Wall clock time and date at job start Tue Mar 31 2020 10:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46963 * 125.26866 * 3 2 1 5 5 C 1.36858 * 119.99583 * 262.18234 * 4 3 2 6 6 H 1.08000 * 119.99738 * 200.76121 * 5 4 3 7 7 C 1.39016 * 120.00391 * 20.75174 * 5 4 3 8 8 N 1.31390 * 119.99699 * 16.60805 * 7 5 4 9 9 Si 1.86793 * 120.00487 * 196.60566 * 7 5 4 10 10 H 1.48498 * 109.47095 * 60.00251 * 9 7 5 11 11 H 1.48504 * 109.47395 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47304 * 300.00427 * 9 7 5 13 13 C 1.34772 * 120.00384 * 82.17677 * 4 3 2 14 14 O 1.21760 * 119.99974 * 181.92215 * 13 4 3 15 15 C 1.46442 * 120.00171 * 1.93266 * 13 4 3 16 16 C 1.37025 * 126.12998 * 172.50480 * 15 13 4 17 17 N 1.30607 * 114.01301 * 179.70151 * 16 15 13 18 18 C 1.30364 * 117.31253 * 0.51686 * 17 16 15 19 19 C 1.47764 * 124.74386 * 179.76442 * 18 17 16 20 20 C 1.40038 * 120.56126 * 359.69486 * 19 18 17 21 21 C 1.38349 * 118.29068 * 180.02562 * 20 19 18 22 22 C 1.38358 * 119.30636 * 0.02562 * 21 20 19 23 23 N 1.31924 * 121.08625 * 0.02562 * 22 21 20 24 24 C 1.31694 * 121.88219 * 359.66014 * 23 22 21 25 25 S 1.70929 * 110.51566 * 359.50006 * 18 17 16 26 26 H 1.08992 * 109.47215 * 5.26147 * 3 2 1 27 27 H 1.09005 * 109.47159 * 245.26115 * 3 2 1 28 28 H 0.96997 * 120.00303 * 179.97438 * 8 7 5 29 29 H 1.08001 * 122.99739 * 359.97238 * 16 15 13 30 30 H 1.08004 * 120.85671 * 0.02562 * 20 19 18 31 31 H 1.07998 * 120.34430 * 180.02562 * 21 20 19 32 32 H 1.08000 * 119.45652 * 180.02562 * 22 21 20 33 33 H 1.08003 * 119.71967 * 180.33090 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.7984 -1.1277 5 6 3.4763 0.1813 -2.2885 6 1 4.1321 0.6891 -2.9802 7 6 3.0187 -1.0992 -2.5773 8 7 1.9870 -1.5900 -1.9284 9 14 3.8704 -2.1222 -3.8878 10 1 5.2920 -2.3260 -3.5103 11 1 3.1949 -3.4395 -4.0042 12 1 3.8010 -1.4140 -5.1912 13 6 3.1702 2.1399 -1.0221 14 8 3.5425 2.8057 -1.9711 15 6 2.8033 2.7969 0.2342 16 6 2.9659 4.1252 0.5288 17 7 2.5500 4.4601 1.7207 18 6 2.0541 3.5146 2.4688 19 6 1.5416 3.7080 3.8411 20 6 1.5686 4.9739 4.4394 21 6 1.0772 5.1014 5.7264 22 6 0.5800 3.9851 6.3752 23 7 0.5681 2.8043 5.7871 24 6 1.0188 2.6331 4.5616 25 16 2.0729 2.0211 1.6375 26 1 2.9718 -1.0224 -0.0942 27 1 2.9712 0.4309 0.9334 28 1 1.6674 -2.4834 -2.1300 29 1 3.3956 4.8332 -0.1645 30 1 1.9629 5.8286 3.9098 31 1 1.0816 6.0623 6.2193 32 1 0.1954 4.0820 7.3798 33 1 0.9875 1.6517 4.1118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535587786.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:59 Heat of formation + Delta-G solvation = 97.158738 kcal Electronic energy + Delta-G solvation = -22374.177959 eV Core-core repulsion = 18914.047837 eV Total energy + Delta-G solvation = -3460.130122 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.058 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.31040 -39.45279 -38.62336 -36.00115 -34.62222 -33.15615 -32.28933 -31.98106 -29.44361 -27.89039 -26.34240 -24.90795 -23.79290 -22.93174 -21.25674 -18.98418 -18.37941 -18.18478 -17.16951 -16.82563 -16.50159 -15.87670 -15.63687 -15.02995 -14.71528 -14.55484 -14.10154 -13.94114 -13.74698 -13.52976 -13.34339 -13.19434 -12.76336 -12.25243 -12.14695 -11.90903 -11.60059 -11.40391 -11.21232 -10.94185 -10.75231 -10.61291 -10.25342 -9.72488 -9.68845 -9.60069 -9.41146 -9.04399 -8.95368 -8.40088 -8.14234 -6.82575 -4.27575 0.04953 1.05282 1.30438 1.43596 1.86244 2.84629 3.04112 3.06147 3.08753 3.36859 3.64522 3.74425 3.88067 3.91024 3.97779 4.33047 4.49503 4.61586 4.68638 4.76594 4.83379 4.87778 5.07887 5.35721 5.42808 5.48252 5.64548 5.70552 5.93436 6.02407 6.18660 6.39334 6.47229 7.14931 7.54074 7.73743 7.88612 7.95617 8.45896 8.66121 8.80651 9.39285 10.21784 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.026132 B = 0.003871 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.219872 B = 7230.854134 C = 8040.574711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.235 3.765 3 C 0.209 3.791 4 N -0.419 5.419 5 C -0.299 4.299 6 H 0.117 0.883 7 C 0.032 3.968 8 N -0.865 5.865 9 Si 0.940 3.060 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.269 1.269 13 C 0.511 3.489 14 O -0.560 6.560 15 C -0.246 4.246 16 C 0.085 3.915 17 N -0.464 5.464 18 C 0.014 3.986 19 C -0.061 4.061 20 C -0.038 4.038 21 C -0.173 4.173 22 C 0.099 3.901 23 N -0.478 5.478 24 C 0.116 3.884 25 S 0.202 5.798 26 H 0.148 0.852 27 H 0.085 0.915 28 H 0.282 0.718 29 H 0.187 0.813 30 H 0.146 0.854 31 H 0.139 0.861 32 H 0.158 0.842 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.592 5.023 13.425 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.084 4.084 3 C 0.079 3.921 4 N -0.137 5.137 5 C -0.427 4.427 6 H 0.135 0.865 7 C -0.174 4.174 8 N -0.502 5.502 9 Si 0.765 3.235 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.193 1.193 13 C 0.300 3.700 14 O -0.444 6.444 15 C -0.371 4.371 16 C -0.074 4.074 17 N -0.178 5.178 18 C -0.255 4.255 19 C -0.066 4.066 20 C -0.067 4.067 21 C -0.193 4.193 22 C -0.059 4.059 23 N -0.186 5.186 24 C -0.044 4.044 25 S 0.463 5.537 26 H 0.165 0.835 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.204 0.796 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.175 0.825 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.648 3.945 13.874 14.439 hybrid contribution 1.292 0.764 -1.718 2.281 sum 0.645 4.709 12.156 13.052 Atomic orbital electron populations 1.80931 1.12949 1.09364 1.09156 1.28823 0.95074 0.92363 0.92185 1.19040 0.82649 1.01582 0.88790 1.43576 1.53960 1.03553 1.12632 1.19896 1.26767 0.98150 0.97864 0.86523 1.25517 0.94875 0.98039 0.98966 1.69773 1.20219 1.18514 1.41704 0.85749 0.79294 0.78255 0.80202 1.19205 1.20565 1.19344 1.16545 0.85753 0.81972 0.85685 1.90720 1.52574 1.62865 1.38214 1.26631 1.11414 0.99082 0.99940 1.22179 0.99620 0.93327 0.92236 1.66262 1.12295 1.34293 1.04929 1.25346 1.05291 0.96213 0.98698 1.18960 1.01168 0.95540 0.90981 1.21768 0.94004 0.96888 0.93991 1.22139 1.00801 1.00715 0.95615 1.22892 0.95272 0.87817 0.99882 1.67681 1.15338 1.25609 1.09988 1.22860 0.93327 0.98103 0.90086 1.84376 1.54291 1.08981 1.06048 0.83486 0.89904 0.90698 0.79632 0.83646 0.84303 0.82466 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -10.02 18.54 42.15 0.78 -9.24 16 2 C 0.24 4.96 11.10 -20.76 -0.23 4.73 16 3 C 0.21 4.03 4.73 -6.83 -0.03 4.00 16 4 N -0.42 -9.52 2.60 -119.51 -0.31 -9.83 16 5 C -0.30 -7.20 9.28 -15.02 -0.14 -7.34 16 6 H 0.12 2.91 7.42 -52.49 -0.39 2.52 16 7 C 0.03 0.73 4.96 -17.45 -0.09 0.64 16 8 N -0.86 -20.12 9.40 55.50 0.52 -19.60 16 9 Si 0.94 18.07 29.58 -169.99 -5.03 13.04 16 10 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 11 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 12 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 13 C 0.51 11.74 7.50 -12.96 -0.10 11.64 16 14 O -0.56 -14.48 16.57 5.13 0.09 -14.39 16 15 C -0.25 -4.75 6.26 -36.72 -0.23 -4.98 16 16 C 0.09 1.53 11.17 -18.51 -0.21 1.32 16 17 N -0.46 -7.84 10.11 -11.98 -0.12 -7.96 16 18 C 0.01 0.22 7.14 -14.28 -0.10 0.12 16 19 C -0.06 -0.84 5.89 -104.83 -0.62 -1.46 16 20 C -0.04 -0.44 9.80 -38.87 -0.38 -0.82 16 21 C -0.17 -1.59 10.10 -39.50 -0.40 -1.99 16 22 C 0.10 0.97 11.17 -17.47 -0.20 0.78 16 23 N -0.48 -6.02 10.35 -12.90 -0.13 -6.15 16 24 C 0.12 1.52 10.74 -17.12 -0.18 1.34 16 25 S 0.20 3.27 15.27 -107.50 -1.64 1.63 16 26 H 0.15 2.79 6.39 -51.93 -0.33 2.46 16 27 H 0.08 1.35 4.53 -22.91 -0.10 1.25 16 28 H 0.28 6.31 8.31 -40.82 -0.34 5.97 16 29 H 0.19 3.10 8.06 -52.49 -0.42 2.67 16 30 H 0.15 1.62 7.87 -52.48 -0.41 1.20 16 31 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.16 1.88 7.24 -52.48 -0.38 1.50 16 LS Contribution 309.49 15.07 4.66 4.66 Total: -1.00 -29.62 309.49 -6.10 -35.72 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -2.02 Total: 4.13 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -2.90 Total: 7.98 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.74 Total: -52.78 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.09 Total: -14.39 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.64 Total: 1.63 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.62 -6.10 -35.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535587786.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.881 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds