Wall clock time and date at job start Tue Mar 31 2020 10:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45208 * 109.47252 * 2 1 4 4 C 1.34230 * 116.99800 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00274 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99432 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47722 * 40.00557 * 6 4 3 8 8 S 1.81408 * 109.46950 * 160.00182 * 6 4 3 9 9 C 1.81397 * 102.99919 * 184.99720 * 8 6 4 10 10 C 1.50704 * 109.47104 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99491 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99927 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99613 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00139 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47045 * 89.99639 * 14 12 10 16 16 H 1.48500 * 109.47295 * 209.99703 * 14 12 10 17 17 H 1.48501 * 109.47275 * 329.99818 * 14 12 10 18 18 C 1.50706 * 109.47294 * 279.99844 * 6 4 3 19 19 C 1.38259 * 119.98950 * 120.00143 * 18 6 4 20 20 C 1.38225 * 120.02462 * 180.02562 * 19 18 6 21 21 C 1.38236 * 120.01268 * 359.97438 * 20 19 18 22 22 C 1.38338 * 119.98677 * 0.02562 * 21 20 19 23 23 Cl 1.73605 * 120.01373 * 180.02562 * 22 21 20 24 24 C 1.38199 * 119.99331 * 299.72922 * 18 6 4 25 25 H 1.08994 * 109.47422 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47177 * 300.00258 * 1 2 3 27 27 H 1.09005 * 109.46938 * 59.99865 * 1 2 3 28 28 H 1.09001 * 109.47678 * 239.99788 * 2 1 3 29 29 H 1.09004 * 109.46920 * 119.99585 * 2 1 3 30 30 H 1.09004 * 109.47283 * 300.00156 * 9 8 6 31 31 H 1.08994 * 109.47130 * 60.00070 * 9 8 6 32 32 H 0.96997 * 120.00008 * 179.97438 * 13 12 10 33 33 H 1.07999 * 119.99223 * 359.97438 * 19 18 6 34 34 H 1.07999 * 119.99428 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.01100 * 180.02562 * 21 20 19 36 36 H 1.07996 * 120.00112 * 0.02562 * 24 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.3319 3.5745 0.6599 8 16 5.6367 2.8822 0.5858 9 6 6.0989 4.6348 0.6605 10 6 7.5225 4.7589 1.1391 11 1 8.0923 3.8721 1.3744 12 6 8.0978 6.0044 1.2757 13 7 9.3399 6.1127 1.6938 14 14 7.1124 7.5381 0.8681 15 1 6.4011 8.0072 2.0843 16 1 8.0298 8.6032 0.3894 17 1 6.1229 7.2232 -0.1935 18 6 3.8854 3.4951 -1.3996 19 6 3.1731 4.6498 -1.6657 20 6 3.1398 5.1617 -2.9492 21 6 3.8192 4.5195 -3.9675 22 6 4.5321 3.3642 -3.7019 23 17 5.3862 2.5575 -4.9801 24 6 4.5697 2.8554 -2.4157 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 6.0089 5.0769 -0.3318 31 1 5.4368 5.1559 1.3518 32 1 9.7448 6.9889 1.7896 33 1 2.6418 5.1516 -0.8706 34 1 2.5835 6.0639 -3.1564 35 1 3.7935 4.9197 -4.9704 36 1 5.1293 1.9556 -2.2068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017290.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:48 Heat of formation + Delta-G solvation = -73.026010 kcal Electronic energy + Delta-G solvation = -21223.295254 eV Core-core repulsion = 17824.600111 eV Total energy + Delta-G solvation = -3398.695144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.053 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60963 -39.26545 -36.69072 -36.45023 -33.32147 -33.06607 -31.75317 -30.79108 -29.38935 -28.11602 -23.74772 -22.83444 -22.59120 -22.15820 -20.91978 -17.83549 -17.36755 -17.07229 -16.60826 -16.34610 -15.76817 -15.62353 -14.77748 -14.36796 -14.19051 -13.79861 -13.77101 -13.31104 -13.26030 -13.22532 -12.88422 -12.64213 -12.32790 -12.05325 -11.80648 -11.71555 -11.52140 -11.50150 -10.90821 -10.86412 -10.64656 -10.64229 -10.46667 -10.19049 -9.75554 -9.20692 -8.86369 -8.76134 -8.66036 -6.97208 -6.21901 -4.24966 1.00779 1.19536 1.79754 2.11979 2.22689 2.79380 3.17469 3.24834 3.26034 3.44908 3.69204 4.27124 4.40099 4.59926 4.73681 4.75966 4.82656 4.96360 5.06225 5.08390 5.09185 5.16714 5.40176 5.46038 5.56188 5.57869 5.74217 5.82524 6.16376 6.22500 6.32910 6.37794 6.48964 6.62315 6.69930 7.35972 7.72592 8.24807 8.80023 9.32997 10.90033 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.005309 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.028999 B = 5272.553699 C = 6669.943839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.490 3.510 5 O -0.479 6.479 6 C -0.042 4.042 7 H 0.122 0.878 8 S -0.177 6.177 9 C 0.036 3.964 10 C -0.515 4.515 11 H 0.085 0.915 12 C 0.083 3.917 13 N -0.888 5.888 14 Si 0.875 3.125 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.264 1.264 18 C -0.067 4.067 19 C -0.097 4.097 20 C -0.108 4.108 21 C -0.107 4.107 22 C -0.032 4.032 23 Cl -0.070 7.070 24 C -0.080 4.080 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.032 0.968 32 H 0.269 0.731 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.900 -5.575 -9.273 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.271 6.271 4 C 0.330 3.670 5 O -0.364 6.364 6 C -0.171 4.171 7 H 0.140 0.860 8 S 0.053 5.947 9 C -0.112 4.112 10 C -0.554 4.554 11 H 0.103 0.897 12 C -0.122 4.122 13 N -0.526 5.526 14 Si 0.701 3.299 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.189 1.189 18 C -0.070 4.070 19 C -0.117 4.117 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.059 4.059 23 Cl -0.041 7.041 24 C -0.100 4.100 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.833 -6.774 -9.034 21.107 hybrid contribution -0.928 1.825 -0.494 2.106 sum -18.761 -4.949 -9.528 21.616 Atomic orbital electron populations 1.21800 0.92603 1.02897 1.03545 1.23056 0.95303 0.80152 1.02797 1.86493 1.23962 1.32427 1.84222 1.22511 0.80753 0.90933 0.72846 1.90702 1.60108 1.42029 1.43520 1.21964 1.02993 0.94287 0.97823 0.85967 1.87417 1.04817 1.16820 1.85598 1.21580 1.01457 0.88233 0.99933 1.20374 0.93855 0.95037 1.46136 0.89750 1.24813 0.94781 0.98446 0.94136 1.69855 1.12651 1.24618 1.45445 0.86845 0.80513 0.83108 0.79406 1.19817 1.20724 1.18852 1.19352 0.98563 0.96420 0.92626 1.21139 0.98005 0.95098 0.97411 1.21030 0.99512 0.99901 0.92172 1.21070 0.97143 0.94055 1.00360 1.20804 0.99314 0.96096 0.89665 1.98365 1.76269 1.79231 1.50284 1.21005 0.97864 1.00902 0.90230 0.90245 0.91423 0.91488 0.91163 0.91013 0.94249 0.94992 0.92132 0.85070 0.84793 0.84887 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 37.16 0.38 -0.73 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.35 -4.77 10.22 -39.26 -0.40 -5.17 16 4 C 0.49 7.87 6.76 36.00 0.24 8.11 16 5 O -0.48 -8.84 15.79 -18.75 -0.30 -9.13 16 6 C -0.04 -0.69 2.92 -29.03 -0.08 -0.77 16 7 H 0.12 1.75 7.88 -51.92 -0.41 1.34 16 8 S -0.18 -3.75 19.93 -107.50 -2.14 -5.89 16 9 C 0.04 0.84 4.55 36.01 0.16 1.01 16 10 C -0.51 -14.51 9.68 -34.44 -0.33 -14.84 16 11 H 0.08 2.63 7.96 -52.49 -0.42 2.21 16 12 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 13 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 14 Si 0.87 20.57 27.47 -169.99 -4.67 15.90 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 18 C -0.07 -1.03 4.40 -104.63 -0.46 -1.49 16 19 C -0.10 -1.27 9.67 -39.58 -0.38 -1.65 16 20 C -0.11 -1.25 10.05 -39.59 -0.40 -1.65 16 21 C -0.11 -1.31 9.83 -39.55 -0.39 -1.70 16 22 C -0.03 -0.46 6.32 -39.50 -0.25 -0.71 16 23 Cl -0.07 -0.94 28.96 -51.86 -1.50 -2.44 16 24 C -0.08 -1.28 8.66 -39.55 -0.34 -1.62 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.04 0.92 7.05 -51.92 -0.37 0.56 16 31 H 0.03 0.72 7.57 -51.93 -0.39 0.32 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.13 1.44 7.95 -52.49 -0.42 1.02 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.14 2.43 8.05 -52.49 -0.42 2.01 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -31.59 343.46 -9.33 -40.92 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.55 Total: -0.57 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.72 Total: -12.92 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.77 Total: -25.86 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.70 Total: -14.31 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -2.14 Total: -5.89 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.59 -9.33 -40.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017290.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.102 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds