Wall clock time and date at job start Tue Mar 31 2020 11:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00293 * 2 1 4 4 H 1.48502 * 109.46941 * 269.99991 * 3 2 1 5 5 H 1.48504 * 109.47210 * 29.99775 * 3 2 1 6 6 H 1.48495 * 109.47529 * 149.99853 * 3 2 1 7 7 C 1.37884 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99580 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99999 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46973 * 179.97438 * 9 7 2 11 11 S 1.65606 * 120.00212 * 164.99833 * 10 9 7 12 12 O 1.42096 * 104.27590 * 308.93441 * 11 10 9 13 13 O 1.42091 * 104.27893 * 181.06974 * 11 10 9 14 14 C 1.81410 * 104.44573 * 65.00050 * 11 10 9 15 15 C 1.53000 * 109.46769 * 180.02562 * 14 11 10 16 16 C 1.50696 * 109.47110 * 179.97438 * 15 14 11 17 17 C 1.38238 * 119.99764 * 89.99849 * 16 15 14 18 18 C 1.38234 * 119.99693 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00240 * 0.02562 * 18 17 16 20 20 N 1.48026 * 119.99930 * 179.97438 * 19 18 17 21 21 O 1.21793 * 119.99867 * 0.02562 * 20 19 18 22 22 O 1.21799 * 119.99956 * 179.97438 * 20 19 18 23 23 C 1.38233 * 120.00037 * 0.26327 * 19 18 17 24 24 C 1.38234 * 120.00189 * 270.02172 * 16 15 14 25 25 H 0.96997 * 119.99966 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47594 * 59.99640 * 9 7 2 27 27 H 1.09000 * 109.47279 * 300.00026 * 9 7 2 28 28 H 0.97002 * 120.00097 * 345.00050 * 10 9 7 29 29 H 1.08991 * 109.47359 * 60.00338 * 14 11 10 30 30 H 1.09000 * 109.47025 * 299.99692 * 14 11 10 31 31 H 1.09004 * 109.47390 * 60.00043 * 15 14 11 32 32 H 1.08997 * 109.47467 * 299.99969 * 15 14 11 33 33 H 1.07991 * 120.00287 * 0.02562 * 17 16 15 34 34 H 1.08004 * 120.00214 * 179.97438 * 18 17 16 35 35 H 1.08004 * 119.99939 * 179.72815 * 23 19 18 36 36 H 1.07999 * 119.99990 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 16 1.6881 -5.1423 0.3718 12 8 0.9852 -4.9877 1.5970 13 8 2.8644 -5.9358 0.2970 14 6 0.5438 -5.5724 -0.9686 15 6 -0.0070 -6.9808 -0.7365 16 6 -0.9581 -7.3379 -1.8496 17 6 -0.4852 -7.9609 -2.9894 18 6 -1.3577 -8.2890 -4.0102 19 6 -2.7029 -7.9936 -3.8914 20 7 -3.6371 -8.3444 -4.9848 21 8 -3.2205 -8.8937 -5.9888 22 8 -4.8224 -8.0846 -4.8799 23 6 -3.1748 -7.3653 -2.7541 24 6 -2.3032 -7.0421 -1.7310 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 3.1349 -3.4541 -0.2169 29 1 1.0721 -5.5409 -1.9214 30 1 -0.2800 -4.8588 -0.9860 31 1 -0.5355 -7.0119 0.2164 32 1 0.8164 -7.6947 -0.7187 33 1 0.5656 -8.1920 -3.0821 34 1 -0.9883 -8.7753 -4.9010 35 1 -4.2251 -7.1305 -2.6632 36 1 -2.6726 -6.5554 -0.8404 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487334388.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:25 Heat of formation + Delta-G solvation = -62.670588 kcal Electronic energy + Delta-G solvation = -22848.013683 eV Core-core repulsion = 19041.351171 eV Total energy + Delta-G solvation = -3806.662512 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.081 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.40246 -40.01352 -36.78749 -36.77047 -35.64122 -35.01446 -34.75432 -32.26268 -31.81028 -30.93415 -26.95224 -26.83556 -24.08550 -23.59991 -22.62156 -21.73474 -19.64676 -18.93792 -18.89080 -17.75354 -17.72390 -16.82165 -16.27238 -15.90365 -15.82540 -15.62404 -15.14316 -14.81561 -14.36905 -14.06036 -13.88527 -13.52883 -12.97607 -12.64913 -12.61167 -12.23542 -12.09002 -11.95008 -11.82241 -11.79286 -11.65726 -11.52147 -11.42502 -11.36265 -11.02415 -10.84150 -10.65804 -10.21372 -9.79474 -9.73522 -9.53913 -8.99825 -8.33679 -6.28211 -4.33010 -0.47045 0.56185 0.56382 1.05315 1.15562 2.85229 3.18732 3.21136 3.26361 3.30938 3.95699 3.97354 4.09169 4.14976 4.26511 4.29809 4.46665 4.49688 4.58079 4.84509 4.87455 5.08783 5.10200 5.23193 5.32672 5.36183 5.43004 5.63080 5.82124 5.89104 6.18374 6.27607 7.10791 7.20498 7.40266 7.67712 7.69900 8.06034 8.71249 9.32856 10.82192 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.002968 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.235891 B = 9432.284287 C =10682.209800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.066 0.934 9 C 0.243 3.757 10 N -1.105 6.105 11 S 2.613 3.387 12 O -0.955 6.955 13 O -0.976 6.976 14 C -0.638 4.638 15 C -0.081 4.081 16 C -0.016 4.016 17 C -0.116 4.116 18 C -0.052 4.052 19 C -0.052 4.052 20 N 0.030 4.970 21 O -0.164 6.164 22 O -0.162 6.162 23 C -0.050 4.050 24 C -0.113 4.113 25 H 0.267 0.733 26 H 0.020 0.980 27 H 0.040 0.960 28 H 0.411 0.589 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 -15.865 -5.348 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.084 0.916 9 C 0.119 3.881 10 N -0.866 5.866 11 S 2.703 3.297 12 O -0.945 6.945 13 O -0.966 6.966 14 C -0.764 4.764 15 C -0.119 4.119 16 C -0.017 4.017 17 C -0.135 4.135 18 C -0.071 4.071 19 C -0.135 4.135 20 N 0.549 4.451 21 O -0.379 6.379 22 O -0.378 6.378 23 C -0.069 4.069 24 C -0.132 4.132 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.245 0.755 29 H 0.152 0.848 30 H 0.157 0.843 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.173 0.827 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.681 -16.104 -4.035 16.817 hybrid contribution 0.087 1.221 -1.191 1.708 sum -2.594 -14.884 -5.226 15.986 Atomic orbital electron populations 1.69918 1.06081 1.27514 1.49380 1.24979 0.95004 0.99562 0.94657 0.86395 0.79756 0.82462 0.78234 1.20469 1.20956 1.19663 1.21180 0.93495 0.89873 1.52529 0.91578 1.19113 0.87897 0.83922 0.97137 1.55483 1.19616 1.23802 1.87719 1.04747 0.74998 0.73782 0.76188 1.93598 1.76206 1.85311 1.39429 1.93549 1.45168 1.70187 1.87695 1.30814 1.18731 1.04281 1.22597 1.20472 0.99018 0.94607 0.97823 1.20224 0.94256 0.92361 0.94898 1.21181 1.00738 0.99290 0.92243 1.21059 0.89979 0.95894 1.00131 1.21153 0.90512 1.11152 0.90717 1.43638 1.01671 0.98153 1.01650 1.94533 1.82006 1.41762 1.19623 1.94545 0.99584 1.57312 1.86331 1.21096 1.02356 0.93160 0.90251 1.21244 0.92236 1.00224 0.99477 0.92367 0.96240 0.94226 0.75504 0.84761 0.84255 0.88285 0.88475 0.83184 0.82831 0.82714 0.82946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.48 13.29 55.43 0.74 -23.74 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.20 29.54 -169.99 -5.02 15.17 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.53 -13.63 9.27 -34.44 -0.32 -13.95 16 8 H 0.07 1.63 7.65 -52.49 -0.40 1.23 16 9 C 0.24 5.54 5.88 -5.20 -0.03 5.51 16 10 N -1.10 -20.07 5.88 -11.66 -0.07 -20.14 16 11 S 2.61 39.88 5.46 -107.50 -0.59 39.29 16 12 O -0.96 -18.10 17.50 -57.54 -1.01 -19.10 16 13 O -0.98 -16.31 18.08 -57.54 -1.04 -17.35 16 14 C -0.64 -6.89 6.05 37.16 0.22 -6.67 16 15 C -0.08 -0.70 5.35 -27.89 -0.15 -0.84 16 16 C -0.02 -0.13 5.13 -104.63 -0.54 -0.67 16 17 C -0.12 -0.87 9.70 -39.58 -0.38 -1.26 16 18 C -0.05 -0.44 9.56 -39.58 -0.38 -0.81 16 19 C -0.05 -0.54 6.85 -79.95 -0.55 -1.08 16 20 N 0.03 0.37 4.45 33.96 0.15 0.52 16 21 O -0.16 -2.13 18.45 -29.46 -0.54 -2.67 16 22 O -0.16 -2.13 18.45 -29.46 -0.54 -2.68 16 23 C -0.05 -0.44 9.56 -39.58 -0.38 -0.82 16 24 C -0.11 -0.92 9.70 -39.58 -0.38 -1.31 16 25 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.99 7.70 -51.93 -0.40 0.59 16 28 H 0.41 6.98 8.50 -34.47 -0.29 6.69 16 29 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.14 1.53 8.14 -51.92 -0.42 1.11 16 31 H 0.10 0.75 8.09 -51.93 -0.42 0.34 16 32 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16 33 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.15 1.08 7.61 -52.48 -0.40 0.68 16 35 H 0.16 1.19 7.61 -52.48 -0.40 0.79 16 36 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -33.44 339.02 -9.78 -43.21 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.98 Total: 2.76 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -2.98 Total: -20.39 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.82 Total: -43.36 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -3.13 Total: -41.81 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 39.88 SS G_CDS: -0.59 Total: 39.29 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.44 -9.78 -43.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487334388.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.457 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds