Wall clock time and date at job start Tue Mar 31 2020 10:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46963 * 125.26866 * 3 2 1 5 5 C 1.36858 * 119.99583 * 262.18234 * 4 3 2 6 6 H 1.08000 * 119.99738 * 200.76121 * 5 4 3 7 7 C 1.39016 * 120.00391 * 20.75174 * 5 4 3 8 8 N 1.31390 * 119.99699 * 16.60805 * 7 5 4 9 9 Si 1.86793 * 120.00487 * 196.60566 * 7 5 4 10 10 H 1.48498 * 109.47095 * 60.00251 * 9 7 5 11 11 H 1.48504 * 109.47395 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47304 * 300.00427 * 9 7 5 13 13 C 1.34772 * 120.00384 * 82.17677 * 4 3 2 14 14 O 1.21760 * 119.99974 * 181.92215 * 13 4 3 15 15 C 1.46442 * 120.00171 * 1.93266 * 13 4 3 16 16 C 1.37025 * 126.12998 * 172.50480 * 15 13 4 17 17 N 1.30607 * 114.01301 * 179.70151 * 16 15 13 18 18 C 1.30364 * 117.31253 * 0.51686 * 17 16 15 19 19 C 1.47764 * 124.74386 * 179.76442 * 18 17 16 20 20 C 1.40038 * 120.56126 * 359.69486 * 19 18 17 21 21 C 1.38349 * 118.29068 * 180.02562 * 20 19 18 22 22 C 1.38358 * 119.30636 * 0.02562 * 21 20 19 23 23 N 1.31924 * 121.08625 * 0.02562 * 22 21 20 24 24 C 1.31694 * 121.88219 * 359.66014 * 23 22 21 25 25 S 1.70929 * 110.51566 * 359.50006 * 18 17 16 26 26 H 1.08992 * 109.47215 * 5.26147 * 3 2 1 27 27 H 1.09005 * 109.47159 * 245.26115 * 3 2 1 28 28 H 0.96997 * 120.00303 * 179.97438 * 8 7 5 29 29 H 1.08001 * 122.99739 * 359.97238 * 16 15 13 30 30 H 1.08004 * 120.85671 * 0.02562 * 20 19 18 31 31 H 1.07998 * 120.34430 * 180.02562 * 21 20 19 32 32 H 1.08000 * 119.45652 * 180.02562 * 22 21 20 33 33 H 1.08003 * 119.71967 * 180.33090 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.7984 -1.1277 5 6 3.4763 0.1813 -2.2885 6 1 4.1321 0.6891 -2.9802 7 6 3.0187 -1.0992 -2.5773 8 7 1.9870 -1.5900 -1.9284 9 14 3.8704 -2.1222 -3.8878 10 1 5.2920 -2.3260 -3.5103 11 1 3.1949 -3.4395 -4.0042 12 1 3.8010 -1.4140 -5.1912 13 6 3.1702 2.1399 -1.0221 14 8 3.5425 2.8057 -1.9711 15 6 2.8033 2.7969 0.2342 16 6 2.9659 4.1252 0.5288 17 7 2.5500 4.4601 1.7207 18 6 2.0541 3.5146 2.4688 19 6 1.5416 3.7080 3.8411 20 6 1.5686 4.9739 4.4394 21 6 1.0772 5.1014 5.7264 22 6 0.5800 3.9851 6.3752 23 7 0.5681 2.8043 5.7871 24 6 1.0188 2.6331 4.5616 25 16 2.0729 2.0211 1.6375 26 1 2.9718 -1.0224 -0.0942 27 1 2.9712 0.4309 0.9334 28 1 1.6674 -2.4834 -2.1300 29 1 3.3956 4.8332 -0.1645 30 1 1.9629 5.8286 3.9098 31 1 1.0816 6.0623 6.2193 32 1 0.1954 4.0820 7.3798 33 1 0.9875 1.6517 4.1118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535587786.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:59 Heat of formation + Delta-G solvation = 78.366569 kcal Electronic energy + Delta-G solvation = -22374.992849 eV Core-core repulsion = 18914.047837 eV Total energy + Delta-G solvation = -3460.945012 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.058 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35591 -40.95941 -40.07795 -37.75769 -36.37312 -34.30448 -33.88935 -32.93063 -30.83707 -29.52717 -27.73744 -26.41932 -24.78735 -24.00835 -22.76992 -20.32558 -19.98401 -19.75454 -18.47528 -18.12056 -17.79775 -17.20522 -16.88139 -16.47456 -16.07413 -15.88674 -15.66783 -15.39006 -15.17700 -14.70276 -14.64859 -14.33424 -14.08659 -13.93472 -13.60319 -13.32876 -13.08306 -13.00467 -12.65829 -12.51981 -12.46136 -12.13018 -11.37290 -11.27918 -10.95079 -10.69309 -10.59828 -10.58111 -10.41646 -10.10358 -9.43219 -8.54522 -6.11856 -1.18443 0.04163 0.13002 0.26054 0.47663 1.36806 1.47467 1.56635 1.57013 1.72454 2.02651 2.22981 2.27448 2.74253 2.80563 2.86529 2.92647 3.23678 3.45601 3.71807 3.75824 3.88585 3.97698 4.12686 4.15434 4.23709 4.50414 4.62779 4.67892 4.97670 5.13554 5.15283 5.35397 5.61484 5.81725 6.19499 6.49803 6.76676 6.85949 6.89418 7.07370 7.64146 8.48922 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.026132 B = 0.003871 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.219872 B = 7230.854134 C = 8040.574711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.246 3.754 3 C 0.213 3.787 4 N -0.432 5.432 5 C -0.338 4.338 6 H 0.096 0.904 7 C 0.009 3.991 8 N -0.885 5.885 9 Si 0.999 3.001 10 H -0.256 1.256 11 H -0.274 1.274 12 H -0.280 1.280 13 C 0.510 3.490 14 O -0.601 6.601 15 C -0.292 4.292 16 C 0.105 3.895 17 N -0.477 5.477 18 C 0.044 3.956 19 C -0.095 4.095 20 C -0.038 4.038 21 C -0.159 4.159 22 C 0.108 3.892 23 N -0.501 5.501 24 C 0.114 3.886 25 S 0.230 5.770 26 H 0.151 0.849 27 H 0.115 0.885 28 H 0.284 0.716 29 H 0.193 0.807 30 H 0.150 0.850 31 H 0.180 0.820 32 H 0.196 0.804 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 5.868 16.551 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.073 4.073 3 C 0.084 3.916 4 N -0.150 5.150 5 C -0.465 4.465 6 H 0.113 0.887 7 C -0.195 4.195 8 N -0.523 5.523 9 Si 0.822 3.178 10 H -0.180 1.180 11 H -0.199 1.199 12 H -0.205 1.205 13 C 0.300 3.700 14 O -0.488 6.488 15 C -0.416 4.416 16 C -0.055 4.055 17 N -0.191 5.191 18 C -0.226 4.226 19 C -0.101 4.101 20 C -0.067 4.067 21 C -0.178 4.178 22 C -0.049 4.049 23 N -0.209 5.209 24 C -0.046 4.046 25 S 0.493 5.507 26 H 0.169 0.831 27 H 0.131 0.869 28 H 0.094 0.906 29 H 0.210 0.790 30 H 0.168 0.832 31 H 0.197 0.803 32 H 0.213 0.787 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.066 4.758 17.014 17.699 hybrid contribution 1.303 0.767 -2.306 2.757 sum 0.237 5.525 14.708 15.713 Atomic orbital electron populations 1.80918 1.13751 1.10429 1.10129 1.29143 0.95394 0.91440 0.91301 1.19222 0.81548 1.01695 0.89136 1.43642 1.54413 1.03736 1.13185 1.19818 1.28371 0.99174 0.99122 0.88671 1.26139 0.94907 0.98087 1.00366 1.69836 1.20874 1.18759 1.42795 0.84885 0.78949 0.76678 0.77294 1.18018 1.19915 1.20510 1.16997 0.84510 0.82057 0.86401 1.90661 1.54114 1.63899 1.40167 1.26235 1.14956 0.99925 1.00497 1.22391 0.97663 0.92927 0.92482 1.66383 1.13792 1.34304 1.04666 1.25878 1.01888 0.95579 0.99214 1.19020 1.03782 0.97107 0.90145 1.21995 0.93618 0.96024 0.95089 1.22548 0.98665 1.02315 0.94301 1.23632 0.93220 0.86959 1.01081 1.67753 1.16102 1.27290 1.09736 1.22907 0.93147 0.98044 0.90495 1.84109 1.53575 1.08863 1.04191 0.83127 0.86915 0.90578 0.79019 0.83223 0.80289 0.78728 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -21.43 18.54 20.01 0.37 -21.06 16 2 C 0.25 10.48 11.10 89.44 0.99 11.48 16 3 C 0.21 8.32 4.73 84.57 0.40 8.72 16 4 N -0.43 -20.33 2.60 -650.21 -1.69 -22.02 16 5 C -0.34 -16.98 9.28 84.10 0.78 -16.20 16 6 H 0.10 5.06 7.42 -2.91 -0.02 5.04 16 7 C 0.01 0.42 4.96 84.95 0.42 0.84 16 8 N -0.89 -41.75 9.40 21.68 0.20 -41.54 16 9 Si 1.00 37.60 29.58 68.60 2.03 39.63 16 10 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 11 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 12 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 13 C 0.51 24.35 7.50 86.38 0.65 24.99 16 14 O -0.60 -32.69 16.57 -4.54 -0.08 -32.77 16 15 C -0.29 -11.44 6.26 24.12 0.15 -11.29 16 16 C 0.11 3.75 11.17 84.59 0.94 4.70 16 17 N -0.48 -15.57 10.11 -191.82 -1.94 -17.51 16 18 C 0.04 1.34 7.14 87.43 0.62 1.97 16 19 C -0.09 -2.39 5.89 -20.00 -0.12 -2.50 16 20 C -0.04 -0.77 9.80 22.73 0.22 -0.54 16 21 C -0.16 -2.15 10.10 22.32 0.23 -1.92 16 22 C 0.11 1.63 11.17 84.71 0.95 2.57 16 23 N -0.50 -11.03 10.35 -194.71 -2.01 -13.05 16 24 C 0.11 2.73 10.74 85.03 0.91 3.64 16 25 S 0.23 7.32 15.27 -56.49 -0.86 6.45 16 26 H 0.15 5.79 6.39 -2.39 -0.02 5.78 16 27 H 0.11 3.66 4.53 -20.84 -0.09 3.57 16 28 H 0.28 12.75 8.31 -92.71 -0.77 11.98 16 29 H 0.19 6.46 8.06 -2.91 -0.02 6.44 16 30 H 0.15 2.86 7.87 -2.91 -0.02 2.84 16 31 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 32 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.16 3.55 7.24 -2.91 -0.02 3.53 16 Total: -1.00 -66.02 309.49 4.28 -61.74 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.11 Total: 13.68 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: 7.15 Total: 26.45 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -5.07 Total: -115.19 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.08 Total: -32.77 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Atomic # 16 Polarization: 7.32 SS G_CDS: -0.86 Total: 6.45 kcal Total: -66.02 4.28 -61.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535587786.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.108 kcal (2) G-P(sol) polarization free energy of solvation -66.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds