Wall clock time and date at job start Tue Mar 31 2020 10:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45200 * 109.47665 * 2 1 4 4 C 1.34224 * 117.00203 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00087 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00012 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.46959 * 324.99858 * 6 4 3 8 8 S 1.81401 * 109.47307 * 204.99890 * 6 4 3 9 9 C 1.81396 * 103.00100 * 174.99999 * 8 6 4 10 10 C 1.50701 * 109.47105 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99671 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00040 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99883 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99968 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47160 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47318 * 119.99886 * 14 12 10 17 17 H 1.48506 * 109.46877 * 239.99874 * 14 12 10 18 18 C 1.50703 * 109.47227 * 84.99860 * 6 4 3 19 19 C 1.38265 * 119.99306 * 59.72116 * 18 6 4 20 20 C 1.38217 * 120.02753 * 179.76448 * 19 18 6 21 21 C 1.38240 * 120.01219 * 0.51544 * 20 19 18 22 22 C 1.38338 * 119.98514 * 359.74489 * 21 20 19 23 23 Cl 1.73595 * 120.01212 * 180.02562 * 22 21 20 24 24 C 1.38192 * 119.99205 * 239.99986 * 18 6 4 25 25 H 1.08999 * 109.47443 * 59.99369 * 1 2 3 26 26 H 1.08996 * 109.47903 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46942 * 300.00008 * 1 2 3 28 28 H 1.09000 * 109.46942 * 239.99992 * 2 1 3 29 29 H 1.09003 * 109.47079 * 120.00294 * 2 1 3 30 30 H 1.09004 * 109.47026 * 300.00121 * 9 8 6 31 31 H 1.08994 * 109.47210 * 59.99878 * 9 8 6 32 32 H 0.96997 * 119.99792 * 180.02562 * 13 12 10 33 33 H 1.08000 * 119.98698 * 0.02562 * 19 18 6 34 34 H 1.08000 * 119.99334 * 180.25473 * 20 19 18 35 35 H 1.07996 * 120.00779 * 179.71653 * 21 20 19 36 36 H 1.07994 * 120.01192 * 0.02562 * 24 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5864 -0.0015 6 6 3.9208 2.9372 0.0000 7 1 3.2815 3.5951 -0.5888 8 16 5.5839 2.9039 -0.7236 9 6 6.0410 4.6585 -0.7769 10 6 7.4216 4.8004 -1.3642 11 1 7.9693 3.9227 -1.6740 12 6 7.9857 6.0506 -1.5051 13 7 7.3188 7.1193 -1.1274 14 14 9.6967 6.2264 -2.2339 15 1 10.2293 4.8832 -2.5765 16 1 9.6289 7.0603 -3.4607 17 1 10.5924 6.8755 -1.2430 18 6 3.9991 3.4480 1.4157 19 6 4.7532 2.7689 2.3548 20 6 4.8295 3.2394 3.6522 21 6 4.1430 4.3834 4.0143 22 6 3.3840 5.0602 3.0765 23 17 2.5222 6.4972 3.5303 24 6 3.3124 4.5917 1.7764 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.3260 5.2016 -1.3950 31 1 6.0318 5.0673 0.2335 32 1 7.7155 7.9988 -1.2269 33 1 5.2864 1.8728 2.0734 34 1 5.4220 2.7108 4.3842 35 1 4.1989 4.7483 5.0291 36 1 2.7194 5.1193 1.0441 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413017289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:45 Heat of formation + Delta-G solvation = -92.542255 kcal Electronic energy + Delta-G solvation = -21092.509956 eV Core-core repulsion = 17692.968524 eV Total energy + Delta-G solvation = -3399.541432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.053 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.80671 -40.30753 -37.85535 -37.48619 -35.29999 -34.40864 -32.54466 -31.81224 -30.65898 -29.23681 -25.34191 -24.47624 -23.80823 -23.20677 -22.08718 -19.05987 -18.79254 -18.38917 -17.83344 -17.49281 -16.95962 -16.64051 -16.51341 -15.80774 -15.40794 -15.02478 -14.74508 -14.54188 -14.40587 -14.37450 -14.25378 -14.00860 -13.59489 -12.96622 -12.80304 -12.71665 -12.66820 -12.60160 -12.55327 -12.51460 -12.06942 -11.92160 -11.74270 -11.58543 -11.57363 -10.85308 -10.74955 -9.97705 -9.74832 -8.60540 -8.33236 -6.46459 -0.08366 0.14977 0.44493 0.93646 1.12879 1.40023 1.40843 1.54560 1.64205 1.85698 2.36775 2.62315 3.01854 3.25999 3.53592 3.65271 3.93184 3.99026 4.05033 4.05794 4.18592 4.31899 4.35914 4.60030 4.75399 4.80240 4.91231 4.92164 4.96714 5.06978 5.11720 5.25210 5.33565 5.35802 5.56503 5.70686 5.86593 6.51704 6.60264 7.21635 8.78629 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.005039 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.552839 B = 5554.993950 C = 7561.523721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.352 6.352 4 C 0.499 3.501 5 O -0.506 6.506 6 C -0.024 4.024 7 H 0.128 0.872 8 S -0.231 6.231 9 C 0.093 3.907 10 C -0.537 4.537 11 H 0.061 0.939 12 C 0.021 3.979 13 N -0.920 5.920 14 Si 0.973 3.027 15 H -0.266 1.266 16 H -0.272 1.272 17 H -0.273 1.273 18 C -0.082 4.082 19 C -0.101 4.101 20 C -0.101 4.101 21 C -0.101 4.101 22 C -0.041 4.041 23 Cl -0.064 7.064 24 C -0.100 4.100 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.270 0.730 33 H 0.127 0.873 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.516 -8.706 9.359 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.269 6.269 4 C 0.340 3.660 5 O -0.394 6.394 6 C -0.153 4.153 7 H 0.146 0.854 8 S 0.000 6.000 9 C -0.055 4.055 10 C -0.576 4.576 11 H 0.079 0.921 12 C -0.180 4.180 13 N -0.558 5.558 14 Si 0.796 3.204 15 H -0.190 1.190 16 H -0.197 1.197 17 H -0.198 1.198 18 C -0.084 4.084 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.068 4.068 23 Cl -0.035 7.035 24 C -0.120 4.120 25 H 0.087 0.913 26 H 0.124 0.876 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.036 0.964 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.184 0.816 35 H 0.180 0.820 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.814 -9.624 9.019 18.389 hybrid contribution 0.096 1.490 -0.245 1.513 sum -12.718 -8.134 8.774 17.462 Atomic orbital electron populations 1.21834 0.89909 1.04638 1.03779 1.23442 0.97369 0.78470 1.02952 1.86500 1.22282 1.34603 1.83473 1.22314 0.81428 0.90151 0.72073 1.90664 1.60899 1.42619 1.45200 1.21767 0.99716 0.95431 0.98358 0.85363 1.86992 1.15098 1.17082 1.80818 1.20818 0.99165 0.86689 0.98809 1.20924 1.00192 0.93415 1.43067 0.92098 1.25815 1.02286 0.94736 0.95196 1.70058 1.39588 0.98865 1.47277 0.85281 0.78277 0.78548 0.78274 1.19050 1.19738 1.19791 1.19273 0.99879 0.96804 0.92483 1.21314 0.96861 1.00189 0.93677 1.21406 0.98683 0.95925 0.95863 1.21437 0.95334 0.94899 1.00302 1.20928 0.99842 0.91306 0.94727 1.98360 1.75601 1.37090 1.92472 1.20976 0.99664 0.95732 0.95658 0.91269 0.87627 0.91235 0.91040 0.90863 0.96354 0.96148 0.92052 0.85488 0.81635 0.82021 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 10.29 71.98 0.74 -1.22 16 2 C 0.05 1.06 6.19 71.98 0.45 1.50 16 3 O -0.35 -9.79 10.22 -51.36 -0.52 -10.31 16 4 C 0.50 16.67 6.70 71.24 0.48 17.15 16 5 O -0.51 -18.96 15.89 21.96 0.35 -18.62 16 6 C -0.02 -0.84 2.92 29.10 0.09 -0.76 16 7 H 0.13 4.25 7.88 -2.39 -0.02 4.23 16 8 S -0.23 -10.29 20.00 -56.49 -1.13 -11.42 16 9 C 0.09 4.87 5.48 71.24 0.39 5.26 16 10 C -0.54 -30.48 9.13 25.60 0.23 -30.24 16 11 H 0.06 3.47 7.71 -2.91 -0.02 3.45 16 12 C 0.02 1.18 5.46 84.65 0.46 1.64 16 13 N -0.92 -53.36 13.29 21.45 0.28 -53.08 16 14 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 C -0.08 -2.73 4.40 -19.87 -0.09 -2.82 16 19 C -0.10 -3.16 8.88 22.27 0.20 -2.96 16 20 C -0.10 -2.51 10.05 22.27 0.22 -2.28 16 21 C -0.10 -2.44 9.83 22.29 0.22 -2.22 16 22 C -0.04 -1.16 6.32 22.33 0.14 -1.01 16 23 Cl -0.06 -1.63 28.96 -2.72 -0.08 -1.71 16 24 C -0.10 -3.10 9.46 22.29 0.21 -2.89 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.02 1.13 8.00 -2.39 -0.02 1.11 16 32 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.13 4.17 8.05 -2.91 -0.02 4.15 16 34 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 36 H 0.14 4.04 7.94 -2.91 -0.02 4.02 16 Total: -1.00 -65.99 347.16 5.75 -60.24 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.08 Total: 10.23 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 3.74 Total: -20.85 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.28 Total: -53.08 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.18 Total: -28.93 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -10.29 SS G_CDS: -1.13 Total: -11.42 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -65.99 5.75 -60.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.298 kcal (2) G-P(sol) polarization free energy of solvation -65.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds