Wall clock time and date at job start Tue Mar 31 2020 10:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46498 * 109.46967 * 2 1 4 4 C 1.46505 * 119.99720 * 269.99389 * 3 2 1 5 5 C 1.50697 * 109.47516 * 270.00144 * 4 3 2 6 6 H 1.08007 * 119.99997 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00136 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00383 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99884 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47250 * 90.00143 * 9 7 5 11 11 H 1.48504 * 109.47009 * 209.99764 * 9 7 5 12 12 H 1.48499 * 109.47244 * 329.99966 * 9 7 5 13 13 C 1.37657 * 120.00318 * 90.00046 * 3 2 1 14 14 N 1.30858 * 124.96268 * 359.97438 * 13 3 2 15 15 C 1.36139 * 108.69878 * 180.02562 * 14 13 3 16 16 C 1.39581 * 133.64264 * 180.02562 * 15 14 13 17 17 C 1.37878 * 119.74287 * 180.02562 * 16 15 14 18 18 Cl 1.73601 * 119.81010 * 180.02562 * 17 16 15 19 19 C 1.38735 * 120.37153 * 0.02562 * 17 16 15 20 20 C 1.38127 * 120.43637 * 0.02562 * 19 17 16 21 21 Cl 1.73599 * 120.05373 * 179.97438 * 20 19 17 22 22 C 1.38643 * 119.88812 * 0.26325 * 20 19 17 23 23 O 1.34451 * 124.96012 * 179.97438 * 13 3 2 24 24 H 1.08999 * 109.47609 * 300.00010 * 1 2 3 25 25 H 1.08998 * 109.47488 * 60.00888 * 1 2 3 26 26 H 1.09007 * 109.47067 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47468 * 239.99457 * 2 1 3 28 28 H 1.09005 * 109.47195 * 119.99364 * 2 1 3 29 29 H 1.09002 * 109.46741 * 30.00243 * 4 3 2 30 30 H 1.08993 * 109.47018 * 149.99890 * 4 3 2 31 31 H 0.97003 * 120.00710 * 180.02562 * 8 7 5 32 32 H 1.08002 * 120.13372 * 359.97438 * 16 15 14 33 33 H 1.08001 * 119.78274 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0957 7 6 4.1490 2.3895 -2.8780 8 7 3.3491 3.1255 -3.6182 9 14 5.9131 2.0954 -3.4175 10 1 5.9760 0.8742 -4.2600 11 1 6.3923 3.2624 -4.2009 12 1 6.7735 1.9158 -2.2205 13 6 2.2476 2.0302 1.1921 14 7 2.0626 1.5083 2.3778 15 6 2.3901 2.4359 3.3189 16 6 2.3893 2.4338 4.7147 17 6 2.7870 3.5618 5.4006 18 17 2.7873 3.5610 7.1366 19 6 3.1870 4.6974 4.7112 20 6 3.1912 4.7123 3.3300 21 17 3.6930 6.1389 2.4775 22 6 2.7884 3.5881 2.6258 23 8 2.6946 3.2929 1.3083 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.5817 1.6875 -2.0284 30 1 2.0954 3.1409 -1.1386 31 1 3.6749 3.5153 -4.4445 32 1 2.0775 1.5524 5.2554 33 1 3.4971 5.5756 5.2581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432839380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:48 Heat of formation + Delta-G solvation = 14.987870 kcal Electronic energy + Delta-G solvation = -21129.591558 eV Core-core repulsion = 17629.128932 eV Total energy + Delta-G solvation = -3500.462625 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 314.033 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.23831 -39.66579 -38.42519 -37.86126 -37.23462 -35.53290 -34.78093 -32.14354 -31.45333 -30.67483 -28.63454 -25.29487 -25.04564 -23.97818 -23.22347 -21.82338 -19.38456 -18.93390 -18.67224 -17.93226 -17.89984 -16.80371 -16.53163 -16.05162 -15.82760 -15.23870 -15.02986 -14.56744 -14.54393 -14.08240 -13.91285 -13.56674 -13.43887 -13.14676 -13.01540 -12.79599 -12.76386 -12.61267 -12.37505 -12.24692 -12.06814 -12.02943 -11.92406 -11.66326 -11.44842 -10.70475 -10.47390 -9.67791 -8.74919 -8.24937 -6.45964 -0.45991 -0.16436 0.62946 0.88857 1.08917 1.36031 1.37111 1.39915 1.48474 2.13788 2.31031 2.35900 3.00880 3.32402 3.50502 3.82870 3.86619 4.02666 4.19994 4.32944 4.41431 4.57827 4.68841 4.85725 4.88559 4.90675 4.96989 5.01872 5.04535 5.14851 5.33209 5.53258 5.75866 5.90149 6.23525 6.58050 6.80293 7.25817 8.76412 Molecular weight = 314.03amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.004325 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.375093 B = 6471.880580 C = 7690.063477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 N -0.548 5.548 4 C 0.265 3.735 5 C -0.555 4.555 6 H 0.054 0.946 7 C 0.022 3.978 8 N -0.919 5.919 9 Si 0.961 3.039 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.275 1.275 13 C 0.519 3.481 14 N -0.564 5.564 15 C 0.085 3.915 16 C -0.073 4.073 17 C -0.007 4.007 18 Cl -0.028 7.028 19 C -0.096 4.096 20 C 0.008 3.992 21 Cl -0.050 7.050 22 C -0.038 4.038 23 O -0.237 6.237 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.009 0.991 31 H 0.270 0.730 32 H 0.167 0.833 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 -0.303 16.724 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.009 3.991 3 N -0.269 5.269 4 C 0.144 3.856 5 C -0.593 4.593 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.558 5.558 9 Si 0.786 3.214 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.200 1.200 13 C 0.219 3.781 14 N -0.309 5.309 15 C -0.030 4.030 16 C -0.095 4.095 17 C -0.036 4.036 18 Cl 0.001 6.999 19 C -0.116 4.116 20 C -0.020 4.020 21 Cl -0.020 7.020 22 C -0.090 4.090 23 O -0.129 6.129 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.079 0.921 32 H 0.185 0.815 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.990 -0.733 16.498 16.783 hybrid contribution 1.143 1.001 -1.084 1.866 sum -1.846 0.267 15.415 15.527 Atomic orbital electron populations 1.22095 0.94204 1.03679 1.01471 1.21707 0.95366 0.78018 1.03976 1.46543 1.65949 1.14345 1.00052 1.19105 0.96298 0.91456 0.78703 1.21661 0.97483 1.33004 1.07189 0.92819 1.25691 1.01956 0.94126 0.96103 1.70005 1.37631 1.33461 1.14684 0.85510 0.79333 0.78328 0.78279 1.18897 1.20471 1.20015 1.21985 0.88237 0.78462 0.89403 1.71103 1.35357 1.29322 0.95113 1.19746 0.99587 0.88550 0.95152 1.20163 1.01155 0.99494 0.88643 1.20260 1.02792 0.94143 0.86359 1.98388 1.96987 1.98593 1.05910 1.20804 1.01946 0.99952 0.88937 1.19560 1.04572 0.86277 0.91617 1.98395 1.89418 1.36795 1.77440 1.20071 1.09253 0.98500 0.81159 1.84596 1.71387 1.30870 1.26052 0.93381 0.93115 0.88350 0.88968 0.89484 0.93738 0.97335 0.92073 0.81535 0.79898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 10.24 71.98 0.74 -3.53 16 2 C 0.13 4.26 6.24 86.38 0.54 4.80 16 3 N -0.55 -23.14 2.53 -826.27 -2.09 -25.23 16 4 C 0.26 13.17 5.30 85.63 0.45 13.63 16 5 C -0.55 -29.95 9.39 25.60 0.24 -29.71 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.02 1.19 5.46 84.65 0.46 1.65 16 8 N -0.92 -51.98 13.29 21.44 0.28 -51.69 16 9 Si 0.96 42.80 29.54 68.60 2.03 44.83 16 10 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 13 C 0.52 22.31 8.37 179.31 1.50 23.81 16 14 N -0.56 -21.85 10.58 -306.53 -3.24 -25.10 16 15 C 0.08 2.94 7.23 39.28 0.28 3.23 16 16 C -0.07 -1.92 9.87 22.51 0.22 -1.70 16 17 C -0.01 -0.16 6.31 22.30 0.14 -0.02 16 18 Cl -0.03 -0.49 28.94 -2.72 -0.08 -0.56 16 19 C -0.10 -2.23 9.59 22.36 0.21 -2.02 16 20 C 0.01 0.24 6.32 22.34 0.14 0.38 16 21 Cl -0.05 -1.51 28.96 -2.72 -0.08 -1.58 16 22 C -0.04 -1.42 7.20 22.85 0.16 -1.25 16 23 O -0.24 -10.72 10.13 -14.48 -0.15 -10.86 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.09 2.96 8.07 -2.39 -0.02 2.94 16 28 H 0.09 2.73 7.60 -2.38 -0.02 2.71 16 29 H 0.04 2.23 8.07 -2.39 -0.02 2.21 16 30 H 0.01 0.47 7.66 -2.39 -0.02 0.46 16 31 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.18 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -61.08 324.88 2.92 -58.17 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 1.15 Total: 2.77 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 5.10 Total: 9.27 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -5.05 Total: -102.02 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.15 Total: -10.86 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.16 Total: -2.15 kcal Total: -61.08 2.92 -58.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432839380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.153 kcal (2) G-P(sol) polarization free energy of solvation -61.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds