13.09884 -13.03716 -12.59049 -12.37717 -12.22477 -11.97752 -11.73218 -11.54378 -11.43107 -11.40113 -10.92840 -10.82584 -10.73078 -10.59078 -10.44717 -10.15810 -9.61511 -9.08175 -8.77473 -8.66096 -8.51913 -6.84035 -6.22215 -4.27146 1.13762 1.30992 1.90035 2.15157 2.36709 2.89242 3.23846 3.31307 3.36901 3.63990 3.83999 4.33334 4.53005 4.69652 4.78440 4.83103 4.87517 5.11240 5.12004 5.15236 5.18323 5.36991 5.45697 5.52376 5.60663 5.76163 5.78935 5.88109 6.23752 6.37871 6.41690 6.52725 6.83004 7.02026 7.07628 7.71391 7.79495 7.95359 8.74511 9.36285 10.88863 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.005039 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.552839 B = 5554.993950 C = 7561.523721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.491 3.509 5 O -0.482 6.482 6 C -0.033 4.033 7 H 0.119 0.881 8 S -0.218 6.218 9 C 0.081 3.919 10 C -0.513 4.513 11 H 0.068 0.932 12 C 0.068 3.932 13 N -0.889 5.889 14 Si 0.906 3.094 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.281 1.281 18 C -0.064 4.064 19 C -0.085 4.085 20 C -0.107 4.107 21 C -0.107 4.107 22 C -0.032 4.032 23 Cl -0.074 7.074 24 C -0.088 4.088 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.266 0.734 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.159 -8.314 8.346 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.271 6.271 4 C 0.331 3.669 5 O -0.368 6.368 6 C -0.161 4.161 7 H 0.137 0.863 8 S 0.013 5.987 9 C -0.066 4.066 10 C -0.553 4.553 11 H 0.086 0.914 12 C -0.136 4.136 13 N -0.527 5.527 14 Si 0.733 3.267 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.067 4.067 19 C -0.104 4.104 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.059 4.059 23 Cl -0.045 7.045 24 C -0.108 4.108 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.433 -9.229 8.008 17.432 hybrid contribution 0.139 1.421 -0.010 1.428 sum -12.294 -7.808 7.998 16.616 Atomic orbital electron populations 1.21800 0.92640 1.02839 1.03609 1.23037 0.95301 0.80248 1.02688 1.86507 1.24080 1.32332 1.84184 1.22586 0.80650 0.91038 0.72596 1.90678 1.60158 1.42108 1.43811 1.21837 1.02671 0.94157 0.97476 0.86280 1.87192 1.11245 1.20420 1.79877 1.21222 1.00261 0.84309 1.00813 1.20624 0.99009 0.93218 1.42443 0.91383 1.24933 0.98321 0.95207 0.95143 1.69963 1.37808 0.98311 1.46569 0.86305 0.83188 0.78467 0.78777 1.19374 1.20685 1.20685 1.19315 0.98402 0.95893 0.93054 1.21235 0.96523 1.00177 0.92512 1.21046 0.99135 0.96014 0.96348 1.21053 0.96752 0.95574 0.99235 1.20751 0.99523 0.90821 0.94790 1.98358 1.75796 1.37676 1.92659 1.20881 0.99283 0.95893 0.94764 0.91399 0.90295 0.91466 0.91080 0.91233 0.94454 0.94055 0.92483 0.84475 0.84842 0.84999 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.15 0.38 -0.80 16 2 C 0.06 0.67 6.19 37.15 0.23 0.90 16 3 O -0.35 -5.02 10.22 -39.24 -0.40 -5.42 16 4 C 0.49 8.17 6.70 36.01 0.24 8.41 16 5 O -0.48 -8.96 15.89 -18.75 -0.30 -9.26 16 6 C -0.03 -0.57 2.92 -29.03 -0.08 -0.66 16 7 H 0.12 1.92 7.88 -51.92 -0.41 1.51 16 8 S -0.22 -4.72 20.00 -107.50 -2.15 -6.87 16 9 C 0.08 2.05 5.48 36.01 0.20 2.25 16 10 C -0.51 -14.25 9.13 -34.44 -0.31 -14.56 16 11 H 0.07 1.90 7.71 -52.49 -0.40 1.50 16 12 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 13 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 14 Si 0.91 21.21 29.54 -169.99 -5.02 16.18 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.06 -1.06 4.40 -104.63 -0.46 -1.52 16 19 C -0.09 -1.34 8.88 -39.58 -0.35 -1.69 16 20 C -0.11 -1.43 10.05 -39.59 -0.40 -1.83 16 21 C -0.11 -1.41 9.83 -39.54 -0.39 -1.80 16 22 C -0.03 -0.47 6.32 -39.49 -0.25 -0.72 16 23 Cl -0.07 -0.99 28.96 -51.86 -1.50 -2.49 16 24 C -0.09 -1.36 9.46 -39.55 -0.37 -1.74 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.98 8.14 -51.92 -0.42 0.55 16 31 H 0.04 1.10 8.00 -51.93 -0.42 0.68 16 32 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.14 2.22 8.05 -52.49 -0.42 1.80 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.14 1.95 7.94 -52.49 -0.42 1.53 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -30.44 347.16 -9.66 -40.09 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.58 Total: -0.75 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -1.67 Total: -11.97 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.74 Total: -24.75 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.70 Total: -14.68 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -4.72 SS G_CDS: -2.15 Total: -6.87 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.44 -9.66 -40.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.270 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds