Wall clock time and date at job start Tue Mar 31 2020 10:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00538 * 2 1 4 4 H 1.48500 * 109.47016 * 270.00375 * 3 2 1 5 5 H 1.48500 * 109.46712 * 30.00113 * 3 2 1 6 6 H 1.48494 * 109.47055 * 149.99968 * 3 2 1 7 7 C 1.37878 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99862 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00252 * 179.97438 * 7 2 1 10 10 S 1.81394 * 109.47203 * 179.97438 * 9 7 2 11 11 C 1.81408 * 102.99810 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46846 * 180.02562 * 11 10 9 13 13 C 1.38254 * 119.88794 * 90.00165 * 12 11 10 14 14 C 1.38443 * 120.20752 * 179.97438 * 13 12 11 15 15 Cl 1.73598 * 120.15173 * 180.02562 * 14 13 12 16 16 C 1.38562 * 119.69077 * 0.02562 * 14 13 12 17 17 C 1.38709 * 120.05804 * 359.97438 * 16 14 13 18 18 C 1.38325 * 119.89093 * 269.72246 * 12 11 10 19 19 O 1.36460 * 119.61632 * 179.97438 * 17 16 14 20 20 C 1.42903 * 115.92459 * 68.29918 * 19 17 16 21 21 C 1.52066 * 110.76580 * 275.57665 * 20 19 17 22 22 C 1.52072 * 112.37029 * 64.80873 * 21 20 19 23 23 O 1.36492 * 120.32424 * 179.97438 * 16 14 13 24 24 H 0.97000 * 119.99617 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46634 * 59.99740 * 9 7 2 26 26 H 1.08997 * 109.46782 * 299.99857 * 9 7 2 27 27 H 1.09000 * 109.46602 * 60.00357 * 11 10 9 28 28 H 1.09000 * 109.47286 * 300.00088 * 11 10 9 29 29 H 1.07998 * 119.89856 * 359.96363 * 13 12 11 30 30 H 1.08008 * 120.13069 * 0.02562 * 18 12 11 31 31 H 1.09000 * 109.21761 * 35.91343 * 20 19 17 32 32 H 1.09001 * 109.22359 * 155.29152 * 20 19 17 33 33 H 1.09001 * 108.90094 * 185.54923 * 21 20 19 34 34 H 1.08998 * 108.90583 * 304.15907 * 21 20 19 35 35 H 1.08995 * 109.21809 * 55.52627 * 22 21 20 36 36 H 1.09002 * 109.21105 * 174.90526 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 16 4.1160 -2.9045 -0.0010 11 6 5.9185 -2.7001 -0.0025 12 6 6.5777 -4.0554 -0.0032 13 6 6.8780 -4.6749 -1.2021 14 6 7.4840 -5.9196 -1.2105 15 17 7.8610 -6.6958 -2.7168 16 6 7.7881 -6.5429 -0.0109 17 6 7.4864 -5.9206 1.1915 18 6 6.8854 -4.6729 1.1958 19 8 7.7893 -6.5429 2.3675 20 6 9.1810 -6.6744 2.6643 21 6 9.7616 -7.9081 1.9912 22 6 9.7306 -7.8084 0.4741 23 8 8.3850 -7.7703 -0.0040 24 1 -0.4849 0.8401 0.0004 25 1 3.8751 -0.6806 0.8889 26 1 3.8744 -0.6803 -0.8911 27 1 6.2223 -2.1484 0.8871 28 1 6.2210 -2.1490 -0.8929 29 1 6.6390 -4.1863 -2.1352 30 1 6.6539 -4.1858 2.1316 31 1 9.7089 -5.7895 2.3086 32 1 9.3113 -6.7602 3.7431 33 1 10.7946 -8.0343 2.3157 34 1 9.1863 -8.7816 2.2981 35 1 10.2472 -6.9002 0.1636 36 1 10.2381 -8.6735 0.0473 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565645106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:45 Heat of formation + Delta-G solvation = -62.335971 kcal Electronic energy + Delta-G solvation = -20840.101130 eV Core-core repulsion = 17441.869542 eV Total energy + Delta-G solvation = -3398.231589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.053 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13508 -38.26946 -37.78550 -36.51442 -33.55685 -33.06770 -31.56744 -30.18830 -29.39625 -27.33697 -26.19182 -23.19836 -22.63127 -21.93423 -21.47151 -18.69455 -17.45345 -17.25513 -16.90815 -15.92772 -15.71339 -15.58892 -15.26190 -14.62540 -14.49811 -14.38403 -14.24261 -13.62406 -13.45780 -13.27932 -12.82694 -12.68746 -12.45065 -12.36864 -12.07306 -11.62249 -11.46149 -11.22918 -11.05554 -10.84649 -10.71537 -10.52125 -10.23007 -10.12985 -9.71309 -9.06906 -8.83218 -8.74265 -8.50647 -6.88526 -6.20395 -4.23007 0.69672 0.85781 1.91457 2.37071 3.12813 3.16697 3.18693 3.26063 3.26447 3.57334 3.58704 4.26780 4.27989 4.34312 4.55949 4.73503 4.80700 4.88846 4.94005 4.96309 4.99830 5.05515 5.10510 5.27559 5.35832 5.52833 5.62458 5.66156 5.75282 5.93517 6.21964 6.27002 6.52402 6.64242 6.81035 7.25530 7.39047 8.27517 8.82655 9.34782 10.91716 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.003024 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.125930 B = 9256.864031 C = 9998.062158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.080 3.920 3 Si 0.879 3.121 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.084 0.916 9 C 0.044 3.956 10 S -0.250 6.250 11 C -0.066 4.066 12 C -0.033 4.033 13 C -0.089 4.089 14 C -0.032 4.032 15 Cl -0.052 7.052 16 C 0.068 3.932 17 C 0.079 3.921 18 C -0.096 4.096 19 O -0.312 6.312 20 C 0.058 3.942 21 C -0.187 4.187 22 C 0.059 3.941 23 O -0.308 6.308 24 H 0.268 0.732 25 H 0.036 0.964 26 H 0.031 0.969 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.507 -12.429 1.586 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.705 3.295 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.102 0.898 9 C -0.104 4.104 10 S -0.020 6.020 11 C -0.214 4.214 12 C -0.035 4.035 13 C -0.110 4.110 14 C -0.059 4.059 15 Cl -0.023 7.023 16 C 0.022 3.978 17 C 0.035 3.965 18 C -0.117 4.117 19 O -0.228 6.228 20 C -0.017 4.017 21 C -0.225 4.225 22 C -0.016 4.016 23 O -0.224 6.224 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.163 0.837 30 H 0.162 0.838 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 23.572 -13.536 1.537 27.226 hybrid contribution 1.290 2.074 -0.127 2.446 sum 24.862 -11.461 1.410 27.413 Atomic orbital electron populations 1.69866 1.06163 1.27319 1.49430 1.24860 0.94751 0.98713 0.94142 0.86801 0.80277 0.83612 0.78795 1.19872 1.20787 1.19097 1.20466 0.86859 0.95346 1.52730 0.89792 1.21463 1.01181 0.88580 0.99141 1.87148 0.98314 1.18686 1.97896 1.22297 0.98202 0.95252 1.05603 1.19167 0.96631 0.95792 0.91911 1.20950 0.97865 0.92821 0.99324 1.20798 1.04665 0.94039 0.86427 1.98368 1.92973 1.80799 1.30182 1.18764 1.00696 0.87333 0.90975 1.18836 1.01079 0.91987 0.84630 1.21101 0.99117 0.92279 0.99173 1.86424 1.24491 1.76767 1.35163 1.22663 0.80622 0.97210 1.01164 1.22486 1.02808 1.00749 0.96482 1.22642 0.82044 1.03153 0.93722 1.86422 1.27267 1.24194 1.84487 0.92179 0.94631 0.95067 0.89291 0.89267 0.83665 0.83775 0.92350 0.87668 0.89164 0.89660 0.92456 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.88 20.64 27.47 -169.99 -4.67 15.97 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 7 C -0.52 -14.57 9.68 -34.44 -0.33 -14.91 16 8 H 0.08 2.63 7.96 -52.48 -0.42 2.21 16 9 C 0.04 1.03 4.77 36.01 0.17 1.21 16 10 S -0.25 -5.11 21.64 -107.50 -2.33 -7.44 16 11 C -0.07 -0.98 6.06 36.01 0.22 -0.76 16 12 C -0.03 -0.45 5.14 -104.58 -0.54 -0.99 16 13 C -0.09 -1.16 9.48 -39.50 -0.37 -1.53 16 14 C -0.03 -0.41 6.33 -39.39 -0.25 -0.66 16 15 Cl -0.05 -0.62 28.53 -51.86 -1.48 -2.10 16 16 C 0.07 0.90 5.72 -39.29 -0.22 0.67 16 17 C 0.08 1.04 5.73 -39.31 -0.23 0.82 16 18 C -0.10 -1.27 9.65 -39.46 -0.38 -1.65 16 19 O -0.31 -3.87 10.16 -36.68 -0.37 -4.24 16 20 C 0.06 0.47 6.51 36.68 0.24 0.71 16 21 C -0.19 -1.27 5.93 -27.68 -0.16 -1.44 16 22 C 0.06 0.48 6.51 36.69 0.24 0.72 16 23 O -0.31 -3.79 9.64 -36.78 -0.35 -4.15 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.04 0.82 7.20 -51.92 -0.37 0.44 16 26 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 27 H 0.09 1.19 8.08 -51.92 -0.42 0.78 16 28 H 0.09 1.19 8.08 -51.92 -0.42 0.77 16 29 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.14 1.75 8.06 -52.48 -0.42 1.32 16 31 H 0.06 0.42 7.93 -51.93 -0.41 0.01 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.43 7.93 -51.93 -0.41 0.02 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -31.66 330.90 -9.71 -41.37 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -4.55 Total: -2.72 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -1.72 Total: -15.64 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.77 Total: -26.03 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.73 Total: -8.39 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Atomic # 16 Polarization: -5.11 SS G_CDS: -2.33 Total: -7.44 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.48 Total: -2.10 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.66 -9.71 -41.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565645106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.966 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds