Wall clock time and date at job start Tue Mar 31 2020 10:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46506 * 120.00025 * 2 1 4 4 C 1.50696 * 109.47169 * 270.00276 * 3 2 1 5 5 H 1.08000 * 120.00288 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99937 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99965 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 120.00294 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47191 * 89.99869 * 8 6 4 10 10 H 1.48494 * 109.47034 * 210.00231 * 8 6 4 11 11 H 1.48500 * 109.46508 * 329.99821 * 8 6 4 12 12 C 1.34774 * 120.00238 * 180.02562 * 2 1 3 13 13 O 1.21597 * 120.00322 * 184.41576 * 12 2 1 14 14 C 1.47540 * 120.00108 * 4.40941 * 12 2 1 15 15 C 1.39714 * 120.18606 * 310.87462 * 14 12 2 16 16 C 1.37887 * 119.89169 * 180.27238 * 15 14 12 17 17 Cl 1.73606 * 119.86058 * 179.76320 * 16 15 14 18 18 C 1.38642 * 120.27672 * 359.74122 * 16 15 14 19 19 C 1.38048 * 120.37777 * 0.02562 * 18 16 15 20 20 N 1.48022 * 119.95192 * 180.02562 * 19 18 16 21 21 O 1.21801 * 119.99960 * 359.97438 * 20 19 18 22 22 O 1.21801 * 119.99998 * 179.97438 * 20 19 18 23 23 C 1.38699 * 120.10075 * 359.97438 * 19 18 16 24 24 O 1.35673 * 120.14109 * 179.97438 * 23 19 18 25 25 H 1.09003 * 109.46708 * 273.01786 * 1 2 3 26 26 H 1.08995 * 109.47463 * 33.01336 * 1 2 3 27 27 H 1.08999 * 109.47387 * 153.02006 * 1 2 3 28 28 H 1.09002 * 109.46672 * 30.00327 * 3 2 1 29 29 H 1.08999 * 109.47152 * 150.00133 * 3 2 1 30 30 H 0.97005 * 120.00271 * 180.02562 * 7 6 4 31 31 H 1.08001 * 120.05040 * 0.03718 * 15 14 12 32 32 H 1.08001 * 119.81054 * 180.02562 * 18 16 15 33 33 H 0.96700 * 114.00004 * 90.00224 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.3446 3.2580 -2.9126 8 14 3.7329 3.9293 -0.2529 9 1 5.1065 3.5082 0.1229 10 1 3.7476 5.3560 -0.6643 11 1 2.8270 3.7592 0.9114 12 6 2.1389 -1.1671 -0.0005 13 8 3.3521 -1.1688 0.0806 14 6 1.4045 -2.4430 -0.0993 15 6 0.3106 -2.6903 0.7339 16 6 -0.3678 -3.8870 0.6403 17 17 -1.7232 -4.1959 1.6802 18 6 0.0276 -4.8445 -0.2812 19 6 1.1038 -4.6100 -1.1134 20 7 1.5175 -5.6386 -2.0941 21 8 0.9087 -6.6911 -2.1663 22 8 2.4667 -5.4325 -2.8291 23 6 1.7975 -3.4117 -1.0325 24 8 2.8557 -3.1806 -1.8496 25 1 -0.3633 0.0541 1.0263 26 1 -0.3634 0.8617 -0.5599 27 1 -0.3634 -0.9158 -0.4662 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 3.8214 4.0839 -3.0899 31 1 -0.0007 -1.9468 1.4527 32 1 -0.5095 -5.7790 -0.3484 33 1 2.6208 -2.7595 -2.6878 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563181212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:04 Heat of formation + Delta-G solvation = -64.261169 kcal Electronic energy + Delta-G solvation = -23811.647425 eV Core-core repulsion = 19867.039139 eV Total energy + Delta-G solvation = -3944.608286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.055 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.47773 -41.89509 -40.02051 -38.82481 -37.73287 -37.39326 -36.77724 -34.83266 -33.58845 -31.66960 -30.36023 -27.99052 -27.54105 -25.90510 -23.92444 -23.84258 -21.49274 -20.13506 -19.85468 -19.67028 -19.15120 -18.77152 -18.03469 -17.83189 -17.46499 -17.11064 -16.42941 -16.18548 -15.85717 -15.04001 -14.77293 -14.56610 -14.44400 -14.11194 -13.84356 -13.67787 -13.22687 -12.92113 -12.86060 -12.81397 -12.70277 -12.46865 -12.35483 -12.32565 -12.10696 -12.07142 -11.76509 -11.17116 -10.88230 -10.82492 -10.21349 -9.56275 -8.34919 -6.41017 -1.52904 -0.84938 -0.07427 0.00130 0.67911 1.34007 1.34147 1.38708 1.45651 1.71769 2.08492 2.30707 2.39037 2.96721 3.02232 3.24962 3.29249 3.47274 3.71498 3.99339 4.20802 4.27230 4.37711 4.54557 4.59956 4.76853 4.88574 4.90487 5.08313 5.40505 5.45280 6.15694 6.18237 6.36752 6.42351 6.60711 7.05297 7.24984 8.81466 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.004273 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.001027 B = 6550.746551 C = 7848.560008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.590 5.590 3 C 0.222 3.778 4 C -0.539 4.539 5 H 0.032 0.968 6 C 0.014 3.986 7 N -0.943 5.943 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.278 1.278 11 H -0.232 1.232 12 C 0.550 3.450 13 O -0.564 6.564 14 C -0.146 4.146 15 C 0.004 3.996 16 C -0.044 4.044 17 Cl -0.006 7.006 18 C 0.000 4.000 19 C -0.080 4.080 20 N 0.035 4.965 21 O -0.142 6.142 22 O -0.180 6.180 23 C 0.221 3.779 24 O -0.477 6.477 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.024 0.976 30 H 0.268 0.732 31 H 0.190 0.810 32 H 0.196 0.804 33 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.199 -14.171 10.889 23.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.320 5.320 3 C 0.100 3.900 4 C -0.577 4.577 5 H 0.050 0.950 6 C -0.184 4.184 7 N -0.583 5.583 8 Si 0.767 3.233 9 H -0.205 1.205 10 H -0.203 1.203 11 H -0.155 1.155 12 C 0.337 3.663 13 O -0.443 6.443 14 C -0.151 4.151 15 C -0.015 4.015 16 C -0.072 4.072 17 Cl 0.024 6.976 18 C -0.020 4.020 19 C -0.164 4.164 20 N 0.553 4.447 21 O -0.363 6.363 22 O -0.389 6.389 23 C 0.172 3.828 24 O -0.292 6.292 25 H 0.115 0.885 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.207 0.793 32 H 0.213 0.787 33 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -14.468 -13.731 11.785 23.167 hybrid contribution 0.694 0.614 -0.915 1.303 sum -13.773 -13.116 10.870 21.906 Atomic orbital electron populations 1.22308 0.77293 1.04233 1.03984 1.47838 1.08599 1.05399 1.70212 1.19474 0.93082 0.81698 0.95704 1.21507 1.37105 1.06840 0.92283 0.94950 1.25805 0.95230 0.98953 0.98448 1.70038 1.42500 1.24465 1.21321 0.85776 0.79655 0.77766 0.80143 1.20469 1.20325 1.15460 1.18070 0.86660 0.83740 0.77819 1.90822 1.15387 1.87331 1.50785 1.20129 0.98865 0.95103 1.01032 1.21894 0.88635 0.96198 0.94754 1.20351 0.95230 0.94427 0.97202 1.98450 1.40188 1.95437 1.63554 1.21161 0.90929 1.01083 0.88813 1.21283 1.03381 0.91429 1.00336 1.43399 0.99626 1.01283 1.00385 1.94494 1.54053 1.13415 1.74318 1.94657 1.19265 1.85309 1.39672 1.18273 0.84107 0.89239 0.91155 1.84781 1.28395 1.82740 1.33279 0.88515 0.90660 0.89889 0.92041 0.95810 0.92266 0.79270 0.78718 0.71643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.44 9.09 127.77 1.16 2.60 16 2 N -0.59 -20.99 2.86 -854.92 -2.44 -23.43 16 3 C 0.22 9.84 4.28 85.63 0.37 10.20 16 4 C -0.54 -29.69 9.94 25.60 0.25 -29.44 16 5 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 6 C 0.01 0.80 5.47 84.65 0.46 1.26 16 7 N -0.94 -57.65 13.96 21.45 0.30 -57.35 16 8 Si 0.94 42.17 27.47 68.60 1.88 44.05 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.23 -9.01 6.54 99.48 0.65 -8.36 16 12 C 0.55 20.51 6.94 86.70 0.60 21.11 16 13 O -0.56 -27.23 16.10 4.57 0.07 -27.16 16 14 C -0.15 -3.92 4.90 -20.01 -0.10 -4.02 16 15 C 0.00 0.07 7.38 22.54 0.17 0.24 16 16 C -0.04 -0.60 6.31 22.28 0.14 -0.46 16 17 Cl -0.01 -0.06 28.94 -2.72 -0.08 -0.14 16 18 C 0.00 -0.01 9.32 22.32 0.21 0.20 16 19 C -0.08 -1.87 6.86 36.44 0.25 -1.62 16 20 N 0.04 0.97 4.45 -46.30 -0.21 0.76 16 21 O -0.14 -3.65 18.44 18.89 0.35 -3.30 16 22 O -0.18 -5.78 17.24 25.61 0.44 -5.33 16 23 C 0.22 6.24 6.68 22.84 0.15 6.39 16 24 O -0.48 -15.92 10.57 -63.93 -0.68 -16.59 16 25 H 0.10 1.40 7.56 -2.39 -0.02 1.38 16 26 H 0.07 1.88 8.09 -2.39 -0.02 1.86 16 27 H 0.08 1.50 5.68 -2.39 -0.01 1.49 16 28 H 0.06 2.42 7.13 -2.39 -0.02 2.40 16 29 H 0.02 1.15 6.79 -2.39 -0.02 1.13 16 30 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 31 H 0.19 2.15 6.57 -2.91 -0.02 2.13 16 32 H 0.20 2.08 7.59 -2.91 -0.02 2.06 16 33 H 0.42 11.52 9.06 -74.06 -0.67 10.85 16 Total: -1.00 -77.73 312.80 3.78 -73.95 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.47 Total: 8.08 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 3.67 Total: 6.47 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -2.35 Total: -80.02 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: 0.19 Total: -52.39 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.05 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -0.08 Total: -0.14 kcal Total: -77.73 3.78 -73.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563181212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.686 kcal (2) G-P(sol) polarization free energy of solvation -77.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds