Wall clock time and date at job start Tue Mar 31 2020 11:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00293 * 2 1 4 4 H 1.48502 * 109.46941 * 269.99991 * 3 2 1 5 5 H 1.48504 * 109.47210 * 29.99775 * 3 2 1 6 6 H 1.48495 * 109.47529 * 149.99853 * 3 2 1 7 7 C 1.37884 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99580 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99999 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46973 * 179.97438 * 9 7 2 11 11 S 1.65606 * 120.00212 * 164.99833 * 10 9 7 12 12 O 1.42096 * 104.27590 * 308.93441 * 11 10 9 13 13 O 1.42091 * 104.27893 * 181.06974 * 11 10 9 14 14 C 1.81410 * 104.44573 * 65.00050 * 11 10 9 15 15 C 1.53000 * 109.46769 * 180.02562 * 14 11 10 16 16 C 1.50696 * 109.47110 * 179.97438 * 15 14 11 17 17 C 1.38238 * 119.99764 * 89.99849 * 16 15 14 18 18 C 1.38234 * 119.99693 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00240 * 0.02562 * 18 17 16 20 20 N 1.48026 * 119.99930 * 179.97438 * 19 18 17 21 21 O 1.21793 * 119.99867 * 0.02562 * 20 19 18 22 22 O 1.21799 * 119.99956 * 179.97438 * 20 19 18 23 23 C 1.38233 * 120.00037 * 0.26327 * 19 18 17 24 24 C 1.38234 * 120.00189 * 270.02172 * 16 15 14 25 25 H 0.96997 * 119.99966 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47594 * 59.99640 * 9 7 2 27 27 H 1.09000 * 109.47279 * 300.00026 * 9 7 2 28 28 H 0.97002 * 120.00097 * 345.00050 * 10 9 7 29 29 H 1.08991 * 109.47359 * 60.00338 * 14 11 10 30 30 H 1.09000 * 109.47025 * 299.99692 * 14 11 10 31 31 H 1.09004 * 109.47390 * 60.00043 * 15 14 11 32 32 H 1.08997 * 109.47467 * 299.99969 * 15 14 11 33 33 H 1.07991 * 120.00287 * 0.02562 * 17 16 15 34 34 H 1.08004 * 120.00214 * 179.97438 * 18 17 16 35 35 H 1.08004 * 119.99939 * 179.72815 * 23 19 18 36 36 H 1.07999 * 119.99990 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 16 1.6881 -5.1423 0.3718 12 8 0.9852 -4.9877 1.5970 13 8 2.8644 -5.9358 0.2970 14 6 0.5438 -5.5724 -0.9686 15 6 -0.0070 -6.9808 -0.7365 16 6 -0.9581 -7.3379 -1.8496 17 6 -0.4852 -7.9609 -2.9894 18 6 -1.3577 -8.2890 -4.0102 19 6 -2.7029 -7.9936 -3.8914 20 7 -3.6371 -8.3444 -4.9848 21 8 -3.2205 -8.8937 -5.9888 22 8 -4.8224 -8.0846 -4.8799 23 6 -3.1748 -7.3653 -2.7541 24 6 -2.3032 -7.0421 -1.7310 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 3.1349 -3.4541 -0.2169 29 1 1.0721 -5.5409 -1.9214 30 1 -0.2800 -4.8588 -0.9860 31 1 -0.5355 -7.0119 0.2164 32 1 0.8164 -7.6947 -0.7187 33 1 0.5656 -8.1920 -3.0821 34 1 -0.9883 -8.7753 -4.9010 35 1 -4.2251 -7.1305 -2.6632 36 1 -2.6726 -6.5554 -0.8404 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487334388.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:24 Heat of formation + Delta-G solvation = -85.427894 kcal Electronic energy + Delta-G solvation = -22849.000514 eV Core-core repulsion = 19041.351171 eV Total energy + Delta-G solvation = -3807.649343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.081 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.28776 -40.68546 -38.10435 -37.72478 -36.97948 -36.43252 -35.77604 -34.11364 -32.43281 -31.73583 -28.70666 -27.79807 -24.91293 -24.46314 -24.22503 -22.47718 -20.42561 -20.26387 -19.79791 -19.21839 -18.64873 -18.10549 -17.39448 -17.26783 -16.81305 -16.66461 -16.37141 -15.76168 -15.38632 -14.99606 -14.71873 -14.62686 -14.45995 -14.06981 -13.57510 -13.55356 -13.39967 -13.16714 -13.02833 -12.80091 -12.76831 -12.72029 -12.52941 -12.35354 -12.35063 -12.19615 -12.08439 -11.73745 -11.40757 -10.83511 -10.44967 -10.40778 -10.02138 -8.26561 -6.37186 -1.30875 -0.64020 -0.04345 0.23109 0.34968 1.43558 1.45159 1.55191 1.89799 2.21194 2.40724 2.86263 3.09118 3.30216 3.36970 3.39896 3.50468 3.63494 3.72108 3.93841 3.99677 4.28987 4.42381 4.49092 4.61051 4.68676 4.76259 4.78405 4.84190 5.13197 5.19215 5.28600 5.33615 5.45971 5.74355 6.01072 6.33174 6.43247 6.77751 7.32703 8.84116 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.002968 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.235891 B = 9432.284287 C =10682.209800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.550 4.550 8 H 0.070 0.930 9 C 0.253 3.747 10 N -1.112 6.112 11 S 2.621 3.379 12 O -0.999 6.999 13 O -0.989 6.989 14 C -0.610 4.610 15 C -0.088 4.088 16 C -0.016 4.016 17 C -0.108 4.108 18 C -0.052 4.052 19 C -0.069 4.069 20 N 0.031 4.969 21 O -0.177 6.177 22 O -0.189 6.189 23 C -0.056 4.056 24 C -0.115 4.115 25 H 0.268 0.732 26 H 0.022 0.978 27 H 0.011 0.989 28 H 0.415 0.585 29 H 0.161 0.839 30 H 0.142 0.858 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.180 0.820 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 -16.347 -5.887 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.590 4.590 8 H 0.088 0.912 9 C 0.128 3.872 10 N -0.871 5.871 11 S 2.717 3.283 12 O -0.990 6.990 13 O -0.980 6.980 14 C -0.742 4.742 15 C -0.126 4.126 16 C -0.017 4.017 17 C -0.127 4.127 18 C -0.071 4.071 19 C -0.153 4.153 20 N 0.545 4.455 21 O -0.391 6.391 22 O -0.400 6.400 23 C -0.075 4.075 24 C -0.133 4.133 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.029 0.971 28 H 0.249 0.751 29 H 0.179 0.821 30 H 0.161 0.839 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.197 0.803 34 H 0.184 0.816 35 H 0.178 0.822 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.502 -16.573 -4.541 17.249 hybrid contribution -0.246 1.261 -1.016 1.638 sum -1.748 -15.312 -5.557 16.383 Atomic orbital electron populations 1.70019 1.07447 1.28345 1.50531 1.25821 0.95807 1.03004 0.94411 0.85411 0.78511 0.78366 0.78518 1.19563 1.20979 1.19138 1.21647 0.94070 0.91335 1.51914 0.91171 1.18708 0.88139 0.84570 0.95773 1.55355 1.19433 1.24099 1.88233 1.04367 0.75035 0.72509 0.76415 1.93544 1.76719 1.85524 1.43168 1.93530 1.46617 1.69609 1.88200 1.30505 1.17162 1.06016 1.20520 1.20643 1.00105 0.93313 0.98554 1.20251 0.94074 0.92468 0.94932 1.21511 1.01937 0.98018 0.91189 1.21310 0.89234 0.95608 1.00995 1.21400 0.90842 1.12608 0.90413 1.43983 1.01837 0.97660 1.02016 1.94507 1.81950 1.42147 1.20521 1.94531 1.00526 1.58239 1.86709 1.21249 1.02991 0.93101 0.90116 1.21482 0.92318 0.99864 0.99665 0.92291 0.96005 0.97064 0.75117 0.82081 0.83949 0.87318 0.86164 0.80271 0.81562 0.82196 0.81409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.01 13.29 21.45 0.28 -50.73 16 2 C 0.01 0.51 5.46 84.66 0.46 0.97 16 3 Si 0.97 41.03 29.54 68.60 2.03 43.06 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 7 C -0.55 -28.17 9.27 25.60 0.24 -27.94 16 8 H 0.07 3.43 7.65 -2.91 -0.02 3.41 16 9 C 0.25 11.59 5.88 85.63 0.50 12.09 16 10 N -1.11 -39.74 5.88 -190.81 -1.12 -40.87 16 11 S 2.62 76.62 5.46 -56.49 -0.31 76.31 16 12 O -1.00 -37.75 17.50 -127.65 -2.23 -39.98 16 13 O -0.99 -31.34 18.08 -127.65 -2.31 -33.65 16 14 C -0.61 -11.28 6.05 71.98 0.44 -10.85 16 15 C -0.09 -1.18 5.35 29.85 0.16 -1.02 16 16 C -0.02 -0.20 5.13 -19.87 -0.10 -0.31 16 17 C -0.11 -1.21 9.70 22.27 0.22 -1.00 16 18 C -0.05 -0.76 9.56 22.27 0.21 -0.54 16 19 C -0.07 -1.33 6.85 36.37 0.25 -1.08 16 20 N 0.03 0.76 4.45 -46.46 -0.21 0.56 16 21 O -0.18 -4.54 18.45 18.89 0.35 -4.19 16 22 O -0.19 -5.06 18.45 18.89 0.35 -4.71 16 23 C -0.06 -0.91 9.56 22.27 0.21 -0.70 16 24 C -0.11 -1.59 9.70 22.27 0.22 -1.37 16 25 H 0.27 13.98 8.31 -92.71 -0.77 13.20 16 26 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.01 0.58 7.70 -2.39 -0.02 0.56 16 28 H 0.41 13.84 8.50 -96.74 -0.82 13.01 16 29 H 0.16 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.11 1.31 8.09 -2.38 -0.02 1.29 16 32 H 0.12 1.13 8.09 -2.39 -0.02 1.11 16 33 H 0.18 0.95 8.06 -2.92 -0.02 0.93 16 34 H 0.17 1.92 7.61 -2.91 -0.02 1.90 16 35 H 0.16 2.36 7.61 -2.91 -0.02 2.34 16 36 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -72.37 339.02 -0.07 -72.44 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.30 Total: 13.51 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 2.80 Total: -31.75 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -1.04 Total: -91.04 kcal Atomic # 8 Polarization: -78.69 SS G_CDS: -3.84 Total: -82.53 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Atomic # 16 Polarization: 76.62 SS G_CDS: -0.31 Total: 76.31 kcal Total: -72.37 -0.07 -72.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487334388.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.992 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds