Wall clock time and date at job start Tue Mar 31 2020 10:31:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.46506 * 120.00025 * 2 1
4 4 C 1.50696 * 109.47169 * 270.00276 * 3 2 1
5 5 H 1.08000 * 120.00288 * 359.97438 * 4 3 2
6 6 C 1.37871 * 119.99937 * 179.97438 * 4 3 2
7 7 N 1.31515 * 119.99965 * 180.02562 * 6 4 3
8 8 Si 1.86803 * 120.00294 * 0.02562 * 6 4 3
9 9 H 1.48499 * 109.47191 * 89.99869 * 8 6 4
10 10 H 1.48494 * 109.47034 * 210.00231 * 8 6 4
11 11 H 1.48500 * 109.46508 * 329.99821 * 8 6 4
12 12 C 1.34774 * 120.00238 * 180.02562 * 2 1 3
13 13 O 1.21597 * 120.00322 * 184.41576 * 12 2 1
14 14 C 1.47540 * 120.00108 * 4.40941 * 12 2 1
15 15 C 1.39714 * 120.18606 * 310.87462 * 14 12 2
16 16 C 1.37887 * 119.89169 * 180.27238 * 15 14 12
17 17 Cl 1.73606 * 119.86058 * 179.76320 * 16 15 14
18 18 C 1.38642 * 120.27672 * 359.74122 * 16 15 14
19 19 C 1.38048 * 120.37777 * 0.02562 * 18 16 15
20 20 N 1.48022 * 119.95192 * 180.02562 * 19 18 16
21 21 O 1.21801 * 119.99960 * 359.97438 * 20 19 18
22 22 O 1.21801 * 119.99998 * 179.97438 * 20 19 18
23 23 C 1.38699 * 120.10075 * 359.97438 * 19 18 16
24 24 O 1.35673 * 120.14109 * 179.97438 * 23 19 18
25 25 H 1.09003 * 109.46708 * 273.01786 * 1 2 3
26 26 H 1.08995 * 109.47463 * 33.01336 * 1 2 3
27 27 H 1.08999 * 109.47387 * 153.02006 * 1 2 3
28 28 H 1.09002 * 109.46672 * 30.00327 * 3 2 1
29 29 H 1.08999 * 109.47152 * 150.00133 * 3 2 1
30 30 H 0.97005 * 120.00271 * 180.02562 * 7 6 4
31 31 H 1.08001 * 120.05040 * 0.03718 * 15 14 12
32 32 H 1.08001 * 119.81054 * 180.02562 * 18 16 15
33 33 H 0.96700 * 114.00004 * 90.00224 * 24 23 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4486 1.7038 -1.4208
5 1 2.0980 1.0959 -2.2417
6 6 3.1259 2.8780 -1.6727
7 7 3.3446 3.2580 -2.9126
8 14 3.7329 3.9293 -0.2529
9 1 5.1065 3.5082 0.1229
10 1 3.7476 5.3560 -0.6643
11 1 2.8270 3.7592 0.9114
12 6 2.1389 -1.1671 -0.0005
13 8 3.3521 -1.1688 0.0806
14 6 1.4045 -2.4430 -0.0993
15 6 0.3106 -2.6903 0.7339
16 6 -0.3678 -3.8870 0.6403
17 17 -1.7232 -4.1959 1.6802
18 6 0.0276 -4.8445 -0.2812
19 6 1.1038 -4.6100 -1.1134
20 7 1.5175 -5.6386 -2.0941
21 8 0.9087 -6.6911 -2.1663
22 8 2.4667 -5.4325 -2.8291
23 6 1.7975 -3.4117 -1.0325
24 8 2.8557 -3.1806 -1.8496
25 1 -0.3633 0.0541 1.0263
26 1 -0.3634 0.8617 -0.5599
27 1 -0.3634 -0.9158 -0.4662
28 1 1.6084 2.0284 0.5139
29 1 3.1499 1.1384 0.5138
30 1 3.8214 4.0839 -3.0899
31 1 -0.0007 -1.9468 1.4527
32 1 -0.5095 -5.7790 -0.3484
33 1 2.6208 -2.7595 -2.6878
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000563181212.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:31:04
Heat of formation + Delta-G solvation = -41.371721 kcal
Electronic energy + Delta-G solvation = -23810.654864 eV
Core-core repulsion = 19867.039139 eV
Total energy + Delta-G solvation = -3943.615725 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 314.055 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-42.41655 -40.75503 -38.70587 -37.86191 -36.80142 -36.40891 -35.25169 -33.04936
-32.28082 -30.64387 -28.66340 -26.90382 -26.35669 -24.51493 -22.91019 -22.32265
-20.27259 -19.03005 -18.70772 -18.53227 -17.70960 -17.15007 -16.86040 -16.63366
-16.48780 -15.68303 -15.37083 -14.63224 -14.31707 -13.85502 -13.64551 -13.60391
-13.04104 -12.63890 -12.53184 -12.23161 -11.92068 -11.85902 -11.68936 -11.67589
-11.59325 -11.23005 -11.13969 -10.99407 -10.67093 -10.34307 -10.04055 -9.73286
-9.51709 -9.30161 -8.72387 -8.03509 -6.22462 -4.23551 -0.53793 0.10413
0.94513 0.98135 1.48087 2.40078 2.96120 3.19811 3.25288 3.27871
3.35239 3.42781 4.03531 4.10230 4.17738 4.27457 4.45704 4.72121
4.90382 5.10546 5.16102 5.24425 5.26496 5.46313 5.52425 5.89836
6.15033 6.45030 6.72506 6.98424 7.18839 7.42438 7.48929 7.82642
8.26903 8.51804 8.77806 9.36240 10.90400
Molecular weight = 314.05amu
Principal moments of inertia in cm(-1)
A = 0.016088 B = 0.004273 C = 0.003567
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1740.001027 B = 6550.746551 C = 7848.560008
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.072 3.928
2 N -0.585 5.585
3 C 0.216 3.784
4 C -0.537 4.537
5 H 0.074 0.926
6 C 0.076 3.924
7 N -0.893 5.893
8 Si 0.876 3.124
9 H -0.272 1.272
10 H -0.283 1.283
11 H -0.266 1.266
12 C 0.552 3.448
13 O -0.503 6.503
14 C -0.131 4.131
15 C -0.018 4.018
16 C -0.057 4.057
17 Cl -0.034 7.034
18 C -0.022 4.022
19 C -0.074 4.074
20 N 0.034 4.966
21 O -0.169 6.169
22 O -0.126 6.126
23 C 0.236 3.764
24 O -0.451 6.451
25 H 0.053 0.947
26 H 0.083 0.917
27 H 0.060 0.940
28 H 0.036 0.964
29 H 0.041 0.959
30 H 0.267 0.733
31 H 0.163 0.837
32 H 0.169 0.831
33 H 0.414 0.586
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.170 -13.393 7.840 19.722
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 N -0.317 5.317
3 C 0.096 3.904
4 C -0.575 4.575
5 H 0.093 0.907
6 C -0.127 4.127
7 N -0.530 5.530
8 Si 0.703 3.297
9 H -0.197 1.197
10 H -0.209 1.209
11 H -0.190 1.190
12 C 0.336 3.664
13 O -0.378 6.378
14 C -0.136 4.136
15 C -0.038 4.038
16 C -0.085 4.085
17 Cl -0.005 7.005
18 C -0.042 4.042
19 C -0.158 4.158
20 N 0.555 4.445
21 O -0.380 6.380
22 O -0.348 6.348
23 C 0.186 3.814
24 O -0.265 6.265
25 H 0.071 0.929
26 H 0.102 0.898
27 H 0.078 0.922
28 H 0.054 0.946
29 H 0.059 0.941
30 H 0.077 0.923
31 H 0.181 0.819
32 H 0.186 0.814
33 H 0.277 0.723
Dipole moment (debyes) X Y Z Total
from point charges -11.449 -12.989 8.767 19.408
hybrid contribution -0.033 0.531 0.015 0.532
sum -11.482 -12.459 8.782 19.084
Atomic orbital electron populations
1.21938 0.80772 1.03337 1.01069 1.47809 1.06422 1.06737 1.70733
1.19793 0.92631 0.79152 0.98850 1.21232 1.37865 1.07541 0.90888
0.90741 1.24834 0.94997 0.97260 0.95650 1.69880 1.40898 1.23556
1.18690 0.86856 0.80252 0.79889 0.82742 1.19727 1.20913 1.19039
1.17515 0.87115 0.82371 0.79415 1.90865 1.12599 1.86204 1.48137
1.20636 0.97071 0.97087 0.98815 1.21703 0.90707 0.95290 0.96076
1.20413 0.95040 0.95425 0.97615 1.98421 1.41866 1.95641 1.64588
1.20820 0.92676 1.00183 0.90539 1.21345 1.02369 0.92333 0.99786
1.43211 0.99914 1.01069 1.00334 1.94537 1.55002 1.13321 1.75135
1.94630 1.17739 1.84643 1.37802 1.18103 0.83968 0.88351 0.90973
1.84817 1.26723 1.82419 1.32515 0.92875 0.89790 0.92155 0.94632
0.94054 0.92329 0.81924 0.81377 0.72300
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.93 9.09 59.84 0.54 1.47 16
2 N -0.59 -10.65 2.86 -184.19 -0.53 -11.17 16
3 C 0.22 4.82 4.28 -5.19 -0.02 4.79 16
4 C -0.54 -14.35 9.94 -34.44 -0.34 -14.69 16
5 H 0.07 2.17 8.06 -52.49 -0.42 1.74 16
6 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16
7 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16
8 Si 0.88 20.43 27.47 -169.99 -4.67 15.76 16
9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
11 H -0.27 -5.76 6.54 56.52 0.37 -5.39 16
12 C 0.55 10.20 6.94 -12.47 -0.09 10.12 16
13 O -0.50 -11.64 16.10 -3.71 -0.06 -11.70 16
14 C -0.13 -1.82 4.90 -104.84 -0.51 -2.34 16
15 C -0.02 -0.19 7.38 -39.16 -0.29 -0.48 16
16 C -0.06 -0.51 6.31 -39.56 -0.25 -0.76 16
17 Cl -0.03 -0.26 28.94 -51.86 -1.50 -1.76 16
18 C -0.02 -0.22 9.32 -39.50 -0.37 -0.59 16
19 C -0.07 -0.92 6.86 -79.84 -0.55 -1.46 16
20 N 0.03 0.47 4.45 34.01 0.15 0.62 16
21 O -0.17 -2.33 18.44 -29.46 -0.54 -2.87 16
22 O -0.13 -1.93 17.24 -36.50 -0.63 -2.56 16
23 C 0.24 3.30 6.68 -38.70 -0.26 3.04 16
24 O -0.45 -6.98 10.57 -45.89 -0.48 -7.46 16
25 H 0.05 0.52 7.56 -51.93 -0.39 0.13 16
26 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16
27 H 0.06 0.64 5.68 -51.93 -0.29 0.35 16
28 H 0.04 0.75 7.13 -51.93 -0.37 0.38 16
29 H 0.04 1.00 6.79 -51.93 -0.35 0.64 16
30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16
31 H 0.16 1.35 6.57 -52.49 -0.34 1.00 16
32 H 0.17 1.31 7.59 -52.49 -0.40 0.91 16
33 H 0.41 4.96 9.06 45.56 0.41 5.38 16
LS Contribution 312.80 15.07 4.71 4.71
Total: -1.00 -33.35 312.80 -6.76 -40.11
By element:
Atomic # 1 Polarization: 2.46 SS G_CDS: -1.75 Total: 0.71 kcal
Atomic # 6 Polarization: 3.34 SS G_CDS: -2.23 Total: 1.11 kcal
Atomic # 7 Polarization: -36.45 SS G_CDS: 0.40 Total: -36.05 kcal
Atomic # 8 Polarization: -22.88 SS G_CDS: -1.72 Total: -24.59 kcal
Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal
Atomic # 17 Polarization: -0.26 SS G_CDS: -1.50 Total: -1.76 kcal
Total LS contribution 4.71 Total: 4.71 kcal
Total: -33.35 -6.76 -40.11 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000563181212.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.262 kcal
(2) G-P(sol) polarization free energy of solvation -33.353 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.615 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.372 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds