Wall clock time and date at job start Tue Mar 31 2020 11:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35987 * 116.99677 * 2 1 4 4 C 1.39046 * 119.89078 * 0.02562 * 3 2 1 5 5 C 1.38024 * 120.40277 * 180.28030 * 4 3 2 6 6 C 1.38664 * 120.17269 * 359.48085 * 5 4 3 7 7 O 1.35672 * 120.11263 * 180.25719 * 6 5 4 8 8 S 1.52202 * 113.99879 * 270.25719 * 7 6 5 9 9 O 1.42104 * 104.27707 * 191.07357 * 8 7 6 10 10 O 1.42096 * 104.27753 * 318.92547 * 8 7 6 11 11 C 1.81396 * 104.45031 * 75.00146 * 8 7 6 12 12 C 1.53009 * 109.47183 * 179.97438 * 11 8 7 13 13 C 1.50692 * 109.46987 * 179.97438 * 12 11 8 14 14 H 1.08003 * 120.00578 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00079 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99480 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00376 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47232 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47201 * 119.99789 * 17 15 13 20 20 H 1.48506 * 109.47142 * 239.99783 * 17 15 13 21 21 C 1.40391 * 119.77200 * 0.51602 * 6 5 4 22 22 C 1.46784 * 120.19725 * 179.72394 * 21 6 5 23 23 O 1.21297 * 120.00159 * 0.02562 * 22 21 6 24 24 C 1.38124 * 119.88402 * 180.02562 * 3 2 1 25 25 H 1.08994 * 109.46681 * 60.00631 * 1 2 3 26 26 H 1.09007 * 109.46740 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47344 * 300.00343 * 1 2 3 28 28 H 1.08002 * 119.79356 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.91220 * 179.72223 * 5 4 3 30 30 H 1.08999 * 109.47411 * 299.99501 * 11 8 7 31 31 H 1.08998 * 109.47614 * 60.00119 * 11 8 7 32 32 H 1.08999 * 109.47164 * 300.00199 * 12 11 8 33 33 H 1.08998 * 109.46642 * 59.99655 * 12 11 8 34 34 H 0.96998 * 119.99657 * 180.02562 * 16 15 13 35 35 H 1.08007 * 120.00111 * 180.02562 * 22 21 6 36 36 H 1.08000 * 120.09131 * 359.95921 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2867 2.3763 0.0005 5 6 1.9023 3.6117 -0.0053 6 6 3.2860 3.7010 -0.0009 7 8 3.8897 4.9159 -0.0013 8 16 4.1642 5.4703 -1.3920 9 8 5.0141 6.5859 -1.1631 10 8 4.6154 4.3459 -2.1346 11 6 2.5415 6.0182 -1.9893 12 6 2.6865 6.6032 -3.3957 13 6 1.3383 7.0578 -3.8921 14 1 0.4651 6.9409 -3.2673 15 6 1.2191 7.6221 -5.1445 16 7 2.2823 7.7640 -5.9056 17 14 -0.4519 8.1863 -5.7596 18 1 -1.4784 7.9178 -4.7206 19 1 -0.4076 9.6425 -6.0477 20 1 -0.7984 7.4467 -6.9999 21 6 4.0601 2.5297 -0.0014 22 6 5.5255 2.6133 -0.0029 23 8 6.0713 3.6966 -0.0031 24 6 3.4258 1.2813 -0.0005 25 1 -0.3632 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2085 2.3138 0.0005 29 1 1.3045 4.5112 -0.0094 30 1 1.8588 5.1690 -2.0173 31 1 2.1457 6.7806 -1.3183 32 1 3.3691 7.4525 -3.3674 33 1 3.0825 5.8411 -4.0670 34 1 2.1985 8.1613 -6.7865 35 1 6.1180 1.7102 -0.0037 36 1 4.0137 0.3753 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732215212.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:16 Heat of formation + Delta-G solvation = -145.855795 kcal Electronic energy + Delta-G solvation = -24386.056186 eV Core-core repulsion = 20543.493741 eV Total energy + Delta-G solvation = -3842.562445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.39755 -39.83766 -38.62913 -36.86928 -36.58759 -35.49257 -33.95747 -32.07072 -31.19892 -30.08876 -27.67768 -25.74176 -24.97701 -23.56740 -21.85782 -21.71010 -20.00940 -18.45759 -18.10373 -17.48068 -17.33724 -16.56829 -16.12296 -16.07908 -15.77304 -15.32690 -14.96237 -14.61440 -14.35828 -14.27353 -14.10629 -13.61953 -13.23456 -13.03099 -12.89737 -12.58077 -12.31890 -12.23219 -11.80930 -11.59698 -11.56961 -11.39004 -11.23993 -11.11902 -10.98867 -10.43757 -10.40578 -9.93320 -9.76130 -9.49126 -9.21253 -8.55094 -8.52820 -6.14775 -4.20694 0.10322 0.53158 1.10023 2.25401 2.52190 2.79929 3.22936 3.30005 3.30955 3.33013 3.93655 4.17170 4.26236 4.35284 4.42115 4.51599 4.65879 4.73965 4.79968 4.91882 5.06057 5.13670 5.15329 5.20393 5.46293 5.52742 5.59326 5.74754 5.81590 5.84834 6.30812 6.41058 6.87774 7.26709 7.29518 7.32765 7.77658 8.14128 8.82416 9.44003 10.96381 Molecular weight = 314.07amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.004749 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.233575 B = 5894.484076 C = 7526.019054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.311 6.311 3 C 0.125 3.875 4 C -0.159 4.159 5 C -0.102 4.102 6 C 0.098 3.902 7 O -0.659 6.659 8 S 2.581 3.419 9 O -0.930 6.930 10 O -0.959 6.959 11 C -0.620 4.620 12 C 0.031 3.969 13 C -0.521 4.521 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.889 5.889 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.282 1.282 21 C -0.129 4.129 22 C 0.384 3.616 23 O -0.437 6.437 24 C -0.088 4.088 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.119 0.881 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 -17.334 14.328 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.224 6.224 3 C 0.079 3.921 4 C -0.177 4.177 5 C -0.122 4.122 6 C 0.055 3.945 7 O -0.617 6.617 8 S 2.680 3.320 9 O -0.928 6.928 10 O -0.958 6.958 11 C -0.750 4.750 12 C -0.008 4.008 13 C -0.560 4.560 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.527 5.527 17 Si 0.728 3.272 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.208 1.208 21 C -0.132 4.132 22 C 0.241 3.759 23 O -0.308 6.308 24 C -0.107 4.107 25 H 0.080 0.920 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.165 0.835 29 H 0.170 0.830 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.444 -16.874 14.386 22.309 hybrid contribution -1.917 0.758 -0.622 2.153 sum -4.362 -16.117 13.764 21.638 Atomic orbital electron populations 1.23177 0.77730 1.04490 1.01879 1.86118 1.21913 1.25944 1.88437 1.18919 0.92182 0.84635 0.96377 1.21328 1.01055 0.90996 1.04361 1.21266 0.92283 0.99663 0.98959 1.18075 0.90523 0.80766 1.05145 1.85740 1.79483 1.37696 1.58781 1.05978 0.78398 0.74955 0.72633 1.93571 1.63532 1.53477 1.82209 1.93540 1.80297 1.50368 1.71556 1.30836 1.20338 1.11399 1.12464 1.18946 1.00040 0.96750 0.85033 1.21019 0.92882 1.41109 1.00981 0.91990 1.25073 0.97129 0.95589 0.96684 1.69966 1.28672 1.43775 1.10281 0.86409 0.83521 0.78532 0.78779 1.19681 1.20728 1.20780 1.21006 0.97662 0.91847 1.02720 1.23869 0.87501 0.93692 0.70841 1.90563 1.74196 1.33289 1.32781 1.20479 0.91680 0.97078 1.01502 0.91982 0.87826 0.92283 0.83479 0.82956 0.86196 0.85670 0.94657 0.94658 0.92522 0.86456 0.82788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.63 10.49 -19.70 -0.21 -2.84 16 3 C 0.13 1.22 6.67 -39.32 -0.26 0.96 16 4 C -0.16 -1.52 9.02 -39.36 -0.36 -1.88 16 5 C -0.10 -1.22 8.44 -39.50 -0.33 -1.56 16 6 C 0.10 1.48 4.82 -38.61 -0.19 1.30 16 7 O -0.66 -11.91 8.56 -54.16 -0.46 -12.37 16 8 S 2.58 53.91 4.42 -107.50 -0.48 53.43 16 9 O -0.93 -22.61 18.09 -67.04 -1.21 -23.82 16 10 O -0.96 -21.05 14.72 -69.88 -1.03 -22.08 16 11 C -0.62 -12.51 5.39 37.16 0.20 -12.31 16 12 C 0.03 0.81 4.98 -27.88 -0.14 0.67 16 13 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 14 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 17 Si 0.90 21.05 29.54 -169.99 -5.02 16.02 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.13 -1.71 5.30 -104.96 -0.56 -2.27 16 22 C 0.38 5.15 10.73 34.18 0.37 5.51 16 23 O -0.44 -8.06 14.37 -24.25 -0.35 -8.41 16 24 C -0.09 -0.88 9.73 -38.95 -0.38 -1.26 16 25 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 26 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 28 H 0.15 0.96 6.27 -52.49 -0.33 0.63 16 29 H 0.15 1.55 7.46 -52.49 -0.39 1.15 16 30 H 0.12 2.09 6.58 -51.92 -0.34 1.75 16 31 H 0.12 2.25 8.14 -51.93 -0.42 1.83 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 324.59 15.07 4.89 4.89 Total: -1.00 -38.29 324.59 -8.13 -46.42 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -3.93 Total: -2.59 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -1.06 Total: -22.89 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.74 Total: -25.76 kcal Atomic # 8 Polarization: -66.26 SS G_CDS: -3.26 Total: -69.52 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 53.91 SS G_CDS: -0.48 Total: 53.43 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -38.29 -8.13 -46.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732215212.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.439 kcal (2) G-P(sol) polarization free energy of solvation -38.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds