Wall clock time and date at job start Tue Mar 31 2020 10:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46506 * 120.00025 * 2 1 4 4 C 1.50696 * 109.47169 * 270.00276 * 3 2 1 5 5 H 1.08000 * 120.00288 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99937 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99965 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 120.00294 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47191 * 89.99869 * 8 6 4 10 10 H 1.48494 * 109.47034 * 210.00231 * 8 6 4 11 11 H 1.48500 * 109.46508 * 329.99821 * 8 6 4 12 12 C 1.34774 * 120.00238 * 180.02562 * 2 1 3 13 13 O 1.21597 * 120.00322 * 184.41576 * 12 2 1 14 14 C 1.47540 * 120.00108 * 4.40941 * 12 2 1 15 15 C 1.39714 * 120.18606 * 310.87462 * 14 12 2 16 16 C 1.37887 * 119.89169 * 180.27238 * 15 14 12 17 17 Cl 1.73606 * 119.86058 * 179.76320 * 16 15 14 18 18 C 1.38642 * 120.27672 * 359.74122 * 16 15 14 19 19 C 1.38048 * 120.37777 * 0.02562 * 18 16 15 20 20 N 1.48022 * 119.95192 * 180.02562 * 19 18 16 21 21 O 1.21801 * 119.99960 * 359.97438 * 20 19 18 22 22 O 1.21801 * 119.99998 * 179.97438 * 20 19 18 23 23 C 1.38699 * 120.10075 * 359.97438 * 19 18 16 24 24 O 1.35673 * 120.14109 * 179.97438 * 23 19 18 25 25 H 1.09003 * 109.46708 * 273.01786 * 1 2 3 26 26 H 1.08995 * 109.47463 * 33.01336 * 1 2 3 27 27 H 1.08999 * 109.47387 * 153.02006 * 1 2 3 28 28 H 1.09002 * 109.46672 * 30.00327 * 3 2 1 29 29 H 1.08999 * 109.47152 * 150.00133 * 3 2 1 30 30 H 0.97005 * 120.00271 * 180.02562 * 7 6 4 31 31 H 1.08001 * 120.05040 * 0.03718 * 15 14 12 32 32 H 1.08001 * 119.81054 * 180.02562 * 18 16 15 33 33 H 0.96700 * 114.00004 * 90.00224 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.3446 3.2580 -2.9126 8 14 3.7329 3.9293 -0.2529 9 1 5.1065 3.5082 0.1229 10 1 3.7476 5.3560 -0.6643 11 1 2.8270 3.7592 0.9114 12 6 2.1389 -1.1671 -0.0005 13 8 3.3521 -1.1688 0.0806 14 6 1.4045 -2.4430 -0.0993 15 6 0.3106 -2.6903 0.7339 16 6 -0.3678 -3.8870 0.6403 17 17 -1.7232 -4.1959 1.6802 18 6 0.0276 -4.8445 -0.2812 19 6 1.1038 -4.6100 -1.1134 20 7 1.5175 -5.6386 -2.0941 21 8 0.9087 -6.6911 -2.1663 22 8 2.4667 -5.4325 -2.8291 23 6 1.7975 -3.4117 -1.0325 24 8 2.8557 -3.1806 -1.8496 25 1 -0.3633 0.0541 1.0263 26 1 -0.3634 0.8617 -0.5599 27 1 -0.3634 -0.9158 -0.4662 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 3.8214 4.0839 -3.0899 31 1 -0.0007 -1.9468 1.4527 32 1 -0.5095 -5.7790 -0.3484 33 1 2.6208 -2.7595 -2.6878 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563181212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:04 Heat of formation + Delta-G solvation = -41.371721 kcal Electronic energy + Delta-G solvation = -23810.654864 eV Core-core repulsion = 19867.039139 eV Total energy + Delta-G solvation = -3943.615725 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.055 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.41655 -40.75503 -38.70587 -37.86191 -36.80142 -36.40891 -35.25169 -33.04936 -32.28082 -30.64387 -28.66340 -26.90382 -26.35669 -24.51493 -22.91019 -22.32265 -20.27259 -19.03005 -18.70772 -18.53227 -17.70960 -17.15007 -16.86040 -16.63366 -16.48780 -15.68303 -15.37083 -14.63224 -14.31707 -13.85502 -13.64551 -13.60391 -13.04104 -12.63890 -12.53184 -12.23161 -11.92068 -11.85902 -11.68936 -11.67589 -11.59325 -11.23005 -11.13969 -10.99407 -10.67093 -10.34307 -10.04055 -9.73286 -9.51709 -9.30161 -8.72387 -8.03509 -6.22462 -4.23551 -0.53793 0.10413 0.94513 0.98135 1.48087 2.40078 2.96120 3.19811 3.25288 3.27871 3.35239 3.42781 4.03531 4.10230 4.17738 4.27457 4.45704 4.72121 4.90382 5.10546 5.16102 5.24425 5.26496 5.46313 5.52425 5.89836 6.15033 6.45030 6.72506 6.98424 7.18839 7.42438 7.48929 7.82642 8.26903 8.51804 8.77806 9.36240 10.90400 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.004273 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.001027 B = 6550.746551 C = 7848.560008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.585 5.585 3 C 0.216 3.784 4 C -0.537 4.537 5 H 0.074 0.926 6 C 0.076 3.924 7 N -0.893 5.893 8 Si 0.876 3.124 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.552 3.448 13 O -0.503 6.503 14 C -0.131 4.131 15 C -0.018 4.018 16 C -0.057 4.057 17 Cl -0.034 7.034 18 C -0.022 4.022 19 C -0.074 4.074 20 N 0.034 4.966 21 O -0.169 6.169 22 O -0.126 6.126 23 C 0.236 3.764 24 O -0.451 6.451 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.267 0.733 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.170 -13.393 7.840 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.317 5.317 3 C 0.096 3.904 4 C -0.575 4.575 5 H 0.093 0.907 6 C -0.127 4.127 7 N -0.530 5.530 8 Si 0.703 3.297 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.336 3.664 13 O -0.378 6.378 14 C -0.136 4.136 15 C -0.038 4.038 16 C -0.085 4.085 17 Cl -0.005 7.005 18 C -0.042 4.042 19 C -0.158 4.158 20 N 0.555 4.445 21 O -0.380 6.380 22 O -0.348 6.348 23 C 0.186 3.814 24 O -0.265 6.265 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.181 0.819 32 H 0.186 0.814 33 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -11.449 -12.989 8.767 19.408 hybrid contribution -0.033 0.531 0.015 0.532 sum -11.482 -12.459 8.782 19.084 Atomic orbital electron populations 1.21938 0.80772 1.03337 1.01069 1.47809 1.06422 1.06737 1.70733 1.19793 0.92631 0.79152 0.98850 1.21232 1.37865 1.07541 0.90888 0.90741 1.24834 0.94997 0.97260 0.95650 1.69880 1.40898 1.23556 1.18690 0.86856 0.80252 0.79889 0.82742 1.19727 1.20913 1.19039 1.17515 0.87115 0.82371 0.79415 1.90865 1.12599 1.86204 1.48137 1.20636 0.97071 0.97087 0.98815 1.21703 0.90707 0.95290 0.96076 1.20413 0.95040 0.95425 0.97615 1.98421 1.41866 1.95641 1.64588 1.20820 0.92676 1.00183 0.90539 1.21345 1.02369 0.92333 0.99786 1.43211 0.99914 1.01069 1.00334 1.94537 1.55002 1.13321 1.75135 1.94630 1.17739 1.84643 1.37802 1.18103 0.83968 0.88351 0.90973 1.84817 1.26723 1.82419 1.32515 0.92875 0.89790 0.92155 0.94632 0.94054 0.92329 0.81924 0.81377 0.72300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 9.09 59.84 0.54 1.47 16 2 N -0.59 -10.65 2.86 -184.19 -0.53 -11.17 16 3 C 0.22 4.82 4.28 -5.19 -0.02 4.79 16 4 C -0.54 -14.35 9.94 -34.44 -0.34 -14.69 16 5 H 0.07 2.17 8.06 -52.49 -0.42 1.74 16 6 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 8 Si 0.88 20.43 27.47 -169.99 -4.67 15.76 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -5.76 6.54 56.52 0.37 -5.39 16 12 C 0.55 10.20 6.94 -12.47 -0.09 10.12 16 13 O -0.50 -11.64 16.10 -3.71 -0.06 -11.70 16 14 C -0.13 -1.82 4.90 -104.84 -0.51 -2.34 16 15 C -0.02 -0.19 7.38 -39.16 -0.29 -0.48 16 16 C -0.06 -0.51 6.31 -39.56 -0.25 -0.76 16 17 Cl -0.03 -0.26 28.94 -51.86 -1.50 -1.76 16 18 C -0.02 -0.22 9.32 -39.50 -0.37 -0.59 16 19 C -0.07 -0.92 6.86 -79.84 -0.55 -1.46 16 20 N 0.03 0.47 4.45 34.01 0.15 0.62 16 21 O -0.17 -2.33 18.44 -29.46 -0.54 -2.87 16 22 O -0.13 -1.93 17.24 -36.50 -0.63 -2.56 16 23 C 0.24 3.30 6.68 -38.70 -0.26 3.04 16 24 O -0.45 -6.98 10.57 -45.89 -0.48 -7.46 16 25 H 0.05 0.52 7.56 -51.93 -0.39 0.13 16 26 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 27 H 0.06 0.64 5.68 -51.93 -0.29 0.35 16 28 H 0.04 0.75 7.13 -51.93 -0.37 0.38 16 29 H 0.04 1.00 6.79 -51.93 -0.35 0.64 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.16 1.35 6.57 -52.49 -0.34 1.00 16 32 H 0.17 1.31 7.59 -52.49 -0.40 0.91 16 33 H 0.41 4.96 9.06 45.56 0.41 5.38 16 LS Contribution 312.80 15.07 4.71 4.71 Total: -1.00 -33.35 312.80 -6.76 -40.11 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -1.75 Total: 0.71 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -2.23 Total: 1.11 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.40 Total: -36.05 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -1.72 Total: -24.59 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.50 Total: -1.76 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.35 -6.76 -40.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563181212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.262 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds