Wall clock time and date at job start Tue Mar 31 2020 10:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99688 * 2 1 4 4 H 1.48500 * 109.47520 * 270.00237 * 3 2 1 5 5 H 1.48502 * 109.47002 * 30.00582 * 3 2 1 6 6 H 1.48504 * 109.47004 * 150.00485 * 3 2 1 7 7 C 1.37868 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00291 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00274 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47543 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99943 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99914 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99600 * 179.97438 * 11 10 9 14 14 N 1.46498 * 109.46769 * 179.97438 * 13 11 10 15 15 C 1.34777 * 119.99828 * 179.72341 * 14 13 11 16 16 O 1.21583 * 119.99943 * 0.28074 * 15 14 13 17 17 C 1.47623 * 120.00136 * 180.27895 * 15 14 13 18 18 C 1.39887 * 120.17861 * 89.72786 * 17 15 14 19 19 F 1.35104 * 120.10251 * 359.97438 * 18 17 15 20 20 C 1.38237 * 119.79294 * 179.72233 * 18 17 15 21 21 C 1.38293 * 120.15455 * 0.55598 * 20 18 17 22 22 C 1.38349 * 120.36034 * 359.71455 * 21 20 18 23 23 C 1.38075 * 120.20300 * 0.02562 * 22 21 20 24 24 Cl 1.73607 * 120.07855 * 180.02562 * 23 22 21 25 25 H 0.97004 * 120.00073 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47280 * 59.98954 * 9 7 2 27 27 H 1.09008 * 109.46977 * 299.99483 * 9 7 2 28 28 H 0.96995 * 119.99612 * 359.97438 * 10 9 7 29 29 H 1.09004 * 109.47210 * 60.00194 * 13 11 10 30 30 H 1.08994 * 109.47121 * 300.00164 * 13 11 10 31 31 H 0.97001 * 120.00384 * 0.02562 * 14 13 11 32 32 H 1.07998 * 119.92386 * 180.29497 * 20 18 17 33 33 H 1.07996 * 119.82112 * 179.69610 * 21 20 18 34 34 H 1.08000 * 119.90042 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3251 -2.8214 -0.0020 12 8 6.1131 -1.8995 -0.0034 13 6 5.8274 -4.2422 -0.0013 14 7 7.2924 -4.2421 -0.0032 15 6 7.9663 -5.4093 0.0027 16 8 7.3584 -6.4622 0.0044 17 6 9.4425 -5.4092 0.0070 18 6 10.1422 -5.3994 1.2182 19 9 9.4691 -5.3894 2.3896 20 6 11.5246 -5.4053 1.2130 21 6 12.2147 -5.4092 0.0146 22 6 11.5292 -5.4132 -1.1871 23 6 10.1485 -5.4128 -1.1992 24 17 9.2916 -5.4186 -2.7090 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6802 0.8887 27 1 3.8745 -0.6800 -0.8912 28 1 3.3696 -3.3124 -0.0002 29 1 5.4633 -4.7568 -0.8906 30 1 5.4649 -4.7553 0.8894 31 1 7.7774 -3.4021 -0.0043 32 1 12.0669 -5.4025 2.1469 33 1 13.2947 -5.4088 0.0168 34 1 12.0757 -5.4167 -2.1186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427626745.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:11 Heat of formation + Delta-G solvation = -98.486789 kcal Electronic energy + Delta-G solvation = -22565.064732 eV Core-core repulsion = 18631.345102 eV Total energy + Delta-G solvation = -3933.719631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.41753 -40.45668 -39.32780 -38.48913 -36.93531 -34.80289 -34.23110 -32.46876 -31.95905 -31.04466 -29.04201 -26.98776 -24.32155 -23.34374 -22.14901 -20.90256 -20.20813 -18.87665 -17.98267 -17.28876 -17.01771 -16.63635 -16.03574 -15.96307 -15.63521 -15.49594 -15.25303 -14.93068 -14.41942 -14.23684 -13.93029 -13.65953 -13.60745 -12.93981 -12.84675 -12.66153 -12.40331 -12.18021 -11.97182 -11.85815 -11.48812 -11.11425 -10.83052 -10.35420 -10.03621 -9.59686 -9.55068 -9.48407 -9.30964 -9.28420 -8.84588 -8.32011 -6.26135 -4.29360 0.27383 0.43833 1.50677 2.22737 2.66903 2.88305 2.96170 3.22823 3.29831 3.36782 3.60834 3.83026 4.13121 4.28458 4.30290 4.37142 4.56248 4.79099 5.08678 5.11844 5.20273 5.33591 5.37545 5.39127 5.43696 5.58895 6.05736 6.10824 6.68948 6.97175 7.02664 7.25560 7.29385 7.86937 8.01436 8.38495 8.61182 8.75832 9.32732 10.85690 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.002775 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.436968 B =10088.835903 C =10296.432470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.696 5.696 11 C 0.496 3.504 12 O -0.556 6.556 13 C 0.097 3.903 14 N -0.699 5.699 15 C 0.566 3.434 16 O -0.519 6.519 17 C -0.152 4.152 18 C 0.148 3.852 19 F -0.121 7.121 20 C -0.151 4.151 21 C -0.062 4.062 22 C -0.122 4.122 23 C 0.020 3.980 24 Cl -0.037 7.037 25 H 0.268 0.732 26 H 0.028 0.972 27 H 0.023 0.977 28 H 0.401 0.599 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.414 0.586 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.894 -12.098 -1.011 28.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.099 3.901 10 N -0.344 5.344 11 C 0.280 3.720 12 O -0.436 6.436 13 C -0.030 4.030 14 N -0.353 5.353 15 C 0.350 3.650 16 O -0.395 6.395 17 C -0.157 4.157 18 C 0.127 3.873 19 F -0.099 7.099 20 C -0.170 4.170 21 C -0.080 4.080 22 C -0.141 4.141 23 C -0.008 4.008 24 Cl -0.007 7.007 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.235 0.765 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.253 0.747 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 25.656 -12.030 -1.103 28.358 hybrid contribution -0.058 0.943 0.078 0.948 sum 25.598 -11.087 -1.025 27.915 Atomic orbital electron populations 1.69878 1.06217 1.27510 1.49118 1.24793 0.94801 0.99179 0.93807 0.86813 0.80534 0.83244 0.79057 1.19817 1.20834 1.18540 1.21069 0.88357 0.95357 1.53649 0.90098 1.19557 0.95446 0.78144 0.96999 1.46117 1.05260 1.11589 1.71450 1.20323 0.83819 0.90166 0.77663 1.90647 1.55408 1.45841 1.51712 1.21195 0.80703 0.96027 1.05031 1.45633 1.06773 1.09149 1.73721 1.17714 0.85958 0.84261 0.77074 1.90843 1.68799 1.30992 1.48834 1.19773 0.94594 1.09093 0.92245 1.17468 0.89929 0.99814 0.80050 1.91595 1.80420 1.93212 1.44652 1.21248 0.91557 1.03388 1.00758 1.21141 1.00894 0.95500 0.90507 1.21121 0.91315 1.01598 1.00061 1.20717 0.92510 1.00859 0.86668 1.98440 1.76911 1.96326 1.29060 0.92173 0.95458 0.95906 0.76497 0.88119 0.88132 0.74735 0.83248 0.83360 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.96 55.43 0.77 -25.36 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.55 -14.68 9.83 -34.44 -0.34 -15.01 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.22 5.24 4.50 -5.20 -0.02 5.21 16 10 N -0.70 -13.40 5.55 -61.47 -0.34 -13.74 16 11 C 0.50 8.85 7.90 -10.98 -0.09 8.76 16 12 O -0.56 -11.57 15.67 5.56 0.09 -11.49 16 13 C 0.10 1.38 6.15 -5.19 -0.03 1.35 16 14 N -0.70 -9.80 5.52 -62.50 -0.35 -10.14 16 15 C 0.57 8.10 5.95 -12.43 -0.07 8.03 16 16 O -0.52 -8.85 17.11 5.29 0.09 -8.76 16 17 C -0.15 -1.78 5.64 -104.88 -0.59 -2.37 16 18 C 0.15 1.52 7.29 -38.97 -0.28 1.24 16 19 F -0.12 -1.44 16.83 2.25 0.04 -1.40 16 20 C -0.15 -1.01 10.01 -39.56 -0.40 -1.41 16 21 C -0.06 -0.32 10.03 -39.52 -0.40 -0.71 16 22 C -0.12 -0.80 9.81 -39.60 -0.39 -1.19 16 23 C 0.02 0.20 6.35 -39.07 -0.25 -0.05 16 24 Cl -0.04 -0.39 28.04 -51.86 -1.45 -1.85 16 25 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 27 H 0.02 0.57 7.57 -51.92 -0.39 0.17 16 28 H 0.40 6.75 8.32 -40.82 -0.34 6.41 16 29 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.41 5.74 7.42 -40.82 -0.30 5.44 16 32 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.15 0.25 8.06 -52.49 -0.42 -0.17 16 34 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 LS Contribution 326.96 15.07 4.93 4.93 Total: -1.00 -33.47 326.96 -6.95 -40.43 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -3.10 Total: 5.09 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -2.96 Total: 5.93 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.09 Total: -49.24 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.18 Total: -20.25 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.45 Total: -1.85 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.47 -6.95 -40.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427626745.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.061 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds